Wall clock time and date at job start Mon Mar 30 2020 03:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30581 * 125.41594 * 2 1 4 4 C 1.33771 * 108.98562 * 179.74681 * 3 2 1 5 5 C 1.36489 * 107.45066 * 0.38983 * 4 3 2 6 6 C 1.46992 * 126.64462 * 179.87484 * 5 4 3 7 7 N 1.33252 * 118.95061 * 179.71672 * 6 5 4 8 8 C 1.31536 * 120.98848 * 179.97438 * 7 6 5 9 9 C 1.41405 * 118.90220 * 359.97438 * 8 7 6 10 10 C 1.40912 * 120.94329 * 179.72861 * 9 8 7 11 11 H 1.07995 * 120.00496 * 155.98672 * 10 9 8 12 12 C 1.39991 * 119.99645 * 335.98977 * 10 9 8 13 13 N 1.30823 * 120.00200 * 343.04569 * 12 10 9 14 14 Si 1.86800 * 119.99822 * 163.05302 * 12 10 9 15 15 H 1.48502 * 109.47275 * 59.99695 * 14 12 10 16 16 H 1.48501 * 109.47209 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47004 * 299.99747 * 14 12 10 18 18 C 1.41416 * 118.11936 * 0.02562 * 9 8 7 19 19 N 1.31535 * 118.89807 * 359.97438 * 18 9 8 20 20 O 1.33864 * 125.42446 * 179.97438 * 2 1 3 21 21 H 1.08997 * 109.47262 * 270.00563 * 1 2 3 22 22 H 1.08999 * 109.47065 * 30.01120 * 1 2 3 23 23 H 1.09003 * 109.46247 * 150.00495 * 1 2 3 24 24 H 1.08006 * 126.27563 * 180.25043 * 4 3 2 25 25 H 1.07998 * 120.54535 * 179.97438 * 8 7 6 26 26 H 0.97000 * 120.00266 * 179.97438 * 13 12 10 27 27 H 1.07995 * 120.55042 * 180.02562 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2638 1.0642 0.0000 4 6 3.5469 0.6858 0.0056 5 6 3.5712 -0.6788 0.0003 6 6 4.7661 -1.5350 0.0009 7 7 4.6112 -2.8585 0.0010 8 6 5.6525 -3.6622 0.0010 9 6 6.9499 -3.0997 0.0005 10 6 8.0954 -3.9204 0.0062 11 1 9.0325 -3.5423 -0.3746 12 6 8.0185 -5.2259 0.5056 13 7 7.0088 -5.5800 1.2585 14 14 9.3577 -6.4625 0.0972 15 1 10.6629 -5.9626 0.5992 16 1 9.0447 -7.7626 0.7429 17 1 9.4306 -6.6451 -1.3747 18 6 7.0653 -1.6903 0.0005 19 7 5.9695 -0.9628 0.0004 20 8 2.2830 -1.0908 0.0005 21 1 -0.3633 0.0001 1.0276 22 1 -0.3633 0.8899 -0.5140 23 1 -0.3632 -0.8901 -0.5138 24 1 4.4061 1.3402 0.0108 25 1 5.5187 -4.7338 0.0015 26 1 6.9553 -6.4847 1.6042 27 1 8.0371 -1.2191 -0.0004 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259872689.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:21 Heat of formation + Delta-G solvation = 48.156708 kcal Electronic energy + Delta-G solvation = -14871.376339 eV Core-core repulsion = 12209.374794 eV Total energy + Delta-G solvation = -2662.001545 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.075 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.55298 -39.09272 -34.70108 -34.17659 -32.21571 -32.06475 -30.60556 -27.84164 -25.31025 -23.20732 -22.45145 -21.30520 -20.45581 -17.85778 -17.10829 -16.19927 -16.15294 -15.38673 -15.22152 -13.81560 -13.46155 -13.40840 -13.08918 -12.78346 -12.47600 -12.29367 -12.18512 -11.98483 -11.61059 -11.32989 -10.90749 -10.71274 -10.14385 -9.87614 -9.61719 -9.49043 -8.84918 -7.91993 -7.60607 -7.31375 -4.86957 1.53434 2.52553 2.69202 2.80207 2.83122 2.92023 3.15451 3.36412 3.53620 4.27439 4.54145 5.13245 5.39570 5.48169 5.53333 5.60536 5.72639 5.93165 6.13936 6.24393 6.52581 6.59092 6.62465 6.66420 6.96316 7.32402 7.43923 7.83104 8.02541 8.13031 8.31636 8.62077 9.52533 9.56659 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.064874 B = 0.005618 C = 0.005241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.505366 B = 4982.658634 C = 5340.791634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C 0.144 3.856 3 N -0.481 5.481 4 C -0.044 4.044 5 C 0.082 3.918 6 C 0.177 3.823 7 N -0.477 5.477 8 C 0.075 3.925 9 C 0.017 3.983 10 C -0.404 4.404 11 H 0.095 0.905 12 C 0.067 3.933 13 N -0.762 5.762 14 Si 0.926 3.074 15 H -0.259 1.259 16 H -0.273 1.273 17 H -0.257 1.257 18 C 0.018 3.982 19 N -0.462 5.462 20 O -0.187 6.187 21 H 0.084 0.916 22 H 0.094 0.906 23 H 0.082 0.918 24 H 0.185 0.815 25 H 0.162 0.838 26 H 0.296 0.704 27 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.024 0.941 -1.362 3.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.061 4.061 3 N -0.211 5.211 4 C -0.187 4.187 5 C 0.027 3.973 6 C -0.077 4.077 7 N -0.189 5.189 8 C -0.101 4.101 9 C 0.010 3.990 10 C -0.433 4.433 11 H 0.113 0.887 12 C -0.156 4.156 13 N -0.384 5.384 14 Si 0.749 3.251 15 H -0.183 1.183 16 H -0.197 1.197 17 H -0.181 1.181 18 C -0.155 4.155 19 N -0.175 5.175 20 O -0.072 6.072 21 H 0.103 0.897 22 H 0.112 0.888 23 H 0.101 0.899 24 H 0.202 0.798 25 H 0.179 0.821 26 H 0.108 0.892 27 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.330 1.950 -1.207 4.900 hybrid contribution 1.755 -1.908 0.018 2.593 sum -2.575 0.041 -1.189 2.837 Atomic orbital electron populations 1.20074 0.82065 1.04335 1.03919 1.26040 0.96204 0.79157 1.04735 1.70140 1.02552 1.30287 1.18140 1.23135 0.94140 0.92390 1.09028 1.20527 0.80544 0.92524 1.03697 1.18159 0.86855 0.86388 1.16334 1.67831 1.36504 1.04228 1.10356 1.23315 0.86898 0.99199 1.00649 1.19378 0.95456 0.93768 0.90438 1.19703 0.96814 0.95836 1.30924 0.88667 1.26263 0.97531 0.99595 0.92254 1.69722 1.28270 1.21092 1.19293 0.86036 0.80345 0.78335 0.80434 1.18300 1.19706 1.18132 1.22791 0.94949 0.90456 1.07292 1.67300 0.98091 1.41943 1.10168 1.84451 1.16422 1.36623 1.69748 0.89699 0.88774 0.89902 0.79787 0.82089 0.89248 0.83625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.55 10.51 36.01 0.38 -0.17 15 2 C 0.14 2.64 8.32 -12.81 -0.11 2.54 15 3 N -0.48 -9.57 11.26 -10.71 -0.12 -9.69 15 4 C -0.04 -0.94 11.60 -17.34 -0.20 -1.14 15 5 C 0.08 1.94 7.20 -36.67 -0.26 1.67 15 6 C 0.18 4.53 7.57 -156.39 -1.18 3.35 15 7 N -0.48 -12.63 10.33 -10.70 -0.11 -12.74 15 8 C 0.08 1.94 9.98 -16.47 -0.16 1.77 15 9 C 0.02 0.42 5.60 -106.47 -0.60 -0.17 15 10 C -0.40 -9.18 9.08 -37.91 -0.34 -9.52 15 11 H 0.10 1.97 7.90 -52.49 -0.41 1.56 15 12 C 0.07 1.44 5.19 -17.32 -0.09 1.35 15 13 N -0.76 -17.20 10.93 55.55 0.61 -16.59 15 14 Si 0.93 15.76 29.59 -169.99 -5.03 10.73 15 15 H -0.26 -4.34 7.11 56.52 0.40 -3.94 15 16 H -0.27 -4.55 7.11 56.52 0.40 -4.15 15 17 H -0.26 -4.37 7.11 56.52 0.40 -3.97 15 18 C 0.02 0.42 11.11 -16.47 -0.18 0.23 15 19 N -0.46 -11.39 10.06 -10.70 -0.11 -11.49 15 20 O -0.19 -4.12 10.79 4.19 0.05 -4.08 15 21 H 0.08 0.85 8.14 -51.93 -0.42 0.43 15 22 H 0.09 0.93 8.14 -51.93 -0.42 0.51 15 23 H 0.08 0.84 8.14 -51.93 -0.42 0.42 15 24 H 0.19 3.60 8.06 -52.48 -0.42 3.17 15 25 H 0.16 4.07 6.22 -52.49 -0.33 3.74 15 26 H 0.30 5.97 8.30 -40.82 -0.34 5.63 15 27 H 0.15 2.97 8.06 -52.49 -0.42 2.55 15 LS Contribution 253.40 15.07 3.82 3.82 Total: -1.00 -28.55 253.40 -5.64 -34.19 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -1.99 Total: 5.95 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -2.76 Total: -0.10 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: 0.27 Total: -50.52 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: 0.05 Total: -4.08 kcal Atomic # 14 Polarization: 15.76 SS G_CDS: -5.03 Total: 10.73 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -28.55 -5.64 -34.19 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259872689.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.344 kcal (2) G-P(sol) polarization free energy of solvation -28.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds