Wall clock time and date at job start Mon Mar 30 2020 03:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99847 * 2 1 4 4 C 1.52998 * 109.47100 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.48194 * 60.69270 * 4 3 2 6 6 H 1.08999 * 109.47283 * 299.48522 * 5 4 3 7 7 O 1.42902 * 109.46709 * 59.48233 * 5 4 3 8 8 C 1.50699 * 109.47110 * 179.48178 * 5 4 3 9 9 H 1.07998 * 120.00046 * 1.03389 * 8 5 4 10 10 C 1.37883 * 120.00108 * 181.04052 * 8 5 4 11 11 N 1.31510 * 120.00154 * 180.02562 * 10 8 5 12 12 Si 1.86797 * 119.99826 * 359.97438 * 10 8 5 13 13 H 1.48500 * 109.46906 * 90.00152 * 12 10 8 14 14 H 1.48499 * 109.47469 * 210.00617 * 12 10 8 15 15 H 1.48504 * 109.47406 * 330.00689 * 12 10 8 16 16 C 1.53088 * 109.48239 * 180.71736 * 4 3 2 17 17 C 1.53176 * 109.16413 * 62.37474 * 16 4 3 18 18 C 1.53179 * 109.03964 * 56.98115 * 17 16 4 19 19 C 1.53095 * 109.15952 * 303.02299 * 18 17 16 20 20 O 1.42905 * 109.47876 * 300.66984 * 4 3 2 21 21 H 1.09002 * 109.47257 * 60.00002 * 1 2 3 22 22 H 1.09001 * 109.46994 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47255 * 299.99822 * 1 2 3 24 24 H 1.08994 * 109.47362 * 60.00112 * 3 2 1 25 25 H 1.09005 * 109.46821 * 299.99858 * 3 2 1 26 26 H 0.96702 * 114.00242 * 60.00696 * 7 5 4 27 27 H 0.96997 * 119.99767 * 179.97438 * 11 10 8 28 28 H 1.09005 * 109.52647 * 182.27813 * 16 4 3 29 29 H 1.09005 * 109.52232 * 302.40546 * 16 4 3 30 30 H 1.08998 * 109.54908 * 176.85005 * 17 16 4 31 31 H 1.09005 * 109.54329 * 297.02275 * 17 16 4 32 32 H 1.08996 * 109.52058 * 62.92683 * 18 17 16 33 33 H 1.08998 * 109.52227 * 183.11727 * 18 17 16 34 34 H 1.09000 * 109.48060 * 177.59069 * 19 18 17 35 35 H 1.09001 * 109.47969 * 297.61127 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9878 0.4408 -1.2588 6 1 3.5519 -0.5582 -1.2667 7 8 3.5564 1.1580 -2.4171 8 6 5.4909 0.3332 -1.2655 9 1 6.0650 0.7386 -0.4454 10 6 6.1334 -0.2828 -2.3186 11 7 7.4451 -0.3772 -2.3242 12 14 5.1404 -0.9844 -3.7367 13 1 4.9618 0.0578 -4.7793 14 1 5.8593 -2.1471 -4.3170 15 1 3.8105 -1.4218 -3.2412 16 6 4.1583 2.5830 0.0174 17 6 3.7493 3.2991 1.3083 18 6 4.1851 2.4530 2.5086 19 6 3.5611 1.0597 2.3943 20 8 3.9567 0.4618 1.1579 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.6886 1.8464 0.8899 25 1 1.6885 1.8464 -0.8901 26 1 3.9067 2.0574 -2.4760 27 1 7.8969 -0.8108 -3.0649 28 1 5.2443 2.4987 -0.0239 29 1 3.8041 3.1507 -0.8431 30 1 4.2345 4.2740 1.3540 31 1 2.6672 3.4293 1.3259 32 1 5.2715 2.3660 2.5176 33 1 3.8491 2.9281 3.4303 34 1 3.9021 0.4396 3.2233 35 1 2.4749 1.1441 2.4262 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535675189.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:55 Heat of formation + Delta-G solvation = -168.554924 kcal Electronic energy + Delta-G solvation = -17870.948730 eV Core-core repulsion = 15061.207198 eV Total energy + Delta-G solvation = -2809.741532 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.19709 -38.18258 -37.71087 -34.52410 -34.34200 -32.72951 -29.26555 -28.85461 -26.73786 -24.90731 -24.73545 -22.39211 -20.14792 -19.32650 -17.83621 -17.64245 -16.99134 -16.58858 -16.30807 -16.04502 -15.43355 -15.18403 -15.11239 -14.73461 -14.43423 -13.91423 -13.67739 -13.39692 -13.16568 -12.87363 -12.64223 -12.28430 -12.25100 -12.06421 -11.89179 -11.62367 -11.24701 -11.02524 -10.81259 -10.50269 -10.24204 -10.05154 -8.29876 -6.40077 1.40060 1.42665 1.59304 2.41156 2.70692 2.99648 3.25645 3.82646 3.88386 3.96695 4.02289 4.16911 4.19170 4.30600 4.40510 4.52915 4.55434 4.63278 4.67294 4.82256 4.83741 4.85333 4.99380 5.11467 5.21068 5.30333 5.43170 5.49624 5.58205 6.16811 6.31758 6.57932 6.74474 7.12709 7.36266 8.84312 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.025165 B = 0.011684 C = 0.009289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.389878 B = 2395.790850 C = 3013.653000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.045 3.955 4 C 0.109 3.891 5 C 0.214 3.786 6 H 0.044 0.956 7 O -0.578 6.578 8 C -0.534 4.534 9 H 0.046 0.954 10 C 0.026 3.974 11 N -0.939 5.939 12 Si 0.968 3.032 13 H -0.269 1.269 14 H -0.305 1.305 15 H -0.271 1.271 16 C -0.137 4.137 17 C -0.117 4.117 18 C -0.152 4.152 19 C 0.048 3.952 20 O -0.384 6.384 21 H 0.045 0.955 22 H 0.091 0.909 23 H 0.056 0.944 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.373 0.627 27 H 0.265 0.735 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.580 7.883 7.388 17.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.329 6.329 3 C -0.031 4.031 4 C 0.070 3.930 5 C 0.157 3.843 6 H 0.062 0.938 7 O -0.386 6.386 8 C -0.571 4.571 9 H 0.064 0.936 10 C -0.173 4.173 11 N -0.579 5.579 12 Si 0.797 3.203 13 H -0.194 1.194 14 H -0.233 1.233 15 H -0.197 1.197 16 C -0.175 4.175 17 C -0.154 4.154 18 C -0.189 4.189 19 C -0.029 4.029 20 O -0.304 6.304 21 H 0.064 0.936 22 H 0.109 0.891 23 H 0.074 0.926 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.222 0.778 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.548 6.942 7.183 16.833 hybrid contribution 0.241 0.236 -0.551 0.646 sum -13.307 7.179 6.632 16.511 Atomic orbital electron populations 1.22921 0.79965 1.03515 1.00731 1.87971 1.21127 1.28350 1.95455 1.23172 0.93643 0.85037 1.01260 1.21970 0.90979 0.92834 0.87267 1.19377 0.92136 0.91255 0.81548 0.93813 1.86381 1.75097 1.31042 1.46105 1.21706 0.91926 1.37662 1.05841 0.93561 1.25771 0.95500 0.95053 1.00940 1.70069 1.09497 1.45096 1.33230 0.85379 0.78213 0.77218 0.79504 1.19435 1.23342 1.19655 1.22044 1.01385 0.94381 0.99702 1.21655 1.01834 0.98898 0.93051 1.22172 1.00942 0.96030 0.99777 1.22760 0.98793 0.94799 0.86502 1.88079 1.78108 1.50433 1.13769 0.93589 0.89057 0.92568 0.91155 0.91702 0.77843 0.92566 0.92367 0.89813 0.89948 0.90292 0.92903 0.88250 0.88832 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 11.01 113.37 1.25 1.86 16 2 O -0.41 -14.89 9.95 -139.27 -1.39 -16.27 16 3 C 0.05 1.49 4.00 71.98 0.29 1.78 16 4 C 0.11 4.37 0.36 -10.76 0.00 4.37 16 5 C 0.21 10.58 1.72 29.85 0.05 10.63 16 6 H 0.04 2.45 6.85 -2.39 -0.02 2.43 16 7 O -0.58 -25.85 10.19 -148.98 -1.52 -27.37 16 8 C -0.53 -31.05 8.25 25.60 0.21 -30.84 16 9 H 0.05 2.96 6.92 -2.91 -0.02 2.94 16 10 C 0.03 1.59 5.47 84.66 0.46 2.05 16 11 N -0.94 -59.72 13.96 21.45 0.30 -59.42 16 12 Si 0.97 50.00 26.12 68.60 1.79 51.79 16 13 H -0.27 -13.25 7.11 99.48 0.71 -12.54 16 14 H -0.31 -15.53 7.11 99.48 0.71 -14.82 16 15 H -0.27 -14.15 6.57 99.48 0.65 -13.49 16 16 C -0.14 -4.70 4.34 30.68 0.13 -4.56 16 17 C -0.12 -2.96 5.72 30.71 0.18 -2.78 16 18 C -0.15 -3.96 6.14 30.69 0.19 -3.77 16 19 C 0.05 1.48 6.51 72.01 0.47 1.94 16 20 O -0.38 -16.61 9.72 -139.27 -1.35 -17.96 16 21 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 23 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.07 1.89 4.98 -2.39 -0.01 1.88 16 25 H 0.06 2.02 7.65 -2.38 -0.02 2.00 16 26 H 0.37 14.22 7.40 -74.06 -0.55 13.67 16 27 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 28 H 0.06 2.42 6.54 -2.38 -0.02 2.41 16 29 H 0.08 2.49 6.91 -2.38 -0.02 2.48 16 30 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.08 1.66 6.61 -2.38 -0.02 1.64 16 32 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.06 1.56 6.36 -2.39 -0.02 1.55 16 Total: -1.00 -72.85 269.76 1.54 -71.31 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.48 Total: 17.23 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: 3.22 Total: -19.31 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: 0.30 Total: -59.42 kcal Atomic # 8 Polarization: -57.35 SS G_CDS: -4.26 Total: -61.61 kcal Atomic # 14 Polarization: 50.00 SS G_CDS: 1.79 Total: 51.79 kcal Total: -72.85 1.54 -71.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535675189.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.247 kcal (2) G-P(sol) polarization free energy of solvation -72.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds