Wall clock time and date at job start Mon Mar 30 2020 03:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42894 * 114.00208 * 2 1 4 4 C 1.53009 * 109.47210 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.48803 * 300.87626 * 4 3 2 6 6 H 1.09002 * 109.46854 * 59.43426 * 5 4 3 7 7 O 1.42899 * 109.47267 * 299.43306 * 5 4 3 8 8 C 1.50699 * 109.46967 * 179.43290 * 5 4 3 9 9 H 1.08009 * 120.00134 * 5.25398 * 8 5 4 10 10 C 1.37873 * 119.99919 * 185.25112 * 8 5 4 11 11 N 1.31514 * 120.00228 * 0.02562 * 10 8 5 12 12 Si 1.86801 * 119.99785 * 180.02562 * 10 8 5 13 13 H 1.48504 * 109.47368 * 60.00467 * 12 10 8 14 14 H 1.48508 * 109.47061 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47387 * 299.99796 * 12 10 8 16 16 C 1.53092 * 109.48031 * 180.84821 * 4 3 2 17 17 C 1.53177 * 109.16477 * 297.62571 * 16 4 3 18 18 C 1.53180 * 109.03424 * 303.02371 * 17 16 4 19 19 C 1.53082 * 109.16840 * 56.98060 * 18 17 16 20 20 O 1.42905 * 109.47972 * 60.90688 * 4 3 2 21 21 H 1.08996 * 109.47147 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46559 * 299.99899 * 1 2 3 23 23 H 1.08998 * 109.47104 * 59.99700 * 1 2 3 24 24 H 1.08999 * 109.47342 * 60.00233 * 3 2 1 25 25 H 1.08996 * 109.47296 * 299.99826 * 3 2 1 26 26 H 0.96702 * 114.00104 * 300.00470 * 7 5 4 27 27 H 0.96999 * 120.00275 * 179.97438 * 11 10 8 28 28 H 1.09004 * 109.52208 * 57.53081 * 16 4 3 29 29 H 1.08993 * 109.51909 * 177.65732 * 16 4 3 30 30 H 1.08996 * 109.54555 * 183.15643 * 17 16 4 31 31 H 1.09002 * 109.54520 * 62.88731 * 17 16 4 32 32 H 1.09001 * 109.52220 * 297.06754 * 18 17 16 33 33 H 1.09004 * 109.51959 * 176.88771 * 18 17 16 34 34 H 1.09000 * 109.48524 * 62.36987 * 19 18 17 35 35 H 1.09001 * 109.48353 * 182.39999 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 6 3.9864 0.4061 1.2370 6 1 3.5352 -0.5861 1.2264 7 8 3.5755 1.1038 2.4144 8 6 5.4877 0.2753 1.2287 9 1 6.0693 0.7758 0.4686 10 6 6.1189 -0.4833 2.1916 11 7 5.4108 -1.0931 3.1170 12 14 7.9799 -0.6448 2.1818 13 1 8.5943 0.6996 2.3246 14 1 8.4078 -1.5077 3.3121 15 1 8.4170 -1.2553 0.9006 16 6 4.1585 2.5828 0.0207 17 6 3.7512 3.3342 -1.2504 18 6 4.1886 2.5215 -2.4730 19 6 3.5645 1.1257 -2.3981 20 8 3.9584 0.4941 -1.1782 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.6887 1.8463 0.8900 25 1 1.6887 1.8463 -0.8900 26 1 3.9401 1.9963 2.4901 27 1 5.8548 -1.6271 3.7941 28 1 3.8022 3.1270 0.8955 29 1 5.2442 2.4972 0.0623 30 1 4.2366 4.3100 -1.2686 31 1 2.6690 3.4635 -1.2667 32 1 5.2751 2.4347 -2.4830 33 1 3.8539 3.0219 -3.3817 34 1 2.4782 1.2110 -2.4289 35 1 3.9064 0.5287 -3.2436 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535675190.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:57 Heat of formation + Delta-G solvation = -145.460384 kcal Electronic energy + Delta-G solvation = -17805.420498 eV Core-core repulsion = 14996.680421 eV Total energy + Delta-G solvation = -2808.740077 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.60561 -36.75390 -35.46921 -33.08093 -32.03866 -31.05773 -27.55376 -26.75776 -25.38646 -23.48282 -23.10587 -20.82101 -18.68546 -16.94830 -16.16979 -16.04592 -15.27130 -14.92706 -14.56727 -14.35418 -13.99881 -13.71236 -13.50288 -12.85521 -12.67852 -12.15987 -12.00928 -11.85491 -11.09897 -11.01326 -10.93093 -10.84364 -10.73177 -10.55848 -10.44076 -10.00251 -9.76210 -9.21505 -8.89662 -8.58256 -8.37189 -8.03049 -5.88332 -4.02213 3.37527 3.42360 3.45187 4.17064 4.49973 4.62222 5.14792 5.19142 5.24755 5.41052 5.50148 5.53544 5.60926 5.66374 5.73233 5.85233 5.91417 5.96311 5.99777 6.04644 6.17018 6.28153 6.32416 6.42237 6.59762 6.82418 6.89067 7.66909 7.82048 7.97967 8.18190 8.33538 9.00219 9.40148 9.69908 11.17238 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.025094 B = 0.010735 C = 0.008770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.551855 B = 2607.644642 C = 3191.880500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.368 6.368 3 C 0.041 3.959 4 C 0.100 3.900 5 C 0.247 3.753 6 H 0.077 0.923 7 O -0.561 6.561 8 C -0.549 4.549 9 H 0.059 0.941 10 C 0.077 3.923 11 N -0.866 5.866 12 Si 0.888 3.112 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.276 1.276 16 C -0.139 4.139 17 C -0.124 4.124 18 C -0.154 4.154 19 C 0.054 3.946 20 O -0.340 6.340 21 H 0.081 0.919 22 H 0.036 0.964 23 H 0.030 0.970 24 H 0.056 0.944 25 H 0.038 0.962 26 H 0.340 0.660 27 H 0.259 0.741 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.040 0.960 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.183 7.577 -8.383 12.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.286 6.286 3 C -0.036 4.036 4 C 0.060 3.940 5 C 0.189 3.811 6 H 0.095 0.905 7 O -0.364 6.364 8 C -0.587 4.587 9 H 0.077 0.923 10 C -0.128 4.128 11 N -0.502 5.502 12 Si 0.716 3.284 13 H -0.203 1.203 14 H -0.214 1.214 15 H -0.202 1.202 16 C -0.177 4.177 17 C -0.162 4.162 18 C -0.192 4.192 19 C -0.024 4.024 20 O -0.258 6.258 21 H 0.099 0.901 22 H 0.055 0.945 23 H 0.048 0.952 24 H 0.074 0.926 25 H 0.056 0.944 26 H 0.184 0.816 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.109 0.891 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.295 6.540 -8.105 12.169 hybrid contribution 0.917 0.937 -0.253 1.335 sum -5.379 7.477 -8.358 12.437 Atomic orbital electron populations 1.22674 0.82683 1.02159 0.98999 1.88042 1.18072 1.27408 1.95072 1.23220 0.96125 0.84964 0.99257 1.22476 0.88805 0.93038 0.89656 1.19221 0.93944 0.90922 0.76964 0.90544 1.86680 1.74232 1.30037 1.45467 1.21546 0.92107 1.32167 1.12899 0.92278 1.25037 0.97839 0.94696 0.95277 1.70056 1.35075 1.30459 1.14654 0.86753 0.86202 0.77967 0.77499 1.20333 1.21391 1.20179 1.22112 1.03450 0.95409 0.96718 1.21663 1.00355 0.98593 0.95545 1.22179 1.02012 0.97148 0.97838 1.22476 0.97707 0.93114 0.89068 1.88169 1.77047 1.48748 1.11840 0.90061 0.94499 0.95172 0.92556 0.94447 0.81555 0.93082 0.91448 0.89118 0.92127 0.92601 0.91085 0.92026 0.94150 0.89806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.37 -7.53 9.89 -44.05 -0.44 -7.97 16 3 C 0.04 0.78 4.01 37.16 0.15 0.93 16 4 C 0.10 2.13 0.37 -90.57 -0.03 2.09 16 5 C 0.25 6.47 2.14 -27.88 -0.06 6.41 16 6 H 0.08 2.35 7.64 -51.93 -0.40 1.95 16 7 O -0.56 -14.42 12.35 -35.23 -0.44 -14.85 16 8 C -0.55 -15.38 7.71 -34.44 -0.27 -15.64 16 9 H 0.06 1.63 6.56 -52.48 -0.34 1.28 16 10 C 0.08 2.20 5.43 -17.82 -0.10 2.10 16 11 N -0.87 -26.32 13.06 55.43 0.72 -25.59 16 12 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 C -0.14 -2.51 4.33 -26.59 -0.12 -2.63 16 17 C -0.12 -1.80 5.72 -26.55 -0.15 -1.95 16 18 C -0.15 -2.22 6.13 -26.60 -0.16 -2.38 16 19 C 0.05 0.90 6.52 37.20 0.24 1.14 16 20 O -0.34 -7.49 9.75 -44.05 -0.43 -7.92 16 21 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 22 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 1.05 7.73 -51.93 -0.40 0.65 16 25 H 0.04 0.62 4.97 -51.93 -0.26 0.36 16 26 H 0.34 7.58 7.37 45.56 0.34 7.91 16 27 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.07 1.13 6.90 -51.93 -0.36 0.77 16 29 H 0.09 1.80 6.49 -51.93 -0.34 1.47 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.76 6.64 -51.93 -0.34 0.41 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.04 0.64 6.32 -51.93 -0.33 0.31 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 275.19 15.07 4.15 4.15 Total: -1.00 -32.45 275.19 -5.36 -37.81 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -4.53 Total: 5.89 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: 0.62 Total: -8.33 kcal Atomic # 7 Polarization: -26.32 SS G_CDS: 0.72 Total: -25.59 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -1.30 Total: -30.74 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.45 -5.36 -37.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535675190.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.646 kcal (2) G-P(sol) polarization free energy of solvation -32.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds