Wall clock time and date at job start Mon Mar 30 2020 02:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31106 * 1 3 3 Si 1.86805 * 119.99685 * 2 1 4 4 H 1.48495 * 109.47087 * 275.17636 * 3 2 1 5 5 H 1.48503 * 109.46925 * 35.17271 * 3 2 1 6 6 H 1.48494 * 109.47286 * 155.17265 * 3 2 1 7 7 C 1.39362 * 120.00638 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00080 * 336.69415 * 7 2 1 9 9 N 1.36497 * 120.00387 * 156.96775 * 7 2 1 10 10 C 1.37596 * 126.52011 * 140.18223 * 9 7 2 11 11 C 1.46715 * 125.21382 * 0.04622 * 10 9 7 12 12 O 1.21313 * 120.00169 * 185.20326 * 11 10 9 13 13 N 1.31464 * 109.57421 * 180.02562 * 10 9 7 14 14 C 1.34360 * 109.82120 * 0.02562 * 13 10 9 15 15 C 1.40184 * 133.17420 * 180.02562 * 14 13 10 16 16 C 1.38127 * 119.69627 * 179.97438 * 15 14 13 17 17 N 1.39755 * 119.77756 * 180.02562 * 16 15 14 18 18 C 1.39566 * 120.44058 * 359.97438 * 16 15 14 19 19 C 1.37714 * 120.46765 * 359.97438 * 18 16 15 20 20 C 1.37937 * 126.51895 * 319.87935 * 9 7 2 21 21 H 0.96998 * 120.00193 * 0.02562 * 1 2 3 22 22 H 1.08007 * 119.99723 * 5.19817 * 11 10 9 23 23 H 1.08000 * 120.15624 * 359.93032 * 15 14 13 24 24 H 0.96995 * 120.00415 * 359.97438 * 17 16 15 25 25 H 0.97000 * 119.99806 * 180.02562 * 17 16 15 26 26 H 1.08007 * 119.76446 * 180.02562 * 18 16 15 27 27 H 1.07999 * 120.01156 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3111 0.0000 0.0000 3 14 2.2450 1.6178 0.0000 4 1 2.3831 2.1097 -1.3943 5 1 1.5013 2.6187 0.8065 6 1 3.5929 1.4113 0.5878 7 6 2.0080 -1.2068 -0.0005 8 1 1.5342 -2.1042 0.3691 9 7 3.2914 -1.2537 -0.4630 10 6 4.3305 -1.9760 0.0770 11 6 4.2372 -2.8357 1.2623 12 8 5.2354 -3.3566 1.7139 13 7 5.4197 -1.7782 -0.6320 14 6 5.1566 -0.9373 -1.6464 15 6 5.9411 -0.4045 -2.6787 16 6 5.3717 0.4570 -3.5961 17 7 6.1521 0.9888 -4.6262 18 6 4.0219 0.7991 -3.5016 19 6 3.2394 0.2821 -2.4932 20 6 3.7918 -0.5905 -1.5641 21 1 -0.4850 0.8400 -0.0004 22 1 3.2798 -3.0046 1.7328 23 1 6.9862 -0.6657 -2.7561 24 1 7.0905 0.7530 -4.6951 25 1 5.7556 1.5944 -5.2719 26 1 3.5878 1.4734 -4.2251 27 1 2.1956 0.5515 -2.4273 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076080885.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:20 Heat of formation + Delta-G solvation = 24.237646 kcal Electronic energy + Delta-G solvation = -15586.635090 eV Core-core repulsion = 12923.596337 eV Total energy + Delta-G solvation = -2663.038753 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.075 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.88574 -39.77924 -38.64297 -36.15296 -34.40870 -33.89912 -30.63352 -29.39142 -27.29863 -26.03358 -23.06204 -22.77457 -21.08030 -20.03902 -18.76829 -18.05042 -17.30368 -17.01679 -16.46133 -16.20008 -16.13689 -15.11876 -14.98000 -14.86810 -14.77007 -14.42329 -13.79302 -13.43410 -13.13917 -12.82048 -12.27566 -12.17653 -11.85902 -11.08913 -10.91414 -10.70702 -10.58283 -9.04295 -9.00501 -8.20713 -6.60109 -0.35631 0.82778 1.00599 1.14607 1.24776 1.33763 1.97660 2.11431 2.32304 2.72035 2.97635 3.09901 3.29861 3.82266 4.23310 4.34577 4.50729 4.56288 4.60056 4.74259 5.14036 5.31555 5.38465 5.57820 5.75579 5.84429 5.95453 6.33205 6.49988 6.72846 7.05350 7.19987 7.25333 8.08032 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.019306 B = 0.014433 C = 0.009049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.984245 B = 1939.551451 C = 3093.370893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.220 1.220 5 H -0.264 1.264 6 H -0.291 1.291 7 C -0.371 4.371 8 H 0.123 0.877 9 N -0.262 5.262 10 C 0.072 3.928 11 C 0.441 3.559 12 O -0.484 6.484 13 N -0.509 5.509 14 C 0.062 3.938 15 C -0.194 4.194 16 C 0.216 3.784 17 N -0.862 5.862 18 C -0.169 4.169 19 C -0.065 4.065 20 C -0.060 4.060 21 H 0.301 0.699 22 H 0.160 0.840 23 H 0.127 0.873 24 H 0.406 0.594 25 H 0.409 0.591 26 H 0.159 0.841 27 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.959 5.668 -7.283 9.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.143 1.143 5 H -0.189 1.189 6 H -0.217 1.217 7 C -0.500 4.500 8 H 0.141 0.859 9 N 0.065 4.935 10 C -0.180 4.180 11 C 0.299 3.701 12 O -0.355 6.355 13 N -0.236 5.236 14 C -0.069 4.069 15 C -0.222 4.222 16 C 0.108 3.892 17 N -0.404 5.404 18 C -0.192 4.192 19 C -0.086 4.086 20 C -0.175 4.175 21 H 0.113 0.887 22 H 0.176 0.824 23 H 0.145 0.855 24 H 0.235 0.765 25 H 0.239 0.761 26 H 0.177 0.823 27 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.784 5.021 -6.646 9.148 hybrid contribution -0.566 0.979 -0.054 1.132 sum 3.217 5.999 -6.700 9.552 Atomic orbital electron populations 1.69614 1.07361 1.31570 1.36691 1.25834 0.95503 1.01017 0.92185 0.86465 0.78609 0.80145 0.81967 1.14274 1.18860 1.21679 1.19471 0.85381 0.99024 1.46107 0.85926 1.41314 1.07759 1.29144 1.15262 1.24631 0.83327 1.07434 1.02620 1.23400 0.94280 0.73572 0.78839 1.90467 1.42587 1.42162 1.60256 1.70072 1.25885 1.19711 1.07944 1.19000 0.91889 0.98839 0.97199 1.19438 0.99547 1.06073 0.97163 1.17227 0.90513 0.92362 0.89052 1.42158 1.12650 1.54745 1.30889 1.20666 0.92468 1.05383 1.00708 1.20098 0.99871 0.95194 0.93441 1.19417 0.96535 1.07177 0.94374 0.88729 0.82362 0.85474 0.76489 0.76059 0.82320 0.86142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.21 13.94 21.72 0.30 -38.91 15 2 C 0.07 3.38 4.91 85.07 0.42 3.79 15 3 Si 0.91 38.56 24.48 68.60 1.68 40.24 15 4 H -0.22 -8.45 5.50 99.48 0.55 -7.90 15 5 H -0.26 -10.50 7.11 99.48 0.71 -9.79 15 6 H -0.29 -14.16 7.11 99.48 0.71 -13.46 15 7 C -0.37 -18.18 9.83 84.24 0.83 -17.35 15 8 H 0.12 5.97 8.02 -2.91 -0.02 5.95 15 9 N -0.26 -12.95 2.43 -335.55 -0.82 -13.76 15 10 C 0.07 3.55 7.69 135.82 1.04 4.59 15 11 C 0.44 18.44 11.32 70.04 0.79 19.23 15 12 O -0.48 -22.21 17.89 -3.13 -0.06 -22.27 15 13 N -0.51 -26.26 11.20 -182.00 -2.04 -28.29 15 14 C 0.06 2.97 7.19 39.92 0.29 3.26 15 15 C -0.19 -7.55 9.94 22.72 0.23 -7.32 15 16 C 0.22 6.81 6.74 38.17 0.26 7.07 15 17 N -0.86 -17.64 9.09 -51.39 -0.47 -18.11 15 18 C -0.17 -5.53 9.87 22.47 0.22 -5.31 15 19 C -0.07 -2.68 6.83 22.31 0.15 -2.53 15 20 C -0.06 -2.84 5.29 39.04 0.21 -2.63 15 21 H 0.30 12.93 8.30 -92.71 -0.77 12.16 15 22 H 0.16 5.23 7.88 -2.91 -0.02 5.21 15 23 H 0.13 4.47 8.06 -2.91 -0.02 4.45 15 24 H 0.41 6.86 8.83 -92.71 -0.82 6.05 15 25 H 0.41 6.02 8.84 -92.71 -0.82 5.20 15 26 H 0.16 3.84 8.06 -2.91 -0.02 3.81 15 27 H 0.12 4.90 5.78 -2.91 -0.02 4.89 15 Total: -1.00 -64.21 242.12 2.48 -61.73 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -0.56 Total: 16.57 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 4.43 Total: 2.81 kcal Atomic # 7 Polarization: -96.06 SS G_CDS: -3.02 Total: -99.08 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.06 Total: -22.27 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 1.68 Total: 40.24 kcal Total: -64.21 2.48 -61.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076080885.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.968 kcal (2) G-P(sol) polarization free energy of solvation -64.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds