Wall clock time and date at job start Mon Mar 30 2020 02:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86800 * 120.00260 * 2 1 4 4 H 1.48497 * 109.47183 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46801 * 299.99788 * 3 2 1 6 6 H 1.48498 * 109.46888 * 59.99553 * 3 2 1 7 7 C 1.40047 * 119.99872 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00263 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00135 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99767 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00317 * 179.97438 * 9 7 2 12 12 C 1.46506 * 119.99949 * 180.02562 * 11 9 7 13 13 H 1.09000 * 109.47020 * 324.99485 * 12 11 9 14 14 C 1.52999 * 109.47075 * 84.99839 * 12 11 9 15 15 C 1.52997 * 109.47317 * 59.99940 * 14 12 11 16 16 C 1.53000 * 109.47060 * 59.99960 * 15 14 12 17 17 C 1.53002 * 109.47233 * 299.99657 * 16 15 14 18 18 C 1.52997 * 109.46817 * 60.00194 * 17 16 15 19 19 H 1.09002 * 109.47153 * 60.00231 * 18 17 16 20 20 Cl 1.80301 * 109.47004 * 180.02562 * 18 17 16 21 21 H 0.97003 * 120.00257 * 0.02562 * 1 2 3 22 22 H 0.97000 * 120.00195 * 359.97438 * 11 9 7 23 23 H 1.08996 * 109.46929 * 299.99044 * 14 12 11 24 24 H 1.09002 * 109.46716 * 179.97438 * 14 12 11 25 25 H 1.09002 * 109.47153 * 299.99641 * 15 14 12 26 26 H 1.09001 * 109.46832 * 179.97438 * 15 14 12 27 27 H 1.08992 * 109.47399 * 59.99823 * 16 15 14 28 28 H 1.09004 * 109.46724 * 180.02562 * 16 15 14 29 29 H 1.08993 * 109.47662 * 180.02562 * 17 16 15 30 30 H 1.09002 * 109.47075 * 300.00932 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7007 1.3463 0.0006 5 1 1.8820 2.3963 -1.2125 6 1 1.8819 2.3964 1.2124 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2750 -2.4805 0.0005 10 8 0.0581 -2.4805 0.0005 11 7 1.9489 -3.6477 0.0005 12 6 1.2162 -4.9165 0.0000 13 1 0.3054 -4.8103 0.5892 14 6 0.8529 -5.2949 -1.4372 15 6 2.1314 -5.4439 -2.2642 16 6 3.0084 -6.5395 -1.6546 17 6 3.3719 -6.1610 -0.2173 18 6 2.0933 -6.0120 0.6096 19 1 1.5483 -6.9560 0.6093 20 17 2.5216 -5.5653 2.3031 21 1 -0.4851 0.8401 -0.0004 22 1 2.9188 -3.6478 0.0002 23 1 0.2280 -4.5145 -1.8715 24 1 0.3082 -6.2391 -1.4376 25 1 2.6765 -4.5000 -2.2639 26 1 1.8725 -5.7140 -3.2880 27 1 2.4634 -7.4834 -1.6549 28 1 3.9195 -6.6453 -2.2435 29 1 3.9969 -6.9412 0.2169 30 1 3.9168 -5.2170 -0.2170 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238556431.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:23 Heat of formation + Delta-G solvation = -74.005546 kcal Electronic energy + Delta-G solvation = -14709.447889 eV Core-core repulsion = 12143.256485 eV Total energy + Delta-G solvation = -2566.191404 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 231.077 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.01100 -36.36489 -35.25504 -32.73723 -31.96170 -30.29070 -29.05241 -25.97871 -22.41094 -22.11236 -20.54261 -18.25695 -17.39561 -15.61739 -15.20802 -14.83544 -14.44039 -14.16427 -13.67594 -12.94420 -12.57867 -12.41226 -12.22522 -11.93057 -11.73167 -11.24505 -11.08498 -10.99951 -10.44161 -10.42706 -10.37365 -10.33587 -10.11432 -9.89305 -9.63042 -8.82523 -7.56681 -7.46143 -6.14888 -4.59355 2.56405 3.14997 3.23351 3.27680 4.13207 4.62302 4.67442 4.79744 4.95222 5.08376 5.26061 5.42177 5.44704 5.62913 5.78368 5.86073 5.89500 6.05104 6.14310 6.19934 6.38244 6.56495 6.65519 6.74696 7.47313 7.97075 8.13577 8.37313 9.07011 9.58038 10.64291 10.83770 Molecular weight = 231.08amu Principal moments of inertia in cm(-1) A = 0.031434 B = 0.008174 C = 0.007575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.553249 B = 3424.586644 C = 3695.453858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.905 3.095 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.066 0.934 9 C 0.559 3.441 10 O -0.581 6.581 11 N -0.752 5.752 12 C 0.154 3.846 13 H 0.084 0.916 14 C -0.127 4.127 15 C -0.120 4.120 16 C -0.115 4.115 17 C -0.122 4.122 18 C -0.004 4.004 19 H 0.098 0.902 20 Cl -0.184 7.184 21 H 0.266 0.734 22 H 0.379 0.621 23 H 0.077 0.923 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.399 -11.275 -2.052 13.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.581 4.581 8 H 0.084 0.916 9 C 0.363 3.637 10 O -0.463 6.463 11 N -0.408 5.408 12 C 0.047 3.953 13 H 0.103 0.897 14 C -0.166 4.166 15 C -0.158 4.158 16 C -0.152 4.152 17 C -0.160 4.160 18 C -0.048 4.048 19 H 0.116 0.884 20 Cl -0.157 7.157 21 H 0.077 0.923 22 H 0.212 0.788 23 H 0.096 0.904 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.349 -11.125 -1.909 12.491 hybrid contribution 0.928 0.783 0.119 1.220 sum 6.277 -10.342 -1.790 12.229 Atomic orbital electron populations 1.70030 1.06986 1.27003 1.35688 1.25685 0.94583 1.00192 0.92673 0.86363 0.80546 0.81978 0.78142 1.18816 1.20252 1.20224 1.20897 0.93535 0.89431 1.54192 0.91564 1.18157 0.87159 0.82355 0.76011 1.90593 1.14081 1.86766 1.54902 1.46131 1.08311 1.04125 1.82234 1.20673 0.95290 0.84429 0.94920 0.89750 1.21939 0.97469 1.01204 0.96011 1.21521 0.96715 0.99187 0.98331 1.21537 0.99940 0.98879 0.94881 1.21861 0.96111 1.02940 0.95117 1.24482 0.98268 1.00290 0.81760 0.88352 1.98716 1.94624 1.94658 1.27691 0.92278 0.78797 0.90388 0.92518 0.90949 0.92431 0.92134 0.91634 0.91252 0.90471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.11 11.83 55.55 0.66 -22.45 16 2 C 0.09 2.47 5.50 -17.37 -0.10 2.38 16 3 Si 0.90 20.35 29.56 -169.99 -5.02 15.32 16 4 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 7 C -0.54 -15.34 9.54 -35.63 -0.34 -15.68 16 8 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 9 C 0.56 15.62 7.71 -12.99 -0.10 15.52 16 10 O -0.58 -18.48 14.68 5.20 0.08 -18.40 16 11 N -0.75 -16.27 3.86 -55.21 -0.21 -16.48 16 12 C 0.15 2.83 2.30 -67.93 -0.16 2.68 16 13 H 0.08 1.82 7.58 -51.93 -0.39 1.42 16 14 C -0.13 -2.09 5.60 -26.73 -0.15 -2.24 16 15 C -0.12 -1.67 5.77 -26.73 -0.15 -1.83 16 16 C -0.11 -1.29 5.92 -26.73 -0.16 -1.45 16 17 C -0.12 -1.51 5.16 -26.73 -0.14 -1.64 16 18 C 0.00 -0.05 2.98 -26.73 -0.08 -0.13 16 19 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 20 Cl -0.18 -3.01 28.28 -51.86 -1.47 -4.47 16 21 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 22 H 0.38 7.50 6.85 -40.82 -0.28 7.22 16 23 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.07 1.15 7.60 -51.93 -0.39 0.75 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.03 6.50 -51.93 -0.34 0.69 16 LS Contribution 261.67 15.07 3.94 3.94 Total: -1.00 -32.70 261.67 -7.31 -40.01 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -3.91 Total: 4.93 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -1.37 Total: -2.40 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.44 Total: -38.93 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: 0.08 Total: -18.40 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 17 Polarization: -3.01 SS G_CDS: -1.47 Total: -4.47 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -32.70 -7.31 -40.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238556431.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.992 kcal (2) G-P(sol) polarization free energy of solvation -32.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds