Wall clock time and date at job start Mon Mar 30 2020 02:55:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30743 * 1
3 3 Si 1.86799 * 119.99953 * 2 1
4 4 H 1.48497 * 109.46752 * 269.06456 * 3 2 1
5 5 H 1.48506 * 109.47066 * 29.06013 * 3 2 1
6 6 H 1.48491 * 109.47330 * 149.06351 * 3 2 1
7 7 C 1.40196 * 119.99884 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00149 * 346.76803 * 7 2 1
9 9 C 1.40241 * 119.99926 * 166.76893 * 7 2 1
10 10 C 1.39946 * 127.50053 * 339.72318 * 9 7 2
11 11 N 1.33004 * 105.95872 * 179.77748 * 10 9 7
12 12 N 1.28375 * 109.86653 * 0.22332 * 11 10 9
13 13 N 1.28659 * 111.37183 * 0.02562 * 12 11 10
14 14 C 1.39960 * 126.09537 * 179.97438 * 13 12 11
15 15 C 1.38970 * 120.04392 * 145.02738 * 14 13 12
16 16 C 1.38106 * 120.03542 * 179.97438 * 15 14 13
17 17 C 1.38230 * 120.13335 * 359.97438 * 16 15 14
18 18 C 1.38776 * 120.08554 * 359.97438 * 17 16 15
19 19 O 1.35902 * 120.01525 * 180.02562 * 18 17 16
20 20 C 1.38611 * 119.96442 * 359.79140 * 18 17 16
21 21 H 0.97005 * 120.00413 * 0.02562 * 1 2 3
22 22 H 1.08000 * 127.01853 * 0.03813 * 10 9 7
23 23 H 1.07998 * 119.98104 * 359.97438 * 15 14 13
24 24 H 1.08003 * 119.93563 * 179.97438 * 16 15 14
25 25 H 1.07992 * 119.95565 * 180.02562 * 17 16 15
26 26 H 0.96699 * 114.00161 * 90.00236 * 19 18 17
27 27 H 1.08000 * 120.06949 * 180.24751 * 20 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3074 0.0000 0.0000
3 14 2.2414 1.6177 0.0000
4 1 2.5087 2.0349 -1.3999
5 1 1.4290 2.6584 0.6801
6 1 3.5289 1.4460 0.7197
7 6 2.0084 -1.2142 0.0005
8 1 1.4899 -2.1370 0.2150
9 6 3.3829 -1.2304 -0.2774
10 6 4.1296 -0.2500 -0.9405
11 7 5.3818 -0.6977 -0.9640
12 7 5.4467 -1.8426 -0.3870
13 7 4.2928 -2.2183 0.0404
14 6 4.0115 -3.4132 0.7128
15 6 3.0443 -3.4392 1.7103
16 6 2.7665 -4.6184 2.3732
17 6 3.4486 -5.7754 2.0465
18 6 4.4147 -5.7557 1.0505
19 8 5.0841 -6.8942 0.7301
20 6 4.6932 -4.5753 0.3794
21 1 -0.4851 0.8401 -0.0004
22 1 3.7645 0.6820 -1.3461
23 1 2.5096 -2.5367 1.9672
24 1 2.0148 -4.6367 3.1485
25 1 3.2288 -6.6961 2.5665
26 1 4.6611 -7.4169 0.0352
27 1 5.4419 -4.5590 -0.3988
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000214217292.mol2 27
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:55:59
Heat of formation + Delta-G solvation = 51.098037 kcal
Electronic energy + Delta-G solvation = -15391.794362 eV
Core-core repulsion = 12729.920362 eV
Total energy + Delta-G solvation = -2661.873999 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 231.075 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-43.47923 -40.60555 -37.88378 -36.00216 -34.89976 -32.68643 -31.17613 -30.29065
-27.64623 -24.73766 -24.20316 -22.77894 -21.71628 -20.04451 -19.22475 -18.06900
-17.29952 -17.13719 -16.67853 -16.28848 -15.87124 -15.50031 -14.75966 -14.57247
-14.29819 -13.65038 -13.38981 -13.16337 -12.96665 -12.69940 -12.15541 -11.88371
-11.71272 -11.54020 -11.43602 -11.23919 -10.02005 -9.87192 -9.47810 -9.09384
-6.79211 -0.10485 0.20617 0.96656 1.28179 1.40366 1.49178 1.82666
1.85842 2.07520 2.56728 2.85621 3.25096 3.80220 3.96094 4.13779
4.14448 4.39449 4.45321 4.54275 4.79327 4.89057 5.00467 5.28284
5.33477 5.37495 5.54549 5.71089 5.86592 5.92680 6.35489 6.61370
6.81122 7.94112 8.06719
Molecular weight = 231.07amu
Principal moments of inertia in cm(-1)
A = 0.034172 B = 0.008912 C = 0.007404
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 819.195343 B = 3141.150921 C = 3780.849646
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.801 5.801
2 C 0.076 3.924
3 Si 0.955 3.045
4 H -0.251 1.251
5 H -0.262 1.262
6 H -0.268 1.268
7 C -0.432 4.432
8 H 0.093 0.907
9 C 0.165 3.835
10 C -0.229 4.229
11 N -0.264 5.264
12 N -0.200 5.200
13 N -0.323 5.323
14 C 0.149 3.851
15 C -0.144 4.144
16 C -0.073 4.073
17 C -0.141 4.141
18 C 0.126 3.874
19 O -0.500 6.500
20 C -0.163 4.163
21 H 0.308 0.692
22 H 0.174 0.826
23 H 0.130 0.870
24 H 0.170 0.830
25 H 0.170 0.830
26 H 0.413 0.587
27 H 0.120 0.880
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.430 -8.246 4.409 9.459
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.426 5.426
2 C -0.147 4.147
3 Si 0.779 3.221
4 H -0.176 1.176
5 H -0.187 1.187
6 H -0.192 1.192
7 C -0.468 4.468
8 H 0.111 0.889
9 C 0.045 3.955
10 C -0.391 4.391
11 N -0.129 5.129
12 N -0.174 5.174
13 N -0.112 5.112
14 C 0.057 3.943
15 C -0.164 4.164
16 C -0.091 4.091
17 C -0.160 4.160
18 C 0.081 3.919
19 O -0.313 6.313
20 C -0.184 4.184
21 H 0.120 0.880
22 H 0.191 0.809
23 H 0.148 0.852
24 H 0.188 0.812
25 H 0.188 0.812
26 H 0.273 0.727
27 H 0.138 0.862
Dipole moment (debyes) X Y Z Total
from point charges 0.281 -8.343 4.676 9.568
hybrid contribution -1.108 0.998 -0.681 1.639
sum -0.827 -7.345 3.995 8.402
Atomic orbital electron populations
1.69495 1.08397 1.32752 1.31966 1.26363 0.95373 1.02975 0.90019
0.85682 0.78864 0.77033 0.80530 1.17630 1.18696 1.19243 1.18539
0.88356 0.97074 1.42785 0.88944 1.20158 0.92405 0.87386 0.95598
1.23516 0.91177 1.05577 1.18811 1.73862 1.21133 1.04105 1.13799
1.77596 1.05802 1.11068 1.22928 1.44453 1.05832 1.16460 1.44489
1.17679 0.99221 0.82835 0.94597 1.21408 0.98620 1.01334 0.95085
1.21242 0.99125 0.90016 0.98761 1.21773 0.95112 1.00550 0.98524
1.18135 0.92821 0.85492 0.95466 1.84760 1.51932 1.33272 1.61371
1.21255 1.02699 0.91801 1.02689 0.88038 0.80890 0.85207 0.81238
0.81246 0.72736 0.86198
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.80 -37.55 13.92 21.87 0.30 -37.24 15
2 C 0.08 3.60 5.52 85.33 0.47 4.08 15
3 Si 0.96 39.33 24.54 68.60 1.68 41.01 15
4 H -0.25 -9.91 6.67 99.48 0.66 -9.25 15
5 H -0.26 -9.68 7.11 99.48 0.71 -8.97 15
6 H -0.27 -12.17 6.56 99.48 0.65 -11.52 15
7 C -0.43 -21.81 8.14 23.23 0.19 -21.62 15
8 H 0.09 4.77 6.80 -2.91 -0.02 4.75 15
9 C 0.17 8.62 6.19 39.07 0.24 8.86 15
10 C -0.23 -12.02 9.41 84.93 0.80 -11.22 15
11 N -0.26 -14.36 12.30 -55.80 -0.69 -15.05 15
12 N -0.20 -10.70 12.78 37.02 0.47 -10.23 15
13 N -0.32 -16.39 3.55 -179.87 -0.64 -17.03 15
14 C 0.15 6.38 6.33 38.15 0.24 6.62 15
15 C -0.14 -5.32 8.44 22.41 0.19 -5.13 15
16 C -0.07 -1.95 10.03 22.24 0.22 -1.72 15
17 C -0.14 -3.36 9.98 22.40 0.22 -3.14 15
18 C 0.13 3.61 6.70 22.49 0.15 3.76 15
19 O -0.50 -11.66 13.50 -92.44 -1.25 -12.90 15
20 C -0.16 -6.08 9.66 22.49 0.22 -5.87 15
21 H 0.31 12.75 8.29 -92.70 -0.77 11.98 15
22 H 0.17 8.39 4.35 -2.91 -0.01 8.37 15
23 H 0.13 5.23 6.33 -2.91 -0.02 5.21 15
24 H 0.17 3.23 8.06 -2.91 -0.02 3.21 15
25 H 0.17 2.71 8.06 -2.91 -0.02 2.68 15
26 H 0.41 5.25 9.06 -74.06 -0.67 4.58 15
27 H 0.12 4.71 8.03 -2.91 -0.02 4.68 15
Total: -1.00 -64.38 240.33 3.30 -61.09
By element:
Atomic # 1 Polarization: 15.27 SS G_CDS: 0.46 Total: 15.74 kcal
Atomic # 6 Polarization: -28.33 SS G_CDS: 2.95 Total: -25.38 kcal
Atomic # 7 Polarization: -79.00 SS G_CDS: -0.55 Total: -79.55 kcal
Atomic # 8 Polarization: -11.66 SS G_CDS: -1.25 Total: -12.90 kcal
Atomic # 14 Polarization: 39.33 SS G_CDS: 1.68 Total: 41.01 kcal
Total: -64.38 3.30 -61.09 kcal
The number of atoms in the molecule is 27
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000214217292.mol2 27
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 112.185 kcal
(2) G-P(sol) polarization free energy of solvation -64.384 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.801 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.297 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.087 kcal
(6) G-S(sol) free energy of system = (1) + (5) 51.098 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds