Wall clock time and date at job start Mon Mar 30 2020 03:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 114.00082 * 2 1 4 4 C 1.53004 * 109.47246 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.48798 * 295.89599 * 4 3 2 6 6 H 1.09006 * 109.46949 * 298.19435 * 5 4 3 7 7 O 1.42892 * 109.47109 * 58.19285 * 5 4 3 8 8 C 1.50692 * 109.46920 * 178.19852 * 5 4 3 9 9 H 1.08003 * 120.00451 * 359.05181 * 8 5 4 10 10 C 1.37883 * 120.00075 * 179.05827 * 8 5 4 11 11 N 1.31516 * 119.99846 * 359.97438 * 10 8 5 12 12 Si 1.86800 * 120.00125 * 179.97438 * 10 8 5 13 13 H 1.48497 * 109.47045 * 89.99716 * 12 10 8 14 14 H 1.48498 * 109.47123 * 209.99983 * 12 10 8 15 15 H 1.48502 * 109.46927 * 329.99522 * 12 10 8 16 16 C 1.53092 * 109.48113 * 175.86899 * 4 3 2 17 17 C 1.53183 * 109.15922 * 297.62362 * 16 4 3 18 18 C 1.53170 * 109.03685 * 303.01866 * 17 16 4 19 19 C 1.53094 * 109.16444 * 56.98491 * 18 17 16 20 20 O 1.42900 * 109.48040 * 55.92373 * 4 3 2 21 21 H 1.08995 * 109.46692 * 60.00394 * 1 2 3 22 22 H 1.09001 * 109.47144 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46864 * 300.00222 * 1 2 3 24 24 H 1.09005 * 109.47672 * 59.99696 * 3 2 1 25 25 H 1.09001 * 109.47291 * 299.99801 * 3 2 1 26 26 H 0.96704 * 113.99623 * 60.00598 * 7 5 4 27 27 H 0.96992 * 119.99967 * 179.97438 * 11 10 8 28 28 H 1.09001 * 109.52411 * 177.72215 * 16 4 3 29 29 H 1.08995 * 109.57674 * 57.55772 * 16 4 3 30 30 H 1.09006 * 109.54080 * 183.15629 * 17 16 4 31 31 H 1.09001 * 109.61784 * 62.93512 * 17 16 4 32 32 H 1.08999 * 109.52288 * 176.88597 * 18 17 16 33 33 H 1.08993 * 109.52830 * 297.07793 * 18 17 16 34 34 H 1.09003 * 109.48176 * 62.36700 * 19 18 17 35 35 H 1.08994 * 109.48486 * 182.40596 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9941 0.5166 1.2985 6 1 3.7052 1.1359 2.1477 7 8 3.3802 -0.7685 1.4155 8 6 5.4925 0.3577 1.2794 9 1 6.0594 0.6851 0.4204 10 6 6.1399 -0.2058 2.3586 11 7 5.4496 -0.6041 3.4048 12 14 7.9972 -0.4034 2.3346 13 1 8.6317 0.8121 2.9048 14 1 8.3795 -1.5877 3.1448 15 1 8.4569 -0.5917 0.9352 16 6 4.1582 2.5793 -0.1033 17 6 3.7430 3.2174 -1.4326 18 6 4.1733 2.3015 -2.5824 19 6 3.5500 0.9175 -2.3827 20 8 3.9514 0.3943 -1.1149 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.6886 1.8464 0.8900 25 1 1.6887 1.8463 -0.8900 26 1 3.5938 -1.3737 0.6922 27 1 5.9050 -1.0008 4.1638 28 1 5.2443 2.4973 -0.0622 29 1 3.8080 3.1981 0.7228 30 1 4.2280 4.1879 -1.5384 31 1 2.6608 3.3464 -1.4544 32 1 3.8329 2.7210 -3.5291 33 1 5.2596 2.2138 -2.5914 34 1 2.4636 1.0001 -2.4143 35 1 3.8871 0.2492 -3.1750 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535675188.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:53 Heat of formation + Delta-G solvation = -167.687156 kcal Electronic energy + Delta-G solvation = -17878.031567 eV Core-core repulsion = 15068.327664 eV Total energy + Delta-G solvation = -2809.703903 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.03585 -38.04181 -37.02824 -34.50064 -34.08506 -32.79158 -28.90898 -28.53500 -26.68340 -24.88663 -24.64476 -22.35703 -20.17827 -18.95651 -17.61669 -17.51613 -16.66305 -16.57245 -16.21648 -15.99554 -15.27234 -15.08249 -14.92634 -14.32166 -14.21759 -13.79619 -13.40101 -13.34194 -12.94629 -12.77438 -12.65011 -12.20184 -12.16747 -12.01881 -11.88214 -11.74252 -11.13544 -10.85348 -10.63441 -10.46850 -10.02967 -9.75486 -8.04701 -6.24950 1.40192 1.42205 1.52767 2.44218 2.81611 3.19774 3.33318 3.87633 3.99596 4.04348 4.08441 4.23367 4.33132 4.40518 4.53530 4.57335 4.61605 4.64863 4.74259 4.87484 4.90589 4.93687 5.03381 5.16318 5.23088 5.35089 5.50249 5.67448 5.79781 6.18156 6.43323 6.71223 6.82997 7.44400 7.66313 9.00124 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.025960 B = 0.010896 C = 0.008644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.314978 B = 2569.030119 C = 3238.486235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.385 6.385 3 C 0.049 3.951 4 C 0.104 3.896 5 C 0.246 3.754 6 H 0.027 0.973 7 O -0.562 6.562 8 C -0.553 4.553 9 H 0.057 0.943 10 C 0.020 3.980 11 N -0.906 5.906 12 Si 0.954 3.046 13 H -0.272 1.272 14 H -0.286 1.286 15 H -0.269 1.269 16 C -0.134 4.134 17 C -0.118 4.118 18 C -0.149 4.149 19 C 0.048 3.952 20 O -0.376 6.376 21 H 0.053 0.947 22 H 0.090 0.910 23 H 0.036 0.964 24 H 0.041 0.959 25 H 0.067 0.933 26 H 0.351 0.649 27 H 0.258 0.742 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.564 6.952 -11.418 14.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.303 6.303 3 C -0.028 4.028 4 C 0.064 3.936 5 C 0.188 3.812 6 H 0.044 0.956 7 O -0.364 6.364 8 C -0.591 4.591 9 H 0.075 0.925 10 C -0.181 4.181 11 N -0.545 5.545 12 Si 0.779 3.221 13 H -0.198 1.198 14 H -0.212 1.212 15 H -0.194 1.194 16 C -0.172 4.172 17 C -0.155 4.155 18 C -0.187 4.187 19 C -0.028 4.028 20 O -0.296 6.296 21 H 0.071 0.929 22 H 0.108 0.892 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.085 0.915 26 H 0.195 0.805 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.115 0.885 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.592 6.817 -10.671 14.276 hybrid contribution 0.859 -0.042 0.016 0.860 sum -5.733 6.774 -10.655 13.867 Atomic orbital electron populations 1.22869 0.80992 1.03227 1.00036 1.88094 1.19963 1.27087 1.95169 1.23094 0.94370 0.85467 0.99889 1.22275 0.90503 0.92007 0.88856 1.19161 0.90845 0.82305 0.88863 0.95559 1.86431 1.73823 1.25859 1.50300 1.21896 0.93732 1.41513 1.02006 0.92499 1.25857 1.02404 0.94709 0.95081 1.70214 1.36803 1.40891 1.06570 0.85649 0.80743 0.77613 0.78086 1.19756 1.21231 1.19353 1.21980 1.01649 0.94762 0.98803 1.21665 1.01552 0.99075 0.93212 1.22158 1.01229 0.95756 0.99545 1.22721 0.98496 0.95628 0.85993 1.88040 1.77792 1.49940 1.13795 0.92876 0.89160 0.94522 0.94056 0.91550 0.80482 0.93334 0.91696 0.91506 0.89949 0.90921 0.88492 0.92265 0.93127 0.88624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.95 16 2 O -0.38 -14.86 8.68 -122.40 -1.06 -15.92 16 3 C 0.05 1.76 4.09 71.98 0.29 2.06 16 4 C 0.10 4.30 0.39 -10.76 0.00 4.30 16 5 C 0.25 13.11 2.21 29.85 0.07 13.18 16 6 H 0.03 1.57 8.14 -2.38 -0.02 1.55 16 7 O -0.56 -31.68 10.87 -123.67 -1.34 -33.02 16 8 C -0.55 -31.43 7.63 25.60 0.20 -31.24 16 9 H 0.06 3.20 6.77 -2.91 -0.02 3.18 16 10 C 0.02 1.17 5.40 84.66 0.46 1.63 16 11 N -0.91 -56.15 12.88 21.45 0.28 -55.87 16 12 Si 0.95 45.36 29.54 68.60 2.03 47.38 16 13 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 14 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 15 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 16 C -0.13 -4.83 4.73 30.69 0.15 -4.69 16 17 C -0.12 -3.07 5.72 30.71 0.18 -2.90 16 18 C -0.15 -3.79 6.14 30.68 0.19 -3.60 16 19 C 0.05 1.45 6.52 72.01 0.47 1.92 16 20 O -0.38 -15.71 9.10 -128.60 -1.17 -16.88 16 21 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 22 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 23 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 25 H 0.07 1.97 5.00 -2.39 -0.01 1.96 16 26 H 0.35 19.23 8.62 -74.05 -0.64 18.59 16 27 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 28 H 0.06 2.64 6.69 -2.39 -0.02 2.63 16 29 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.07 1.67 6.53 -2.39 -0.02 1.66 16 32 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.05 1.42 6.44 -2.39 -0.02 1.40 16 35 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -68.95 276.01 2.40 -66.55 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: 0.44 Total: 25.13 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: 3.24 Total: -17.38 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 0.28 Total: -55.87 kcal Atomic # 8 Polarization: -62.24 SS G_CDS: -3.58 Total: -65.82 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -68.95 2.40 -66.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535675188.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.139 kcal (2) G-P(sol) polarization free energy of solvation -68.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds