Wall clock time and date at job start Mon Mar 30 2020 03:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34782 * 126.37971 * 2 1 4 4 N 1.33924 * 107.83236 * 179.97438 * 3 2 1 5 5 C 1.31192 * 108.67098 * 0.02562 * 4 3 2 6 6 C 1.47857 * 125.71483 * 179.97438 * 5 4 3 7 7 C 1.40343 * 120.49377 * 0.02803 * 6 5 4 8 8 C 1.38844 * 118.54735 * 180.02562 * 7 6 5 9 9 N 1.31964 * 119.35470 * 359.97438 * 8 7 6 10 10 C 1.33474 * 120.96840 * 0.02562 * 9 8 7 11 11 C 1.41621 * 119.21320 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99981 * 179.97438 * 11 10 9 13 13 C 1.40039 * 119.99654 * 359.97438 * 11 10 9 14 14 N 1.30698 * 120.00454 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99717 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46864 * 60.00445 * 15 13 11 17 17 H 1.48496 * 109.46943 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47513 * 300.00331 * 15 13 11 19 19 N 1.32870 * 120.49720 * 179.74312 * 6 5 4 20 20 O 1.34448 * 108.57157 * 359.97438 * 5 4 3 21 21 H 1.08992 * 109.47458 * 89.99631 * 1 2 3 22 22 H 1.09002 * 109.47258 * 209.99866 * 1 2 3 23 23 H 1.09003 * 109.46953 * 329.99456 * 1 2 3 24 24 H 1.08003 * 126.08679 * 0.02562 * 3 2 1 25 25 H 1.07999 * 120.73042 * 359.97201 * 7 6 5 26 26 H 1.07995 * 120.32148 * 179.97438 * 8 7 6 27 27 H 0.96998 * 120.00231 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3064 1.0851 0.0000 4 7 3.5761 0.6591 0.0006 5 6 3.5789 -0.6528 0.0004 6 6 4.7813 -1.5133 0.0003 7 6 6.0642 -0.9444 0.0010 8 6 7.1652 -1.7903 0.0004 9 7 6.9774 -3.0965 -0.0004 10 6 5.7468 -3.6135 -0.0011 11 6 5.5882 -5.0208 -0.0024 12 1 4.5984 -5.4527 -0.0026 13 6 6.7151 -5.8523 -0.0036 14 7 7.9130 -5.3296 -0.0029 15 14 6.5059 -7.7086 -0.0047 16 1 5.7543 -8.1212 -1.2171 17 1 7.8418 -8.3571 -0.0065 18 1 5.7555 -8.1229 1.2079 19 7 4.6633 -2.8368 0.0052 20 8 2.3054 -1.0837 0.0002 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 1.9810 2.1150 0.0004 25 1 6.1924 0.1280 0.0012 26 1 8.1655 -1.3833 0.0005 27 1 8.6934 -5.9056 -0.0033 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259849541.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:09 Heat of formation + Delta-G solvation = 68.472387 kcal Electronic energy + Delta-G solvation = -14936.143008 eV Core-core repulsion = 12275.022417 eV Total energy + Delta-G solvation = -2661.120591 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.88123 -38.94914 -34.43435 -33.95295 -32.74619 -31.68967 -30.52248 -26.92411 -26.22044 -23.47715 -22.33094 -21.30728 -20.73229 -18.12901 -16.54067 -16.35615 -16.05935 -14.91588 -14.67579 -14.01723 -13.86588 -13.39842 -13.31305 -12.89467 -12.89131 -12.35490 -12.22265 -11.45933 -11.32311 -11.03073 -10.77719 -10.41200 -10.21140 -9.76805 -9.38797 -9.20760 -8.50979 -7.79828 -7.55620 -6.63684 -4.81997 1.37919 2.46805 2.58444 2.99004 3.02464 3.05507 3.08700 3.45605 3.83214 4.27548 4.58514 4.92135 5.16069 5.34230 5.39405 5.59854 5.77406 5.82475 6.01750 6.14780 6.32710 6.42266 6.57193 6.59517 6.97282 7.07702 7.47030 8.03665 8.12449 8.32222 8.47665 8.89619 9.98565 10.15058 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.039740 B = 0.006517 C = 0.005616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.412600 B = 4295.325992 C = 4984.593692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.064 4.064 3 C -0.044 4.044 4 N -0.471 5.471 5 C 0.264 3.736 6 C 0.245 3.755 7 C -0.320 4.320 8 C 0.158 3.842 9 N -0.496 5.496 10 C 0.392 3.608 11 C -0.395 4.395 12 H 0.095 0.905 13 C 0.065 3.935 14 N -0.709 5.709 15 Si 0.922 3.078 16 H -0.262 1.262 17 H -0.275 1.275 18 H -0.262 1.262 19 N -0.570 5.570 20 O -0.177 6.177 21 H 0.081 0.919 22 H 0.077 0.923 23 H 0.088 0.912 24 H 0.182 0.818 25 H 0.121 0.879 26 H 0.141 0.859 27 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.532 5.697 -0.003 9.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.119 4.119 3 C -0.185 4.185 4 N -0.201 5.201 5 C 0.060 3.940 6 C 0.094 3.906 7 C -0.349 4.349 8 C -0.016 4.016 9 N -0.214 5.214 10 C 0.155 3.845 11 C -0.430 4.430 12 H 0.113 0.887 13 C -0.162 4.162 14 N -0.331 5.331 15 Si 0.745 3.255 16 H -0.187 1.187 17 H -0.200 1.200 18 H -0.187 1.187 19 N -0.292 5.292 20 O -0.062 6.062 21 H 0.099 0.901 22 H 0.096 0.904 23 H 0.107 0.893 24 H 0.199 0.801 25 H 0.139 0.861 26 H 0.158 0.842 27 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.873 4.831 0.006 8.402 hybrid contribution -0.581 0.013 -0.009 0.581 sum -7.454 4.844 -0.003 8.890 Atomic orbital electron populations 1.20200 0.84309 1.04054 1.03473 1.23620 0.95178 0.85129 1.08018 1.23047 0.87962 1.00044 1.07418 1.70513 1.22574 1.08497 1.18511 1.23867 0.82026 0.88353 0.99719 1.17850 0.86097 0.89831 0.96861 1.21859 0.92347 1.00769 1.19928 1.22934 0.97329 0.90375 0.90996 1.69345 1.24515 1.10744 1.16762 1.19883 0.81544 0.94035 0.89031 1.19356 0.94693 0.87540 1.41428 0.88721 1.26106 0.94613 1.01921 0.93541 1.70112 0.98605 1.37256 1.27107 0.86145 0.78587 0.80559 0.80194 1.18664 1.20010 1.18660 1.68633 1.35536 1.02612 1.22457 1.84577 1.17586 1.35544 1.68458 0.90073 0.90419 0.89302 0.80094 0.86063 0.84200 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.64 10.43 36.00 0.38 -0.26 15 2 C -0.06 -1.02 7.39 -35.54 -0.26 -1.28 15 3 C -0.04 -0.69 11.80 -17.86 -0.21 -0.91 15 4 N -0.47 -9.51 10.97 -11.71 -0.13 -9.64 15 5 C 0.26 5.94 8.04 -13.89 -0.11 5.83 15 6 C 0.25 6.15 6.79 -82.69 -0.56 5.59 15 7 C -0.32 -7.43 9.84 -38.57 -0.38 -7.81 15 8 C 0.16 3.76 11.30 -17.27 -0.20 3.56 15 9 N -0.50 -13.62 7.85 -12.71 -0.10 -13.72 15 10 C 0.39 11.13 7.37 -158.40 -1.17 9.97 15 11 C -0.40 -10.77 9.37 -37.62 -0.35 -11.13 15 12 H 0.09 2.48 7.85 -52.49 -0.41 2.06 15 13 C 0.07 1.63 5.50 -17.36 -0.10 1.54 15 14 N -0.71 -18.30 11.42 55.55 0.63 -17.67 15 15 Si 0.92 18.24 29.56 -169.99 -5.02 13.21 15 16 H -0.26 -5.13 7.11 56.52 0.40 -4.73 15 17 H -0.28 -5.23 7.11 56.52 0.40 -4.83 15 18 H -0.26 -5.13 7.11 56.52 0.40 -4.72 15 19 N -0.57 -15.71 10.33 -9.26 -0.10 -15.80 15 20 O -0.18 -3.70 10.79 4.48 0.05 -3.65 15 21 H 0.08 0.69 8.14 -51.93 -0.42 0.27 15 22 H 0.08 0.76 8.14 -51.93 -0.42 0.34 15 23 H 0.09 0.64 8.14 -51.93 -0.42 0.21 15 24 H 0.18 2.08 8.06 -52.48 -0.42 1.66 15 25 H 0.12 2.54 7.91 -52.49 -0.42 2.13 15 26 H 0.14 2.78 8.06 -52.49 -0.42 2.36 15 27 H 0.28 6.42 8.29 -40.82 -0.34 6.08 15 LS Contribution 254.65 15.07 3.84 3.84 Total: -1.00 -31.64 254.65 -5.86 -37.51 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -2.07 Total: 0.83 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -2.96 Total: 5.10 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: 0.31 Total: -56.83 kcal Atomic # 8 Polarization: -3.70 SS G_CDS: 0.05 Total: -3.65 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.02 Total: 13.21 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -31.64 -5.86 -37.51 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259849541.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.980 kcal (2) G-P(sol) polarization free energy of solvation -31.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds