Wall clock time and date at job start Mon Mar 30 2020 03:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99847 * 2 1 4 4 C 1.52998 * 109.47100 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.48194 * 60.69270 * 4 3 2 6 6 H 1.08999 * 109.47283 * 299.48522 * 5 4 3 7 7 O 1.42902 * 109.46709 * 59.48233 * 5 4 3 8 8 C 1.50699 * 109.47110 * 179.48178 * 5 4 3 9 9 H 1.07998 * 120.00046 * 1.03389 * 8 5 4 10 10 C 1.37883 * 120.00108 * 181.04052 * 8 5 4 11 11 N 1.31510 * 120.00154 * 180.02562 * 10 8 5 12 12 Si 1.86797 * 119.99826 * 359.97438 * 10 8 5 13 13 H 1.48500 * 109.46906 * 90.00152 * 12 10 8 14 14 H 1.48499 * 109.47469 * 210.00617 * 12 10 8 15 15 H 1.48504 * 109.47406 * 330.00689 * 12 10 8 16 16 C 1.53088 * 109.48239 * 180.71736 * 4 3 2 17 17 C 1.53176 * 109.16413 * 62.37474 * 16 4 3 18 18 C 1.53179 * 109.03964 * 56.98115 * 17 16 4 19 19 C 1.53095 * 109.15952 * 303.02299 * 18 17 16 20 20 O 1.42905 * 109.47876 * 300.66984 * 4 3 2 21 21 H 1.09002 * 109.47257 * 60.00002 * 1 2 3 22 22 H 1.09001 * 109.46994 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47255 * 299.99822 * 1 2 3 24 24 H 1.08994 * 109.47362 * 60.00112 * 3 2 1 25 25 H 1.09005 * 109.46821 * 299.99858 * 3 2 1 26 26 H 0.96702 * 114.00242 * 60.00696 * 7 5 4 27 27 H 0.96997 * 119.99767 * 179.97438 * 11 10 8 28 28 H 1.09005 * 109.52647 * 182.27813 * 16 4 3 29 29 H 1.09005 * 109.52232 * 302.40546 * 16 4 3 30 30 H 1.08998 * 109.54908 * 176.85005 * 17 16 4 31 31 H 1.09005 * 109.54329 * 297.02275 * 17 16 4 32 32 H 1.08996 * 109.52058 * 62.92683 * 18 17 16 33 33 H 1.08998 * 109.52227 * 183.11727 * 18 17 16 34 34 H 1.09000 * 109.48060 * 177.59069 * 19 18 17 35 35 H 1.09001 * 109.47969 * 297.61127 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9878 0.4408 -1.2588 6 1 3.5519 -0.5582 -1.2667 7 8 3.5564 1.1580 -2.4171 8 6 5.4909 0.3332 -1.2655 9 1 6.0650 0.7386 -0.4454 10 6 6.1334 -0.2828 -2.3186 11 7 7.4451 -0.3772 -2.3242 12 14 5.1404 -0.9844 -3.7367 13 1 4.9618 0.0578 -4.7793 14 1 5.8593 -2.1471 -4.3170 15 1 3.8105 -1.4218 -3.2412 16 6 4.1583 2.5830 0.0174 17 6 3.7493 3.2991 1.3083 18 6 4.1851 2.4530 2.5086 19 6 3.5611 1.0597 2.3943 20 8 3.9567 0.4618 1.1579 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.6886 1.8464 0.8899 25 1 1.6885 1.8464 -0.8901 26 1 3.9067 2.0574 -2.4760 27 1 7.8969 -0.8108 -3.0649 28 1 5.2443 2.4987 -0.0239 29 1 3.8041 3.1507 -0.8431 30 1 4.2345 4.2740 1.3540 31 1 2.6672 3.4293 1.3259 32 1 5.2715 2.3660 2.5176 33 1 3.8491 2.9281 3.4303 34 1 3.9021 0.4396 3.2233 35 1 2.4749 1.1441 2.4262 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535675189.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:55 Heat of formation + Delta-G solvation = -142.702460 kcal Electronic energy + Delta-G solvation = -17869.827683 eV Core-core repulsion = 15061.207198 eV Total energy + Delta-G solvation = -2808.620485 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.73665 -36.87703 -35.89709 -33.13488 -32.15553 -31.24380 -27.65901 -27.24625 -25.50683 -23.52525 -23.03763 -20.81144 -18.74282 -17.27225 -16.29052 -16.26154 -15.40297 -15.04337 -14.72025 -14.46105 -14.09031 -13.78678 -13.36665 -13.04670 -12.89454 -12.25414 -12.19153 -12.08976 -11.47050 -11.14388 -11.02287 -10.89177 -10.76799 -10.54997 -10.39205 -10.01280 -9.53210 -9.30146 -9.04908 -8.67648 -8.53462 -8.32079 -6.01134 -4.09445 3.53761 3.55541 3.71750 4.03236 4.50809 4.61296 5.10766 5.14086 5.20515 5.31014 5.38542 5.43700 5.51366 5.57987 5.63509 5.73606 5.81410 5.84388 5.89201 6.00247 6.04809 6.10816 6.26533 6.33081 6.45893 6.68274 6.86252 7.41520 7.51012 7.68590 8.04220 8.38445 8.89460 9.08688 9.62513 11.09155 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.025165 B = 0.011684 C = 0.009289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.389878 B = 2395.790850 C = 3013.653000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.371 6.371 3 C 0.038 3.962 4 C 0.111 3.889 5 C 0.207 3.793 6 H 0.077 0.923 7 O -0.579 6.579 8 C -0.541 4.541 9 H 0.080 0.920 10 C 0.079 3.921 11 N -0.895 5.895 12 Si 0.909 3.091 13 H -0.281 1.281 14 H -0.307 1.307 15 H -0.266 1.266 16 C -0.140 4.140 17 C -0.123 4.123 18 C -0.155 4.155 19 C 0.056 3.944 20 O -0.340 6.340 21 H 0.037 0.963 22 H 0.081 0.919 23 H 0.032 0.968 24 H 0.042 0.958 25 H 0.058 0.942 26 H 0.357 0.643 27 H 0.263 0.737 28 H 0.096 0.904 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.156 6.441 6.875 14.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.289 6.289 3 C -0.039 4.039 4 C 0.071 3.929 5 C 0.150 3.850 6 H 0.094 0.906 7 O -0.386 6.386 8 C -0.578 4.578 9 H 0.098 0.902 10 C -0.125 4.125 11 N -0.533 5.533 12 Si 0.740 3.260 13 H -0.207 1.207 14 H -0.236 1.236 15 H -0.191 1.191 16 C -0.177 4.177 17 C -0.161 4.161 18 C -0.192 4.192 19 C -0.022 4.022 20 O -0.258 6.258 21 H 0.055 0.945 22 H 0.100 0.900 23 H 0.050 0.950 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.204 0.796 27 H 0.073 0.927 28 H 0.115 0.885 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.111 5.478 6.664 14.067 hybrid contribution -0.506 0.693 -0.474 0.980 sum -11.617 6.171 6.190 14.538 Atomic orbital electron populations 1.22687 0.82503 1.02214 0.99160 1.88019 1.18247 1.27513 1.95134 1.23270 0.95982 0.84989 0.99652 1.22139 0.88724 0.92640 0.89400 1.19760 0.95164 0.91406 0.78676 0.90580 1.86479 1.75450 1.29982 1.46684 1.21488 0.89757 1.39127 1.07429 0.90164 1.25019 0.94761 0.94326 0.98357 1.69958 1.08008 1.43271 1.32051 0.86312 0.80068 0.77604 0.82064 1.20732 1.23558 1.19095 1.22122 1.03968 0.95024 0.96606 1.21656 1.00247 0.98692 0.95498 1.22183 1.02257 0.96902 0.97907 1.22486 0.97627 0.93617 0.88448 1.88167 1.77094 1.48626 1.11870 0.94481 0.90029 0.94961 0.94009 0.92381 0.79602 0.92745 0.88511 0.91507 0.91969 0.92665 0.90845 0.91930 0.89636 0.94133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.37 -7.07 9.95 -45.38 -0.45 -7.52 16 3 C 0.04 0.67 4.00 37.16 0.15 0.82 16 4 C 0.11 2.26 0.36 -90.57 -0.03 2.23 16 5 C 0.21 5.07 1.72 -27.88 -0.05 5.02 16 6 H 0.08 2.09 6.85 -51.93 -0.36 1.73 16 7 O -0.58 -13.27 10.19 -35.23 -0.36 -13.63 16 8 C -0.54 -15.24 8.25 -34.44 -0.28 -15.53 16 9 H 0.08 2.44 6.92 -52.49 -0.36 2.07 16 10 C 0.08 2.32 5.47 -17.82 -0.10 2.23 16 11 N -0.89 -27.66 13.96 55.43 0.77 -26.88 16 12 Si 0.91 23.92 26.12 -169.99 -4.44 19.48 16 13 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 14 H -0.31 -8.05 7.11 56.52 0.40 -7.65 16 15 H -0.27 -7.07 6.57 56.52 0.37 -6.70 16 16 C -0.14 -2.47 4.34 -26.59 -0.12 -2.58 16 17 C -0.12 -1.76 5.72 -26.55 -0.15 -1.91 16 18 C -0.15 -2.21 6.14 -26.59 -0.16 -2.38 16 19 C 0.06 0.91 6.51 37.21 0.24 1.15 16 20 O -0.34 -7.31 9.72 -45.38 -0.44 -7.75 16 21 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 22 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 23 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.04 0.65 4.98 -51.93 -0.26 0.39 16 25 H 0.06 1.00 7.65 -51.93 -0.40 0.60 16 26 H 0.36 7.07 7.40 45.56 0.34 7.41 16 27 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 28 H 0.10 1.97 6.54 -51.93 -0.34 1.63 16 29 H 0.07 1.06 6.91 -51.93 -0.36 0.70 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.72 6.61 -51.93 -0.34 0.38 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.04 0.62 6.36 -51.93 -0.33 0.29 16 LS Contribution 269.76 15.07 4.07 4.07 Total: -1.00 -32.75 269.76 -4.78 -37.52 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -4.53 Total: 4.13 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: 0.61 Total: -9.40 kcal Atomic # 7 Polarization: -27.66 SS G_CDS: 0.77 Total: -26.88 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -1.25 Total: -28.91 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -4.44 Total: 19.48 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -32.75 -4.78 -37.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535675189.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.180 kcal (2) G-P(sol) polarization free energy of solvation -32.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds