Wall clock time and date at job start Mon Mar 30 2020 02:56:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30670 * 1
3 3 Si 1.86800 * 120.00260 * 2 1
4 4 H 1.48497 * 109.47183 * 179.97438 * 3 2 1
5 5 H 1.48499 * 109.46801 * 299.99788 * 3 2 1
6 6 H 1.48498 * 109.46888 * 59.99553 * 3 2 1
7 7 C 1.40047 * 119.99872 * 179.97438 * 2 1 3
8 8 H 1.07998 * 120.00263 * 179.97438 * 7 2 1
9 9 C 1.46376 * 120.00135 * 0.02562 * 7 2 1
10 10 O 1.21693 * 119.99767 * 359.97438 * 9 7 2
11 11 N 1.34777 * 120.00317 * 179.97438 * 9 7 2
12 12 C 1.46506 * 119.99949 * 180.02562 * 11 9 7
13 13 H 1.09000 * 109.47020 * 324.99485 * 12 11 9
14 14 C 1.52999 * 109.47075 * 84.99839 * 12 11 9
15 15 C 1.52997 * 109.47317 * 59.99940 * 14 12 11
16 16 C 1.53000 * 109.47060 * 59.99960 * 15 14 12
17 17 C 1.53002 * 109.47233 * 299.99657 * 16 15 14
18 18 C 1.52997 * 109.46817 * 60.00194 * 17 16 15
19 19 H 1.09002 * 109.47153 * 60.00231 * 18 17 16
20 20 Cl 1.80301 * 109.47004 * 180.02562 * 18 17 16
21 21 H 0.97003 * 120.00257 * 0.02562 * 1 2 3
22 22 H 0.97000 * 120.00195 * 359.97438 * 11 9 7
23 23 H 1.08996 * 109.46929 * 299.99044 * 14 12 11
24 24 H 1.09002 * 109.46716 * 179.97438 * 14 12 11
25 25 H 1.09002 * 109.47153 * 299.99641 * 15 14 12
26 26 H 1.09001 * 109.46832 * 179.97438 * 15 14 12
27 27 H 1.08992 * 109.47399 * 59.99823 * 16 15 14
28 28 H 1.09004 * 109.46724 * 180.02562 * 16 15 14
29 29 H 1.08993 * 109.47662 * 180.02562 * 17 16 15
30 30 H 1.09002 * 109.47075 * 300.00932 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3067 0.0000 0.0000
3 14 2.2408 1.6177 0.0000
4 1 3.7007 1.3463 0.0006
5 1 1.8820 2.3963 -1.2125
6 1 1.8819 2.3964 1.2124
7 6 2.0069 -1.2129 0.0005
8 1 3.0869 -1.2129 0.0001
9 6 1.2750 -2.4805 0.0005
10 8 0.0581 -2.4805 0.0005
11 7 1.9489 -3.6477 0.0005
12 6 1.2162 -4.9165 0.0000
13 1 0.3054 -4.8103 0.5892
14 6 0.8529 -5.2949 -1.4372
15 6 2.1314 -5.4439 -2.2642
16 6 3.0084 -6.5395 -1.6546
17 6 3.3719 -6.1610 -0.2173
18 6 2.0933 -6.0120 0.6096
19 1 1.5483 -6.9560 0.6093
20 17 2.5216 -5.5653 2.3031
21 1 -0.4851 0.8401 -0.0004
22 1 2.9188 -3.6478 0.0002
23 1 0.2280 -4.5145 -1.8715
24 1 0.3082 -6.2391 -1.4376
25 1 2.6765 -4.5000 -2.2639
26 1 1.8725 -5.7140 -3.2880
27 1 2.4634 -7.4834 -1.6549
28 1 3.9195 -6.6453 -2.2435
29 1 3.9969 -6.9412 0.2169
30 1 3.9168 -5.2170 -0.2170
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000238556431.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:56:23
Heat of formation + Delta-G solvation = -74.005546 kcal
Electronic energy + Delta-G solvation = -14709.447889 eV
Core-core repulsion = 12143.256485 eV
Total energy + Delta-G solvation = -2566.191404 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 231.077 amu
Computer time = 0.15 seconds
Orbital eigenvalues (eV)
-39.01100 -36.36489 -35.25504 -32.73723 -31.96170 -30.29070 -29.05241 -25.97871
-22.41094 -22.11236 -20.54261 -18.25695 -17.39561 -15.61739 -15.20802 -14.83544
-14.44039 -14.16427 -13.67594 -12.94420 -12.57867 -12.41226 -12.22522 -11.93057
-11.73167 -11.24505 -11.08498 -10.99951 -10.44161 -10.42706 -10.37365 -10.33587
-10.11432 -9.89305 -9.63042 -8.82523 -7.56681 -7.46143 -6.14888 -4.59355
2.56405 3.14997 3.23351 3.27680 4.13207 4.62302 4.67442 4.79744
4.95222 5.08376 5.26061 5.42177 5.44704 5.62913 5.78368 5.86073
5.89500 6.05104 6.14310 6.19934 6.38244 6.56495 6.65519 6.74696
7.47313 7.97075 8.13577 8.37313 9.07011 9.58038 10.64291 10.83770
Molecular weight = 231.08amu
Principal moments of inertia in cm(-1)
A = 0.031434 B = 0.008174 C = 0.007575
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 890.553249 B = 3424.586644 C = 3695.453858
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.768 5.768
2 C 0.088 3.912
3 Si 0.905 3.095
4 H -0.264 1.264
5 H -0.277 1.277
6 H -0.277 1.277
7 C -0.543 4.543
8 H 0.066 0.934
9 C 0.559 3.441
10 O -0.581 6.581
11 N -0.752 5.752
12 C 0.154 3.846
13 H 0.084 0.916
14 C -0.127 4.127
15 C -0.120 4.120
16 C -0.115 4.115
17 C -0.122 4.122
18 C -0.004 4.004
19 H 0.098 0.902
20 Cl -0.184 7.184
21 H 0.266 0.734
22 H 0.379 0.621
23 H 0.077 0.923
24 H 0.056 0.944
25 H 0.072 0.928
26 H 0.057 0.943
27 H 0.060 0.940
28 H 0.065 0.935
29 H 0.069 0.931
30 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.399 -11.275 -2.052 13.126
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.397 5.397
2 C -0.131 4.131
3 Si 0.730 3.270
4 H -0.188 1.188
5 H -0.203 1.203
6 H -0.202 1.202
7 C -0.581 4.581
8 H 0.084 0.916
9 C 0.363 3.637
10 O -0.463 6.463
11 N -0.408 5.408
12 C 0.047 3.953
13 H 0.103 0.897
14 C -0.166 4.166
15 C -0.158 4.158
16 C -0.152 4.152
17 C -0.160 4.160
18 C -0.048 4.048
19 H 0.116 0.884
20 Cl -0.157 7.157
21 H 0.077 0.923
22 H 0.212 0.788
23 H 0.096 0.904
24 H 0.075 0.925
25 H 0.091 0.909
26 H 0.076 0.924
27 H 0.079 0.921
28 H 0.084 0.916
29 H 0.087 0.913
30 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 5.349 -11.125 -1.909 12.491
hybrid contribution 0.928 0.783 0.119 1.220
sum 6.277 -10.342 -1.790 12.229
Atomic orbital electron populations
1.70030 1.06986 1.27003 1.35688 1.25685 0.94583 1.00192 0.92673
0.86363 0.80546 0.81978 0.78142 1.18816 1.20252 1.20224 1.20897
0.93535 0.89431 1.54192 0.91564 1.18157 0.87159 0.82355 0.76011
1.90593 1.14081 1.86766 1.54902 1.46131 1.08311 1.04125 1.82234
1.20673 0.95290 0.84429 0.94920 0.89750 1.21939 0.97469 1.01204
0.96011 1.21521 0.96715 0.99187 0.98331 1.21537 0.99940 0.98879
0.94881 1.21861 0.96111 1.02940 0.95117 1.24482 0.98268 1.00290
0.81760 0.88352 1.98716 1.94624 1.94658 1.27691 0.92278 0.78797
0.90388 0.92518 0.90949 0.92431 0.92134 0.91634 0.91252 0.90471
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.77 -23.11 11.83 55.55 0.66 -22.45 16
2 C 0.09 2.47 5.50 -17.37 -0.10 2.38 16
3 Si 0.90 20.35 29.56 -169.99 -5.02 15.32 16
4 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16
5 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16
6 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16
7 C -0.54 -15.34 9.54 -35.63 -0.34 -15.68 16
8 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16
9 C 0.56 15.62 7.71 -12.99 -0.10 15.52 16
10 O -0.58 -18.48 14.68 5.20 0.08 -18.40 16
11 N -0.75 -16.27 3.86 -55.21 -0.21 -16.48 16
12 C 0.15 2.83 2.30 -67.93 -0.16 2.68 16
13 H 0.08 1.82 7.58 -51.93 -0.39 1.42 16
14 C -0.13 -2.09 5.60 -26.73 -0.15 -2.24 16
15 C -0.12 -1.67 5.77 -26.73 -0.15 -1.83 16
16 C -0.11 -1.29 5.92 -26.73 -0.16 -1.45 16
17 C -0.12 -1.51 5.16 -26.73 -0.14 -1.64 16
18 C 0.00 -0.05 2.98 -26.73 -0.08 -0.13 16
19 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16
20 Cl -0.18 -3.01 28.28 -51.86 -1.47 -4.47 16
21 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16
22 H 0.38 7.50 6.85 -40.82 -0.28 7.22 16
23 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16
24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
25 H 0.07 1.15 7.60 -51.93 -0.39 0.75 16
26 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16
27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16
28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
30 H 0.08 1.03 6.50 -51.93 -0.34 0.69 16
LS Contribution 261.67 15.07 3.94 3.94
Total: -1.00 -32.70 261.67 -7.31 -40.01
By element:
Atomic # 1 Polarization: 8.84 SS G_CDS: -3.91 Total: 4.93 kcal
Atomic # 6 Polarization: -1.03 SS G_CDS: -1.37 Total: -2.40 kcal
Atomic # 7 Polarization: -39.38 SS G_CDS: 0.44 Total: -38.93 kcal
Atomic # 8 Polarization: -18.48 SS G_CDS: 0.08 Total: -18.40 kcal
Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal
Atomic # 17 Polarization: -3.01 SS G_CDS: -1.47 Total: -4.47 kcal
Total LS contribution 3.94 Total: 3.94 kcal
Total: -32.70 -7.31 -40.01 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000238556431.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -33.992 kcal
(2) G-P(sol) polarization free energy of solvation -32.704 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.696 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.014 kcal
(6) G-S(sol) free energy of system = (1) + (5) -74.006 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.15 seconds