Wall clock time and date at job start Mon Mar 30 2020 03:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 114.00082 * 2 1 4 4 C 1.53004 * 109.47246 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.48798 * 295.89599 * 4 3 2 6 6 H 1.09006 * 109.46949 * 298.19435 * 5 4 3 7 7 O 1.42892 * 109.47109 * 58.19285 * 5 4 3 8 8 C 1.50692 * 109.46920 * 178.19852 * 5 4 3 9 9 H 1.08003 * 120.00451 * 359.05181 * 8 5 4 10 10 C 1.37883 * 120.00075 * 179.05827 * 8 5 4 11 11 N 1.31516 * 119.99846 * 359.97438 * 10 8 5 12 12 Si 1.86800 * 120.00125 * 179.97438 * 10 8 5 13 13 H 1.48497 * 109.47045 * 89.99716 * 12 10 8 14 14 H 1.48498 * 109.47123 * 209.99983 * 12 10 8 15 15 H 1.48502 * 109.46927 * 329.99522 * 12 10 8 16 16 C 1.53092 * 109.48113 * 175.86899 * 4 3 2 17 17 C 1.53183 * 109.15922 * 297.62362 * 16 4 3 18 18 C 1.53170 * 109.03685 * 303.01866 * 17 16 4 19 19 C 1.53094 * 109.16444 * 56.98491 * 18 17 16 20 20 O 1.42900 * 109.48040 * 55.92373 * 4 3 2 21 21 H 1.08995 * 109.46692 * 60.00394 * 1 2 3 22 22 H 1.09001 * 109.47144 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46864 * 300.00222 * 1 2 3 24 24 H 1.09005 * 109.47672 * 59.99696 * 3 2 1 25 25 H 1.09001 * 109.47291 * 299.99801 * 3 2 1 26 26 H 0.96704 * 113.99623 * 60.00598 * 7 5 4 27 27 H 0.96992 * 119.99967 * 179.97438 * 11 10 8 28 28 H 1.09001 * 109.52411 * 177.72215 * 16 4 3 29 29 H 1.08995 * 109.57674 * 57.55772 * 16 4 3 30 30 H 1.09006 * 109.54080 * 183.15629 * 17 16 4 31 31 H 1.09001 * 109.61784 * 62.93512 * 17 16 4 32 32 H 1.08999 * 109.52288 * 176.88597 * 18 17 16 33 33 H 1.08993 * 109.52830 * 297.07793 * 18 17 16 34 34 H 1.09003 * 109.48176 * 62.36700 * 19 18 17 35 35 H 1.08994 * 109.48486 * 182.40596 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9941 0.5166 1.2985 6 1 3.7052 1.1359 2.1477 7 8 3.3802 -0.7685 1.4155 8 6 5.4925 0.3577 1.2794 9 1 6.0594 0.6851 0.4204 10 6 6.1399 -0.2058 2.3586 11 7 5.4496 -0.6041 3.4048 12 14 7.9972 -0.4034 2.3346 13 1 8.6317 0.8121 2.9048 14 1 8.3795 -1.5877 3.1448 15 1 8.4569 -0.5917 0.9352 16 6 4.1582 2.5793 -0.1033 17 6 3.7430 3.2174 -1.4326 18 6 4.1733 2.3015 -2.5824 19 6 3.5500 0.9175 -2.3827 20 8 3.9514 0.3943 -1.1149 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.6886 1.8464 0.8900 25 1 1.6887 1.8463 -0.8900 26 1 3.5938 -1.3737 0.6922 27 1 5.9050 -1.0008 4.1638 28 1 5.2443 2.4973 -0.0622 29 1 3.8080 3.1981 0.7228 30 1 4.2280 4.1879 -1.5384 31 1 2.6608 3.3464 -1.4544 32 1 3.8329 2.7210 -3.5291 33 1 5.2596 2.2138 -2.5914 34 1 2.4636 1.0001 -2.4143 35 1 3.8871 0.2492 -3.1750 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535675188.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:53 Heat of formation + Delta-G solvation = -145.304966 kcal Electronic energy + Delta-G solvation = -17877.061002 eV Core-core repulsion = 15068.327664 eV Total energy + Delta-G solvation = -2808.733338 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.54312 -36.65573 -35.05459 -33.09046 -31.91087 -31.24747 -27.49312 -26.66360 -25.32301 -23.34044 -23.04218 -20.73382 -18.77203 -16.89379 -16.12631 -15.91863 -15.25053 -14.88035 -14.47397 -14.29515 -13.96438 -13.67703 -13.25685 -12.74939 -12.51778 -12.13387 -12.04853 -11.85802 -11.09516 -10.93896 -10.88002 -10.83534 -10.65792 -10.56371 -10.36627 -9.91176 -9.69778 -9.11675 -8.88045 -8.54818 -8.42051 -7.77318 -5.86055 -3.99725 3.36175 3.43489 3.47640 4.20374 4.51363 4.69964 5.17288 5.20526 5.27681 5.42785 5.52213 5.55075 5.64346 5.69469 5.74907 5.87019 5.93306 5.97937 6.00907 6.07989 6.19124 6.34474 6.37030 6.50584 6.71603 6.84936 6.95353 7.70175 7.75196 7.99318 8.15327 8.40048 9.01816 9.63899 9.79365 11.18674 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.025960 B = 0.010896 C = 0.008644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.314978 B = 2569.030119 C = 3238.486235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.350 6.350 3 C 0.043 3.957 4 C 0.097 3.903 5 C 0.251 3.749 6 H 0.060 0.940 7 O -0.548 6.548 8 C -0.551 4.551 9 H 0.060 0.940 10 C 0.075 3.925 11 N -0.866 5.866 12 Si 0.886 3.114 13 H -0.282 1.282 14 H -0.288 1.288 15 H -0.274 1.274 16 C -0.134 4.134 17 C -0.125 4.125 18 C -0.154 4.154 19 C 0.056 3.944 20 O -0.343 6.343 21 H 0.026 0.974 22 H 0.080 0.920 23 H 0.033 0.967 24 H 0.047 0.953 25 H 0.036 0.964 26 H 0.351 0.649 27 H 0.258 0.742 28 H 0.090 0.910 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.040 0.960 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.371 5.827 -9.414 12.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.268 6.268 3 C -0.034 4.034 4 C 0.057 3.943 5 C 0.193 3.807 6 H 0.078 0.922 7 O -0.350 6.350 8 C -0.589 4.589 9 H 0.078 0.922 10 C -0.129 4.129 11 N -0.503 5.503 12 Si 0.714 3.286 13 H -0.209 1.209 14 H -0.213 1.213 15 H -0.199 1.199 16 C -0.171 4.171 17 C -0.163 4.163 18 C -0.192 4.192 19 C -0.021 4.021 20 O -0.261 6.261 21 H 0.045 0.955 22 H 0.098 0.902 23 H 0.052 0.948 24 H 0.065 0.935 25 H 0.054 0.946 26 H 0.196 0.804 27 H 0.067 0.933 28 H 0.109 0.891 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.394 5.673 -8.648 12.159 hybrid contribution 0.860 0.331 -0.580 1.089 sum -5.534 6.004 -9.228 12.321 Atomic orbital electron populations 1.22658 0.83316 1.01996 0.98632 1.88148 1.17303 1.26453 1.94890 1.23191 0.96045 0.85387 0.98776 1.22687 0.88808 0.91725 0.91059 1.19289 0.91679 0.82891 0.86828 0.92208 1.86475 1.73672 1.24968 1.49925 1.21627 0.92445 1.42392 1.02406 0.92202 1.25027 0.97657 0.94844 0.95409 1.70074 1.34863 1.39528 1.05802 0.86721 0.86424 0.77470 0.78025 1.20853 1.21341 1.19860 1.22036 1.03460 0.95641 0.96001 1.21683 1.00323 0.98461 0.95783 1.22175 1.01982 0.96989 0.98016 1.22438 0.97641 0.94100 0.87960 1.88125 1.77078 1.48762 1.12150 0.95535 0.90155 0.94812 0.93522 0.94614 0.80436 0.93253 0.89106 0.91597 0.92179 0.92624 0.92114 0.91142 0.94152 0.89976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.35 -6.90 8.68 -63.03 -0.55 -7.45 16 3 C 0.04 0.81 4.09 37.16 0.15 0.96 16 4 C 0.10 2.03 0.39 -90.57 -0.04 1.99 16 5 C 0.25 6.49 2.21 -27.88 -0.06 6.43 16 6 H 0.06 1.68 8.14 -51.93 -0.42 1.25 16 7 O -0.55 -14.96 10.87 -61.70 -0.67 -15.63 16 8 C -0.55 -15.28 7.63 -34.44 -0.26 -15.54 16 9 H 0.06 1.66 6.77 -52.48 -0.36 1.30 16 10 C 0.08 2.15 5.40 -17.82 -0.10 2.05 16 11 N -0.87 -26.11 12.88 55.43 0.71 -25.39 16 12 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 16 C -0.13 -2.46 4.73 -26.59 -0.13 -2.58 16 17 C -0.13 -1.83 5.72 -26.55 -0.15 -1.99 16 18 C -0.15 -2.21 6.14 -26.59 -0.16 -2.38 16 19 C 0.06 0.92 6.52 37.21 0.24 1.16 16 20 O -0.34 -7.26 9.10 -56.54 -0.51 -7.77 16 21 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 22 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 23 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.04 0.59 5.00 -51.93 -0.26 0.33 16 26 H 0.35 9.29 8.62 45.56 0.39 9.68 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.09 1.84 6.69 -51.93 -0.35 1.49 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.76 6.53 -51.93 -0.34 0.42 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.04 0.64 6.44 -51.93 -0.33 0.30 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 276.01 15.07 4.16 4.16 Total: -1.00 -31.40 276.01 -5.88 -37.28 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -4.61 Total: 6.37 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: 0.61 Total: -8.32 kcal Atomic # 7 Polarization: -26.11 SS G_CDS: 0.71 Total: -25.39 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -1.73 Total: -30.85 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.40 -5.88 -37.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535675188.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.025 kcal (2) G-P(sol) polarization free energy of solvation -31.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds