Wall clock time and date at job start Mon Mar 30 2020 03:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42894 * 114.00208 * 2 1 4 4 C 1.53009 * 109.47210 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.48803 * 300.87626 * 4 3 2 6 6 H 1.09002 * 109.46854 * 59.43426 * 5 4 3 7 7 O 1.42899 * 109.47267 * 299.43306 * 5 4 3 8 8 C 1.50699 * 109.46967 * 179.43290 * 5 4 3 9 9 H 1.08009 * 120.00134 * 5.25398 * 8 5 4 10 10 C 1.37873 * 119.99919 * 185.25112 * 8 5 4 11 11 N 1.31514 * 120.00228 * 0.02562 * 10 8 5 12 12 Si 1.86801 * 119.99785 * 180.02562 * 10 8 5 13 13 H 1.48504 * 109.47368 * 60.00467 * 12 10 8 14 14 H 1.48508 * 109.47061 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47387 * 299.99796 * 12 10 8 16 16 C 1.53092 * 109.48031 * 180.84821 * 4 3 2 17 17 C 1.53177 * 109.16477 * 297.62571 * 16 4 3 18 18 C 1.53180 * 109.03424 * 303.02371 * 17 16 4 19 19 C 1.53082 * 109.16840 * 56.98060 * 18 17 16 20 20 O 1.42905 * 109.47972 * 60.90688 * 4 3 2 21 21 H 1.08996 * 109.47147 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46559 * 299.99899 * 1 2 3 23 23 H 1.08998 * 109.47104 * 59.99700 * 1 2 3 24 24 H 1.08999 * 109.47342 * 60.00233 * 3 2 1 25 25 H 1.08996 * 109.47296 * 299.99826 * 3 2 1 26 26 H 0.96702 * 114.00104 * 300.00470 * 7 5 4 27 27 H 0.96999 * 120.00275 * 179.97438 * 11 10 8 28 28 H 1.09004 * 109.52208 * 57.53081 * 16 4 3 29 29 H 1.08993 * 109.51909 * 177.65732 * 16 4 3 30 30 H 1.08996 * 109.54555 * 183.15643 * 17 16 4 31 31 H 1.09002 * 109.54520 * 62.88731 * 17 16 4 32 32 H 1.09001 * 109.52220 * 297.06754 * 18 17 16 33 33 H 1.09004 * 109.51959 * 176.88771 * 18 17 16 34 34 H 1.09000 * 109.48524 * 62.36987 * 19 18 17 35 35 H 1.09001 * 109.48353 * 182.39999 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 6 3.9864 0.4061 1.2370 6 1 3.5352 -0.5861 1.2264 7 8 3.5755 1.1038 2.4144 8 6 5.4877 0.2753 1.2287 9 1 6.0693 0.7758 0.4686 10 6 6.1189 -0.4833 2.1916 11 7 5.4108 -1.0931 3.1170 12 14 7.9799 -0.6448 2.1818 13 1 8.5943 0.6996 2.3246 14 1 8.4078 -1.5077 3.3121 15 1 8.4170 -1.2553 0.9006 16 6 4.1585 2.5828 0.0207 17 6 3.7512 3.3342 -1.2504 18 6 4.1886 2.5215 -2.4730 19 6 3.5645 1.1257 -2.3981 20 8 3.9584 0.4941 -1.1782 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.6887 1.8463 0.8900 25 1 1.6887 1.8463 -0.8900 26 1 3.9401 1.9963 2.4901 27 1 5.8548 -1.6271 3.7941 28 1 3.8022 3.1270 0.8955 29 1 5.2442 2.4972 0.0623 30 1 4.2366 4.3100 -1.2686 31 1 2.6690 3.4635 -1.2667 32 1 5.2751 2.4347 -2.4830 33 1 3.8539 3.0219 -3.3817 34 1 2.4782 1.2110 -2.4289 35 1 3.9064 0.5287 -3.2436 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535675190.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:56 Heat of formation + Delta-G solvation = -170.674553 kcal Electronic energy + Delta-G solvation = -17806.513867 eV Core-core repulsion = 14996.680421 eV Total energy + Delta-G solvation = -2809.833446 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.11623 -38.17648 -37.40493 -34.48569 -34.18448 -32.61092 -28.95082 -28.69325 -26.73607 -25.05667 -24.72392 -22.38980 -20.13755 -18.99298 -17.71965 -17.57892 -16.77503 -16.61171 -16.28613 -16.03213 -15.38651 -15.20315 -15.05984 -14.46658 -14.25437 -13.86067 -13.37446 -13.34446 -12.90601 -12.78159 -12.70137 -12.28462 -12.23670 -12.11508 -11.87548 -11.75219 -11.21263 -10.92696 -10.65347 -10.48115 -10.05397 -9.95808 -8.07467 -6.28417 1.40159 1.43593 1.50932 2.43129 2.77259 3.10896 3.31962 3.87706 3.96363 4.04887 4.06836 4.21297 4.28959 4.37643 4.46327 4.51209 4.56295 4.68103 4.70156 4.80657 4.88106 4.90593 5.03084 5.14900 5.21360 5.35546 5.48298 5.70288 5.80992 6.15508 6.34669 6.64858 6.85012 7.38290 7.55358 8.98413 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.025094 B = 0.010735 C = 0.008770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.551855 B = 2607.644642 C = 3191.880500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.047 3.953 4 C 0.104 3.896 5 C 0.250 3.750 6 H 0.018 0.982 7 O -0.574 6.574 8 C -0.555 4.555 9 H 0.060 0.940 10 C 0.019 3.981 11 N -0.909 5.909 12 Si 0.957 3.043 13 H -0.263 1.263 14 H -0.286 1.286 15 H -0.274 1.274 16 C -0.136 4.136 17 C -0.118 4.118 18 C -0.149 4.149 19 C 0.045 3.955 20 O -0.383 6.383 21 H 0.090 0.910 22 H 0.043 0.957 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.069 0.931 26 H 0.355 0.645 27 H 0.259 0.741 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.098 0.902 34 H 0.051 0.949 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.221 9.546 -10.016 15.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C -0.030 4.030 4 C 0.064 3.936 5 C 0.192 3.808 6 H 0.036 0.964 7 O -0.379 6.379 8 C -0.593 4.593 9 H 0.078 0.922 10 C -0.182 4.182 11 N -0.547 5.547 12 Si 0.782 3.218 13 H -0.188 1.188 14 H -0.211 1.211 15 H -0.199 1.199 16 C -0.174 4.174 17 C -0.155 4.155 18 C -0.187 4.187 19 C -0.031 4.031 20 O -0.302 6.302 21 H 0.109 0.891 22 H 0.061 0.939 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.201 0.799 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.069 0.931 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.338 8.535 -9.756 14.429 hybrid contribution 0.850 0.288 0.219 0.924 sum -5.488 8.823 -9.537 14.104 Atomic orbital electron populations 1.22909 0.80124 1.03449 1.00605 1.87995 1.21056 1.28523 1.95390 1.23160 0.94455 0.84805 1.00542 1.22157 0.90568 0.93477 0.87429 1.18840 0.92658 0.89660 0.79607 0.96428 1.86587 1.74323 1.31104 1.45917 1.21873 0.93359 1.31591 1.12449 0.92184 1.25923 1.02843 0.94439 0.94983 1.70211 1.37109 1.31718 1.15685 0.85657 0.80246 0.78510 0.77402 1.18766 1.21125 1.19912 1.22037 1.01659 0.94130 0.99545 1.21661 1.01617 0.99012 0.93216 1.22160 1.01249 0.95825 0.99444 1.22774 0.98627 0.94626 0.87122 1.88076 1.77884 1.50659 1.13575 0.89124 0.93880 0.92405 0.92672 0.91357 0.79877 0.93211 0.90485 0.91531 0.89627 0.90929 0.92160 0.88355 0.93090 0.88643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.01 113.37 1.25 1.98 16 2 O -0.41 -16.84 9.89 -140.55 -1.39 -18.23 16 3 C 0.05 1.73 4.01 71.99 0.29 2.02 16 4 C 0.10 4.38 0.37 -10.76 0.00 4.38 16 5 C 0.25 13.57 2.14 29.85 0.06 13.63 16 6 H 0.02 1.16 7.64 -2.39 -0.02 1.14 16 7 O -0.57 -30.34 12.35 -148.98 -1.84 -32.18 16 8 C -0.55 -31.83 7.71 25.60 0.20 -31.64 16 9 H 0.06 3.36 6.56 -2.91 -0.02 3.34 16 10 C 0.02 1.11 5.43 84.65 0.46 1.57 16 11 N -0.91 -57.08 13.06 21.45 0.28 -56.80 16 12 Si 0.96 45.46 29.54 68.60 2.03 47.49 16 13 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 14 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 15 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 16 C -0.14 -4.72 4.33 30.68 0.13 -4.59 16 17 C -0.12 -2.99 5.72 30.71 0.18 -2.81 16 18 C -0.15 -3.78 6.13 30.68 0.19 -3.59 16 19 C 0.04 1.40 6.52 72.01 0.47 1.87 16 20 O -0.38 -16.85 9.75 -140.55 -1.37 -18.22 16 21 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 22 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.06 2.00 7.73 -2.39 -0.02 1.98 16 25 H 0.07 2.06 4.97 -2.39 -0.01 2.05 16 26 H 0.36 16.03 7.37 -74.06 -0.55 15.49 16 27 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 28 H 0.08 2.45 6.90 -2.38 -0.02 2.44 16 29 H 0.07 2.61 6.49 -2.39 -0.02 2.59 16 30 H 0.09 1.79 8.14 -2.39 -0.02 1.78 16 31 H 0.07 1.63 6.64 -2.39 -0.02 1.61 16 32 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.05 1.46 6.32 -2.39 -0.02 1.45 16 35 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -72.95 275.19 1.46 -71.49 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.54 Total: 23.63 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: 3.22 Total: -17.18 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: 0.28 Total: -56.80 kcal Atomic # 8 Polarization: -64.04 SS G_CDS: -4.60 Total: -68.64 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -72.95 1.46 -71.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535675190.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.185 kcal (2) G-P(sol) polarization free energy of solvation -72.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds