Wall clock time and date at job start Mon Mar 30 2020 02:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86800 * 120.00260 * 2 1 4 4 H 1.48497 * 109.47183 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46801 * 299.99788 * 3 2 1 6 6 H 1.48498 * 109.46888 * 59.99553 * 3 2 1 7 7 C 1.40047 * 119.99872 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00263 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00135 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99767 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00317 * 179.97438 * 9 7 2 12 12 C 1.46506 * 119.99949 * 180.02562 * 11 9 7 13 13 H 1.09000 * 109.47020 * 324.99485 * 12 11 9 14 14 C 1.52999 * 109.47075 * 84.99839 * 12 11 9 15 15 C 1.52997 * 109.47317 * 59.99940 * 14 12 11 16 16 C 1.53000 * 109.47060 * 59.99960 * 15 14 12 17 17 C 1.53002 * 109.47233 * 299.99657 * 16 15 14 18 18 C 1.52997 * 109.46817 * 60.00194 * 17 16 15 19 19 H 1.09002 * 109.47153 * 60.00231 * 18 17 16 20 20 Cl 1.80301 * 109.47004 * 180.02562 * 18 17 16 21 21 H 0.97003 * 120.00257 * 0.02562 * 1 2 3 22 22 H 0.97000 * 120.00195 * 359.97438 * 11 9 7 23 23 H 1.08996 * 109.46929 * 299.99044 * 14 12 11 24 24 H 1.09002 * 109.46716 * 179.97438 * 14 12 11 25 25 H 1.09002 * 109.47153 * 299.99641 * 15 14 12 26 26 H 1.09001 * 109.46832 * 179.97438 * 15 14 12 27 27 H 1.08992 * 109.47399 * 59.99823 * 16 15 14 28 28 H 1.09004 * 109.46724 * 180.02562 * 16 15 14 29 29 H 1.08993 * 109.47662 * 180.02562 * 17 16 15 30 30 H 1.09002 * 109.47075 * 300.00932 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7007 1.3463 0.0006 5 1 1.8820 2.3963 -1.2125 6 1 1.8819 2.3964 1.2124 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2750 -2.4805 0.0005 10 8 0.0581 -2.4805 0.0005 11 7 1.9489 -3.6477 0.0005 12 6 1.2162 -4.9165 0.0000 13 1 0.3054 -4.8103 0.5892 14 6 0.8529 -5.2949 -1.4372 15 6 2.1314 -5.4439 -2.2642 16 6 3.0084 -6.5395 -1.6546 17 6 3.3719 -6.1610 -0.2173 18 6 2.0933 -6.0120 0.6096 19 1 1.5483 -6.9560 0.6093 20 17 2.5216 -5.5653 2.3031 21 1 -0.4851 0.8401 -0.0004 22 1 2.9188 -3.6478 0.0002 23 1 0.2280 -4.5145 -1.8715 24 1 0.3082 -6.2391 -1.4376 25 1 2.6765 -4.5000 -2.2639 26 1 1.8725 -5.7140 -3.2880 27 1 2.4634 -7.4834 -1.6549 28 1 3.9195 -6.6453 -2.2435 29 1 3.9969 -6.9412 0.2169 30 1 3.9168 -5.2170 -0.2170 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238556431.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:23 Heat of formation + Delta-G solvation = -96.136230 kcal Electronic energy + Delta-G solvation = -14710.407547 eV Core-core repulsion = 12143.256485 eV Total energy + Delta-G solvation = -2567.151062 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 231.077 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.50443 -38.26171 -36.52186 -34.72967 -33.84176 -31.47746 -30.60141 -28.04393 -23.68052 -23.34097 -22.29590 -19.76542 -19.35306 -17.52318 -16.71237 -16.38126 -15.98986 -15.56604 -15.10029 -14.55781 -14.28649 -13.79401 -13.69582 -13.50235 -13.11666 -12.91123 -12.79783 -12.59650 -12.35332 -11.99181 -11.71282 -11.56761 -11.43308 -11.15769 -10.93539 -10.88797 -9.80200 -9.38466 -8.26792 -6.81896 1.34398 1.38837 1.39438 1.56632 2.24790 2.51046 3.12061 3.53585 3.64932 3.75424 4.03052 4.13187 4.21979 4.32730 4.51014 4.61302 4.73004 4.92464 5.05378 5.14269 5.18060 5.28788 5.33656 5.40262 5.52641 5.91772 6.26675 6.33716 6.89872 7.59283 8.54226 8.71989 Molecular weight = 231.08amu Principal moments of inertia in cm(-1) A = 0.031434 B = 0.008174 C = 0.007575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.553249 B = 3424.586644 C = 3695.453858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.029 3.971 3 Si 0.993 3.007 4 H -0.248 1.248 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.573 4.573 8 H 0.082 0.918 9 C 0.546 3.454 10 O -0.631 6.631 11 N -0.737 5.737 12 C 0.149 3.851 13 H 0.044 0.956 14 C -0.122 4.122 15 C -0.116 4.116 16 C -0.105 4.105 17 C -0.119 4.119 18 C 0.006 3.994 19 H 0.129 0.871 20 Cl -0.202 7.202 21 H 0.273 0.727 22 H 0.390 0.610 23 H 0.030 0.970 24 H 0.088 0.912 25 H 0.046 0.954 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.663 -12.380 -2.618 15.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.185 4.185 3 Si 0.813 3.187 4 H -0.171 1.171 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.610 4.610 8 H 0.100 0.900 9 C 0.349 3.651 10 O -0.518 6.518 11 N -0.392 5.392 12 C 0.043 3.957 13 H 0.062 0.938 14 C -0.161 4.161 15 C -0.154 4.154 16 C -0.142 4.142 17 C -0.157 4.157 18 C -0.038 4.038 19 H 0.147 0.853 20 Cl -0.176 7.176 21 H 0.082 0.918 22 H 0.225 0.775 23 H 0.049 0.951 24 H 0.106 0.894 25 H 0.065 0.935 26 H 0.093 0.907 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.116 0.884 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.657 -12.284 -2.478 14.686 hybrid contribution 0.181 1.044 0.281 1.097 sum 7.839 -11.239 -2.196 13.878 Atomic orbital electron populations 1.70196 1.09396 1.28637 1.36928 1.26911 0.95494 1.04788 0.91344 0.85036 0.79405 0.75778 0.78470 1.17101 1.19280 1.19550 1.21426 0.94499 0.90356 1.54690 0.89974 1.18452 0.86727 0.84232 0.75643 1.90548 1.16182 1.87908 1.57157 1.45737 1.08732 1.04059 1.80624 1.20817 0.94404 0.84319 0.96207 0.93766 1.21859 0.98688 1.00992 0.94600 1.21496 0.95409 0.99405 0.99094 1.21513 1.00546 0.98368 0.93780 1.21900 0.94814 1.03327 0.95630 1.24581 0.99226 0.99327 0.80632 0.85270 1.98721 1.94656 1.94874 1.29320 0.91756 0.77518 0.95095 0.89363 0.93494 0.90720 0.89701 0.89267 0.88447 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.15 11.83 21.83 0.26 -50.89 16 2 C 0.03 1.67 5.50 85.30 0.47 2.14 16 3 Si 0.99 41.92 29.56 68.60 2.03 43.95 16 4 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.57 -33.00 9.54 24.83 0.24 -32.77 16 8 H 0.08 4.30 7.85 -2.91 -0.02 4.28 16 9 C 0.55 31.75 7.71 86.36 0.67 32.41 16 10 O -0.63 -42.45 14.68 -4.33 -0.06 -42.52 16 11 N -0.74 -32.67 3.86 -446.80 -1.73 -34.40 16 12 C 0.15 5.54 2.30 44.99 0.10 5.65 16 13 H 0.04 2.00 7.58 -2.39 -0.02 1.98 16 14 C -0.12 -4.01 5.60 30.59 0.17 -3.83 16 15 C -0.12 -3.03 5.77 30.59 0.18 -2.85 16 16 C -0.10 -1.91 5.92 30.60 0.18 -1.73 16 17 C -0.12 -2.52 5.16 30.59 0.16 -2.36 16 18 C 0.01 0.17 2.98 30.60 0.09 0.26 16 19 H 0.13 2.75 8.14 -2.39 -0.02 2.73 16 20 Cl -0.20 -6.43 28.28 -2.72 -0.08 -6.50 16 21 H 0.27 15.37 8.29 -92.71 -0.77 14.60 16 22 H 0.39 15.52 6.85 -92.71 -0.63 14.89 16 23 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.05 1.45 7.60 -2.39 -0.02 1.44 16 26 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.06 1.54 6.50 -2.39 -0.02 1.53 16 Total: -1.00 -75.32 261.67 3.18 -72.14 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.51 Total: 21.32 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: 2.25 Total: -3.10 kcal Atomic # 7 Polarization: -83.82 SS G_CDS: -1.47 Total: -85.29 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -0.06 Total: -42.52 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Atomic # 17 Polarization: -6.43 SS G_CDS: -0.08 Total: -6.50 kcal Total: -75.32 3.18 -72.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238556431.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.996 kcal (2) G-P(sol) polarization free energy of solvation -75.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds