Wall clock time and date at job start Mon Mar 30 2020 02:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31106 * 1 3 3 Si 1.86805 * 119.99685 * 2 1 4 4 H 1.48495 * 109.47087 * 275.17636 * 3 2 1 5 5 H 1.48503 * 109.46925 * 35.17271 * 3 2 1 6 6 H 1.48494 * 109.47286 * 155.17265 * 3 2 1 7 7 C 1.39362 * 120.00638 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00080 * 336.69415 * 7 2 1 9 9 N 1.36497 * 120.00387 * 156.96775 * 7 2 1 10 10 C 1.37596 * 126.52011 * 140.18223 * 9 7 2 11 11 C 1.46715 * 125.21382 * 0.04622 * 10 9 7 12 12 O 1.21313 * 120.00169 * 185.20326 * 11 10 9 13 13 N 1.31464 * 109.57421 * 180.02562 * 10 9 7 14 14 C 1.34360 * 109.82120 * 0.02562 * 13 10 9 15 15 C 1.40184 * 133.17420 * 180.02562 * 14 13 10 16 16 C 1.38127 * 119.69627 * 179.97438 * 15 14 13 17 17 N 1.39755 * 119.77756 * 180.02562 * 16 15 14 18 18 C 1.39566 * 120.44058 * 359.97438 * 16 15 14 19 19 C 1.37714 * 120.46765 * 359.97438 * 18 16 15 20 20 C 1.37937 * 126.51895 * 319.87935 * 9 7 2 21 21 H 0.96998 * 120.00193 * 0.02562 * 1 2 3 22 22 H 1.08007 * 119.99723 * 5.19817 * 11 10 9 23 23 H 1.08000 * 120.15624 * 359.93032 * 15 14 13 24 24 H 0.96995 * 120.00415 * 359.97438 * 17 16 15 25 25 H 0.97000 * 119.99806 * 180.02562 * 17 16 15 26 26 H 1.08007 * 119.76446 * 180.02562 * 18 16 15 27 27 H 1.07999 * 120.01156 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3111 0.0000 0.0000 3 14 2.2450 1.6178 0.0000 4 1 2.3831 2.1097 -1.3943 5 1 1.5013 2.6187 0.8065 6 1 3.5929 1.4113 0.5878 7 6 2.0080 -1.2068 -0.0005 8 1 1.5342 -2.1042 0.3691 9 7 3.2914 -1.2537 -0.4630 10 6 4.3305 -1.9760 0.0770 11 6 4.2372 -2.8357 1.2623 12 8 5.2354 -3.3566 1.7139 13 7 5.4197 -1.7782 -0.6320 14 6 5.1566 -0.9373 -1.6464 15 6 5.9411 -0.4045 -2.6787 16 6 5.3717 0.4570 -3.5961 17 7 6.1521 0.9888 -4.6262 18 6 4.0219 0.7991 -3.5016 19 6 3.2394 0.2821 -2.4932 20 6 3.7918 -0.5905 -1.5641 21 1 -0.4850 0.8400 -0.0004 22 1 3.2798 -3.0046 1.7328 23 1 6.9862 -0.6657 -2.7561 24 1 7.0905 0.7530 -4.6951 25 1 5.7556 1.5944 -5.2719 26 1 3.5878 1.4734 -4.2251 27 1 2.1956 0.5515 -2.4273 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076080885.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:20 Heat of formation + Delta-G solvation = 45.138198 kcal Electronic energy + Delta-G solvation = -15585.728774 eV Core-core repulsion = 12923.596337 eV Total energy + Delta-G solvation = -2662.132437 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.075 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.17643 -38.09966 -37.11674 -34.38077 -33.00864 -32.12351 -29.02167 -27.85551 -25.51795 -24.42650 -21.45298 -21.14744 -19.35384 -18.31443 -17.19280 -16.53157 -15.73919 -15.58575 -14.74343 -14.50891 -14.44458 -13.51660 -13.26768 -13.20308 -13.09445 -12.84276 -12.18550 -11.92621 -11.38869 -11.22622 -10.55409 -10.53027 -10.08089 -9.39182 -9.30429 -8.99032 -8.89921 -7.36738 -7.21184 -6.75847 -4.77643 1.29906 2.46133 2.61205 2.85988 2.99104 3.10016 3.71931 3.84026 4.02786 4.26748 4.51378 4.74133 4.79362 5.43779 5.67257 5.90971 6.08413 6.15847 6.20434 6.34760 6.71468 6.86084 6.98176 7.22379 7.27378 7.54039 7.71743 7.92232 8.08089 8.19611 8.30040 8.81780 8.99661 9.83089 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.019306 B = 0.014433 C = 0.009049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.984245 B = 1939.551451 C = 3093.370893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.088 3.912 3 Si 0.869 3.131 4 H -0.242 1.242 5 H -0.276 1.276 6 H -0.254 1.254 7 C -0.354 4.354 8 H 0.130 0.870 9 N -0.253 5.253 10 C 0.095 3.905 11 C 0.432 3.568 12 O -0.462 6.462 13 N -0.476 5.476 14 C 0.087 3.913 15 C -0.172 4.172 16 C 0.195 3.805 17 N -0.886 5.886 18 C -0.189 4.189 19 C -0.041 4.041 20 C -0.036 4.036 21 H 0.292 0.708 22 H 0.118 0.882 23 H 0.115 0.885 24 H 0.392 0.608 25 H 0.391 0.609 26 H 0.117 0.883 27 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.725 4.006 -5.378 7.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.130 4.130 3 Si 0.692 3.308 4 H -0.166 1.166 5 H -0.202 1.202 6 H -0.178 1.178 7 C -0.483 4.483 8 H 0.147 0.853 9 N 0.075 4.925 10 C -0.158 4.158 11 C 0.289 3.711 12 O -0.331 6.331 13 N -0.202 5.202 14 C -0.045 4.045 15 C -0.199 4.199 16 C 0.091 3.909 17 N -0.428 5.428 18 C -0.212 4.212 19 C -0.061 4.061 20 C -0.152 4.152 21 H 0.103 0.897 22 H 0.134 0.866 23 H 0.133 0.867 24 H 0.220 0.780 25 H 0.218 0.782 26 H 0.135 0.865 27 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.554 3.322 -4.680 6.751 hybrid contribution -0.616 1.456 -0.474 1.651 sum 2.939 4.778 -5.154 7.618 Atomic orbital electron populations 1.69620 1.06880 1.30481 1.35825 1.25535 0.95216 0.99764 0.92532 0.86970 0.81363 0.81560 0.80933 1.16642 1.20212 1.17753 1.19452 0.85070 0.98778 1.45035 0.85269 1.41277 1.07842 1.28631 1.14761 1.24016 0.83282 1.06823 1.01634 1.22821 0.93236 0.75022 0.80018 1.90487 1.41385 1.41328 1.59887 1.70108 1.24931 1.18407 1.06780 1.18455 0.91060 0.98476 0.96555 1.19208 0.98913 1.04813 0.96928 1.17193 0.90351 0.94122 0.89217 1.42219 1.12262 1.55836 1.32471 1.20172 0.92560 1.06742 1.01726 1.19909 0.99404 0.94311 0.92516 1.18977 0.96213 1.06303 0.93734 0.89707 0.86638 0.86722 0.78045 0.78162 0.86477 0.86036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.23 13.94 55.51 0.77 -18.46 15 2 C 0.09 2.09 4.91 -17.44 -0.09 2.00 15 3 Si 0.87 19.02 24.48 -169.99 -4.16 14.86 15 4 H -0.24 -5.00 5.50 56.52 0.31 -4.69 15 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 15 6 H -0.25 -6.11 7.11 56.52 0.40 -5.71 15 7 C -0.35 -8.56 9.83 -15.06 -0.15 -8.71 15 8 H 0.13 3.08 8.02 -52.48 -0.42 2.66 15 9 N -0.25 -6.16 2.43 -57.41 -0.14 -6.30 15 10 C 0.09 2.27 7.69 -154.08 -1.19 1.08 15 11 C 0.43 8.93 11.32 34.15 0.39 9.32 15 12 O -0.46 -10.45 17.89 5.53 0.10 -10.35 15 13 N -0.48 -12.02 11.20 -8.88 -0.10 -12.12 15 14 C 0.09 2.08 7.19 -84.96 -0.61 1.47 15 15 C -0.17 -3.46 9.94 -38.89 -0.39 -3.85 15 16 C 0.20 3.43 6.74 -83.79 -0.56 2.86 15 17 N -0.89 -11.21 9.09 32.40 0.29 -10.91 15 18 C -0.19 -3.44 9.87 -39.28 -0.39 -3.83 15 19 C -0.04 -0.88 6.83 -39.52 -0.27 -1.15 15 20 C -0.04 -0.87 5.29 -83.80 -0.44 -1.31 15 21 H 0.29 6.39 8.30 -40.82 -0.34 6.06 15 22 H 0.12 1.94 7.88 -52.48 -0.41 1.53 15 23 H 0.11 2.10 8.06 -52.49 -0.42 1.68 15 24 H 0.39 4.22 8.83 -40.82 -0.36 3.86 15 25 H 0.39 3.99 8.84 -40.82 -0.36 3.63 15 26 H 0.12 1.76 8.06 -52.48 -0.42 1.34 15 27 H 0.12 2.58 5.78 -52.49 -0.30 2.27 15 LS Contribution 242.12 15.07 3.65 3.65 Total: -1.00 -29.32 242.12 -5.21 -34.53 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -1.93 Total: 7.21 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -3.70 Total: -2.10 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: 0.83 Total: -47.80 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.10 Total: -10.35 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -4.16 Total: 14.86 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -29.32 -5.21 -34.53 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076080885.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.669 kcal (2) G-P(sol) polarization free energy of solvation -29.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds