Wall clock time and date at job start Mon Mar 30 2020 03:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34782 * 126.37971 * 2 1 4 4 N 1.33924 * 107.83236 * 179.97438 * 3 2 1 5 5 C 1.31192 * 108.67098 * 0.02562 * 4 3 2 6 6 C 1.47857 * 125.71483 * 179.97438 * 5 4 3 7 7 C 1.40343 * 120.49377 * 0.02803 * 6 5 4 8 8 C 1.38844 * 118.54735 * 180.02562 * 7 6 5 9 9 N 1.31964 * 119.35470 * 359.97438 * 8 7 6 10 10 C 1.33474 * 120.96840 * 0.02562 * 9 8 7 11 11 C 1.41621 * 119.21320 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99981 * 179.97438 * 11 10 9 13 13 C 1.40039 * 119.99654 * 359.97438 * 11 10 9 14 14 N 1.30698 * 120.00454 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99717 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46864 * 60.00445 * 15 13 11 17 17 H 1.48496 * 109.46943 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47513 * 300.00331 * 15 13 11 19 19 N 1.32870 * 120.49720 * 179.74312 * 6 5 4 20 20 O 1.34448 * 108.57157 * 359.97438 * 5 4 3 21 21 H 1.08992 * 109.47458 * 89.99631 * 1 2 3 22 22 H 1.09002 * 109.47258 * 209.99866 * 1 2 3 23 23 H 1.09003 * 109.46953 * 329.99456 * 1 2 3 24 24 H 1.08003 * 126.08679 * 0.02562 * 3 2 1 25 25 H 1.07999 * 120.73042 * 359.97201 * 7 6 5 26 26 H 1.07995 * 120.32148 * 179.97438 * 8 7 6 27 27 H 0.96998 * 120.00231 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3064 1.0851 0.0000 4 7 3.5761 0.6591 0.0006 5 6 3.5789 -0.6528 0.0004 6 6 4.7813 -1.5133 0.0003 7 6 6.0642 -0.9444 0.0010 8 6 7.1652 -1.7903 0.0004 9 7 6.9774 -3.0965 -0.0004 10 6 5.7468 -3.6135 -0.0011 11 6 5.5882 -5.0208 -0.0024 12 1 4.5984 -5.4527 -0.0026 13 6 6.7151 -5.8523 -0.0036 14 7 7.9130 -5.3296 -0.0029 15 14 6.5059 -7.7086 -0.0047 16 1 5.7543 -8.1212 -1.2171 17 1 7.8418 -8.3571 -0.0065 18 1 5.7555 -8.1229 1.2079 19 7 4.6633 -2.8368 0.0052 20 8 2.3054 -1.0837 0.0002 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 1.9810 2.1150 0.0004 25 1 6.1924 0.1280 0.0012 26 1 8.1655 -1.3833 0.0005 27 1 8.6934 -5.9056 -0.0033 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259849541.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:09 Heat of formation + Delta-G solvation = 45.068662 kcal Electronic energy + Delta-G solvation = -14937.157869 eV Core-core repulsion = 12275.022417 eV Total energy + Delta-G solvation = -2662.135453 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.075 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.34270 -40.87141 -36.03338 -35.72857 -34.38748 -33.28158 -32.23271 -28.56855 -27.88842 -25.07064 -24.10694 -22.94410 -22.26110 -19.93522 -18.20177 -17.96467 -17.83798 -16.63344 -16.23501 -15.71545 -15.32067 -15.11002 -14.82096 -14.34621 -14.02022 -13.86469 -13.28318 -13.16997 -12.94863 -12.73290 -12.55576 -12.00289 -11.69023 -11.54578 -11.26380 -11.12340 -10.28508 -9.51860 -9.36316 -8.50825 -6.83678 -0.24463 0.65826 0.99785 1.40331 1.52038 1.54640 1.59448 1.82243 2.19033 2.71059 2.76150 3.76234 3.77879 3.97722 4.01176 4.18552 4.39437 4.49842 4.64847 4.69197 4.76452 5.00135 5.07165 5.11048 5.23240 5.28146 5.62047 6.07167 6.34657 6.49671 6.65175 6.97915 8.04187 8.30302 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.039740 B = 0.006517 C = 0.005616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.412600 B = 4295.325992 C = 4984.593692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.048 4.048 3 C -0.052 4.052 4 N -0.468 5.468 5 C 0.211 3.789 6 C 0.234 3.766 7 C -0.317 4.317 8 C 0.153 3.847 9 N -0.528 5.528 10 C 0.364 3.636 11 C -0.431 4.431 12 H 0.090 0.910 13 C 0.025 3.975 14 N -0.740 5.740 15 Si 1.003 2.997 16 H -0.258 1.258 17 H -0.258 1.258 18 H -0.258 1.258 19 N -0.605 5.605 20 O -0.203 6.203 21 H 0.103 0.897 22 H 0.079 0.921 23 H 0.128 0.872 24 H 0.230 0.770 25 H 0.144 0.856 26 H 0.178 0.822 27 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.853 6.533 -0.010 11.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.103 4.103 3 C -0.193 4.193 4 N -0.200 5.200 5 C 0.009 3.991 6 C 0.084 3.916 7 C -0.346 4.346 8 C -0.020 4.020 9 N -0.246 5.246 10 C 0.127 3.873 11 C -0.466 4.466 12 H 0.108 0.892 13 C -0.200 4.200 14 N -0.362 5.362 15 Si 0.821 3.179 16 H -0.182 1.182 17 H -0.182 1.182 18 H -0.182 1.182 19 N -0.328 5.328 20 O -0.088 6.088 21 H 0.121 0.879 22 H 0.098 0.902 23 H 0.146 0.854 24 H 0.246 0.754 25 H 0.162 0.838 26 H 0.195 0.805 27 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.191 5.701 -0.001 9.980 hybrid contribution -0.341 0.008 -0.010 0.342 sum -8.532 5.710 -0.011 10.266 Atomic orbital electron populations 1.20587 0.79888 1.06087 1.05432 1.24901 0.97329 0.83871 1.04155 1.23853 0.86233 1.02226 1.07016 1.70449 1.25110 1.07387 1.17051 1.23405 0.82096 0.88789 1.04810 1.18364 0.88204 0.89536 0.95512 1.22104 0.91768 1.01754 1.18925 1.23571 0.99242 0.89591 0.89609 1.69332 1.24290 1.12445 1.18580 1.20305 0.82341 0.94957 0.89674 1.19703 0.95595 0.88013 1.43285 0.89164 1.27072 0.93593 1.06965 0.92340 1.70160 0.99525 1.39594 1.26921 0.84962 0.79244 0.73465 0.80221 1.18227 1.18190 1.18226 1.68663 1.35586 1.03976 1.24554 1.84557 1.17723 1.37868 1.68622 0.87890 0.90220 0.85380 0.75352 0.83796 0.80544 0.90027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.02 10.43 71.23 0.74 -0.28 15 2 C -0.05 -1.41 7.39 24.89 0.18 -1.23 15 3 C -0.05 -1.51 11.80 83.58 0.99 -0.52 15 4 N -0.47 -18.41 10.97 -305.04 -3.35 -21.75 15 5 C 0.21 9.63 8.04 87.34 0.70 10.33 15 6 C 0.23 12.15 6.79 42.05 0.29 12.43 15 7 C -0.32 -14.96 9.84 22.93 0.23 -14.73 15 8 C 0.15 7.40 11.30 84.82 0.96 8.35 15 9 N -0.53 -30.01 7.85 -194.12 -1.52 -31.53 15 10 C 0.36 21.69 7.37 135.20 1.00 22.68 15 11 C -0.43 -24.53 9.37 23.54 0.22 -24.31 15 12 H 0.09 4.97 7.85 -2.91 -0.02 4.95 15 13 C 0.02 1.24 5.50 85.30 0.47 1.71 15 14 N -0.74 -38.89 11.42 21.84 0.25 -38.64 15 15 Si 1.00 37.56 29.56 68.60 2.03 39.59 15 16 H -0.26 -9.41 7.11 99.48 0.71 -8.70 15 17 H -0.26 -8.86 7.11 99.48 0.71 -8.15 15 18 H -0.26 -9.41 7.11 99.48 0.71 -8.71 15 19 N -0.60 -34.99 10.33 -183.20 -1.89 -36.88 15 20 O -0.20 -8.52 10.79 -6.90 -0.07 -8.59 15 21 H 0.10 1.31 8.14 -2.39 -0.02 1.29 15 22 H 0.08 1.31 8.14 -2.39 -0.02 1.29 15 23 H 0.13 1.12 8.14 -2.39 -0.02 1.10 15 24 H 0.23 4.12 8.06 -2.91 -0.02 4.10 15 25 H 0.14 5.97 7.91 -2.91 -0.02 5.95 15 26 H 0.18 6.90 8.06 -2.91 -0.02 6.88 15 27 H 0.29 13.40 8.29 -92.71 -0.77 12.63 15 Total: -1.00 -73.16 254.65 2.41 -70.74 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 1.20 Total: 12.62 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 5.77 Total: 14.45 kcal Atomic # 7 Polarization: -122.30 SS G_CDS: -6.51 Total: -128.81 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -0.07 Total: -8.59 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 2.03 Total: 39.59 kcal Total: -73.16 2.41 -70.74 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259849541.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.813 kcal (2) G-P(sol) polarization free energy of solvation -73.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds