Wall clock time and date at job start Mon Mar 30 2020 02:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86799 * 119.99953 * 2 1 4 4 H 1.48497 * 109.46752 * 269.06456 * 3 2 1 5 5 H 1.48506 * 109.47066 * 29.06013 * 3 2 1 6 6 H 1.48491 * 109.47330 * 149.06351 * 3 2 1 7 7 C 1.40196 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00149 * 346.76803 * 7 2 1 9 9 C 1.40241 * 119.99926 * 166.76893 * 7 2 1 10 10 C 1.39946 * 127.50053 * 339.72318 * 9 7 2 11 11 N 1.33004 * 105.95872 * 179.77748 * 10 9 7 12 12 N 1.28375 * 109.86653 * 0.22332 * 11 10 9 13 13 N 1.28659 * 111.37183 * 0.02562 * 12 11 10 14 14 C 1.39960 * 126.09537 * 179.97438 * 13 12 11 15 15 C 1.38970 * 120.04392 * 145.02738 * 14 13 12 16 16 C 1.38106 * 120.03542 * 179.97438 * 15 14 13 17 17 C 1.38230 * 120.13335 * 359.97438 * 16 15 14 18 18 C 1.38776 * 120.08554 * 359.97438 * 17 16 15 19 19 O 1.35902 * 120.01525 * 180.02562 * 18 17 16 20 20 C 1.38611 * 119.96442 * 359.79140 * 18 17 16 21 21 H 0.97005 * 120.00413 * 0.02562 * 1 2 3 22 22 H 1.08000 * 127.01853 * 0.03813 * 10 9 7 23 23 H 1.07998 * 119.98104 * 359.97438 * 15 14 13 24 24 H 1.08003 * 119.93563 * 179.97438 * 16 15 14 25 25 H 1.07992 * 119.95565 * 180.02562 * 17 16 15 26 26 H 0.96699 * 114.00161 * 90.00236 * 19 18 17 27 27 H 1.08000 * 120.06949 * 180.24751 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.5087 2.0349 -1.3999 5 1 1.4290 2.6584 0.6801 6 1 3.5289 1.4460 0.7197 7 6 2.0084 -1.2142 0.0005 8 1 1.4899 -2.1370 0.2150 9 6 3.3829 -1.2304 -0.2774 10 6 4.1296 -0.2500 -0.9405 11 7 5.3818 -0.6977 -0.9640 12 7 5.4467 -1.8426 -0.3870 13 7 4.2928 -2.2183 0.0404 14 6 4.0115 -3.4132 0.7128 15 6 3.0443 -3.4392 1.7103 16 6 2.7665 -4.6184 2.3732 17 6 3.4486 -5.7754 2.0465 18 6 4.4147 -5.7557 1.0505 19 8 5.0841 -6.8942 0.7301 20 6 4.6932 -4.5753 0.3794 21 1 -0.4851 0.8401 -0.0004 22 1 3.7645 0.6820 -1.3461 23 1 2.5096 -2.5367 1.9672 24 1 2.0148 -4.6367 3.1485 25 1 3.2288 -6.6961 2.5665 26 1 4.6611 -7.4169 0.0352 27 1 5.4419 -4.5590 -0.3988 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214217292.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:59 Heat of formation + Delta-G solvation = 51.098037 kcal Electronic energy + Delta-G solvation = -15391.794362 eV Core-core repulsion = 12729.920362 eV Total energy + Delta-G solvation = -2661.873999 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.075 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.47923 -40.60555 -37.88378 -36.00216 -34.89976 -32.68643 -31.17613 -30.29065 -27.64623 -24.73766 -24.20316 -22.77894 -21.71628 -20.04451 -19.22475 -18.06900 -17.29952 -17.13719 -16.67853 -16.28848 -15.87124 -15.50031 -14.75966 -14.57247 -14.29819 -13.65038 -13.38981 -13.16337 -12.96665 -12.69940 -12.15541 -11.88371 -11.71272 -11.54020 -11.43602 -11.23919 -10.02005 -9.87192 -9.47810 -9.09384 -6.79211 -0.10485 0.20617 0.96656 1.28179 1.40366 1.49178 1.82666 1.85842 2.07520 2.56728 2.85621 3.25096 3.80220 3.96094 4.13779 4.14448 4.39449 4.45321 4.54275 4.79327 4.89057 5.00467 5.28284 5.33477 5.37495 5.54549 5.71089 5.86592 5.92680 6.35489 6.61370 6.81122 7.94112 8.06719 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.034172 B = 0.008912 C = 0.007404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.195343 B = 3141.150921 C = 3780.849646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.076 3.924 3 Si 0.955 3.045 4 H -0.251 1.251 5 H -0.262 1.262 6 H -0.268 1.268 7 C -0.432 4.432 8 H 0.093 0.907 9 C 0.165 3.835 10 C -0.229 4.229 11 N -0.264 5.264 12 N -0.200 5.200 13 N -0.323 5.323 14 C 0.149 3.851 15 C -0.144 4.144 16 C -0.073 4.073 17 C -0.141 4.141 18 C 0.126 3.874 19 O -0.500 6.500 20 C -0.163 4.163 21 H 0.308 0.692 22 H 0.174 0.826 23 H 0.130 0.870 24 H 0.170 0.830 25 H 0.170 0.830 26 H 0.413 0.587 27 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.430 -8.246 4.409 9.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.147 4.147 3 Si 0.779 3.221 4 H -0.176 1.176 5 H -0.187 1.187 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.111 0.889 9 C 0.045 3.955 10 C -0.391 4.391 11 N -0.129 5.129 12 N -0.174 5.174 13 N -0.112 5.112 14 C 0.057 3.943 15 C -0.164 4.164 16 C -0.091 4.091 17 C -0.160 4.160 18 C 0.081 3.919 19 O -0.313 6.313 20 C -0.184 4.184 21 H 0.120 0.880 22 H 0.191 0.809 23 H 0.148 0.852 24 H 0.188 0.812 25 H 0.188 0.812 26 H 0.273 0.727 27 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.281 -8.343 4.676 9.568 hybrid contribution -1.108 0.998 -0.681 1.639 sum -0.827 -7.345 3.995 8.402 Atomic orbital electron populations 1.69495 1.08397 1.32752 1.31966 1.26363 0.95373 1.02975 0.90019 0.85682 0.78864 0.77033 0.80530 1.17630 1.18696 1.19243 1.18539 0.88356 0.97074 1.42785 0.88944 1.20158 0.92405 0.87386 0.95598 1.23516 0.91177 1.05577 1.18811 1.73862 1.21133 1.04105 1.13799 1.77596 1.05802 1.11068 1.22928 1.44453 1.05832 1.16460 1.44489 1.17679 0.99221 0.82835 0.94597 1.21408 0.98620 1.01334 0.95085 1.21242 0.99125 0.90016 0.98761 1.21773 0.95112 1.00550 0.98524 1.18135 0.92821 0.85492 0.95466 1.84760 1.51932 1.33272 1.61371 1.21255 1.02699 0.91801 1.02689 0.88038 0.80890 0.85207 0.81238 0.81246 0.72736 0.86198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.55 13.92 21.87 0.30 -37.24 15 2 C 0.08 3.60 5.52 85.33 0.47 4.08 15 3 Si 0.96 39.33 24.54 68.60 1.68 41.01 15 4 H -0.25 -9.91 6.67 99.48 0.66 -9.25 15 5 H -0.26 -9.68 7.11 99.48 0.71 -8.97 15 6 H -0.27 -12.17 6.56 99.48 0.65 -11.52 15 7 C -0.43 -21.81 8.14 23.23 0.19 -21.62 15 8 H 0.09 4.77 6.80 -2.91 -0.02 4.75 15 9 C 0.17 8.62 6.19 39.07 0.24 8.86 15 10 C -0.23 -12.02 9.41 84.93 0.80 -11.22 15 11 N -0.26 -14.36 12.30 -55.80 -0.69 -15.05 15 12 N -0.20 -10.70 12.78 37.02 0.47 -10.23 15 13 N -0.32 -16.39 3.55 -179.87 -0.64 -17.03 15 14 C 0.15 6.38 6.33 38.15 0.24 6.62 15 15 C -0.14 -5.32 8.44 22.41 0.19 -5.13 15 16 C -0.07 -1.95 10.03 22.24 0.22 -1.72 15 17 C -0.14 -3.36 9.98 22.40 0.22 -3.14 15 18 C 0.13 3.61 6.70 22.49 0.15 3.76 15 19 O -0.50 -11.66 13.50 -92.44 -1.25 -12.90 15 20 C -0.16 -6.08 9.66 22.49 0.22 -5.87 15 21 H 0.31 12.75 8.29 -92.70 -0.77 11.98 15 22 H 0.17 8.39 4.35 -2.91 -0.01 8.37 15 23 H 0.13 5.23 6.33 -2.91 -0.02 5.21 15 24 H 0.17 3.23 8.06 -2.91 -0.02 3.21 15 25 H 0.17 2.71 8.06 -2.91 -0.02 2.68 15 26 H 0.41 5.25 9.06 -74.06 -0.67 4.58 15 27 H 0.12 4.71 8.03 -2.91 -0.02 4.68 15 Total: -1.00 -64.38 240.33 3.30 -61.09 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.46 Total: 15.74 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: 2.95 Total: -25.38 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -0.55 Total: -79.55 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -1.25 Total: -12.90 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 1.68 Total: 41.01 kcal Total: -64.38 3.30 -61.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214217292.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.185 kcal (2) G-P(sol) polarization free energy of solvation -64.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds