Wall clock time and date at job start Mon Mar 30 2020 03:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30581 * 125.41594 * 2 1 4 4 C 1.33771 * 108.98562 * 179.74681 * 3 2 1 5 5 C 1.36489 * 107.45066 * 0.38983 * 4 3 2 6 6 C 1.46992 * 126.64462 * 179.87484 * 5 4 3 7 7 N 1.33252 * 118.95061 * 179.71672 * 6 5 4 8 8 C 1.31536 * 120.98848 * 179.97438 * 7 6 5 9 9 C 1.41405 * 118.90220 * 359.97438 * 8 7 6 10 10 C 1.40912 * 120.94329 * 179.72861 * 9 8 7 11 11 H 1.07995 * 120.00496 * 155.98672 * 10 9 8 12 12 C 1.39991 * 119.99645 * 335.98977 * 10 9 8 13 13 N 1.30823 * 120.00200 * 343.04569 * 12 10 9 14 14 Si 1.86800 * 119.99822 * 163.05302 * 12 10 9 15 15 H 1.48502 * 109.47275 * 59.99695 * 14 12 10 16 16 H 1.48501 * 109.47209 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47004 * 299.99747 * 14 12 10 18 18 C 1.41416 * 118.11936 * 0.02562 * 9 8 7 19 19 N 1.31535 * 118.89807 * 359.97438 * 18 9 8 20 20 O 1.33864 * 125.42446 * 179.97438 * 2 1 3 21 21 H 1.08997 * 109.47262 * 270.00563 * 1 2 3 22 22 H 1.08999 * 109.47065 * 30.01120 * 1 2 3 23 23 H 1.09003 * 109.46247 * 150.00495 * 1 2 3 24 24 H 1.08006 * 126.27563 * 180.25043 * 4 3 2 25 25 H 1.07998 * 120.54535 * 179.97438 * 8 7 6 26 26 H 0.97000 * 120.00266 * 179.97438 * 13 12 10 27 27 H 1.07995 * 120.55042 * 180.02562 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2638 1.0642 0.0000 4 6 3.5469 0.6858 0.0056 5 6 3.5712 -0.6788 0.0003 6 6 4.7661 -1.5350 0.0009 7 7 4.6112 -2.8585 0.0010 8 6 5.6525 -3.6622 0.0010 9 6 6.9499 -3.0997 0.0005 10 6 8.0954 -3.9204 0.0062 11 1 9.0325 -3.5423 -0.3746 12 6 8.0185 -5.2259 0.5056 13 7 7.0088 -5.5800 1.2585 14 14 9.3577 -6.4625 0.0972 15 1 10.6629 -5.9626 0.5992 16 1 9.0447 -7.7626 0.7429 17 1 9.4306 -6.6451 -1.3747 18 6 7.0653 -1.6903 0.0005 19 7 5.9695 -0.9628 0.0004 20 8 2.2830 -1.0908 0.0005 21 1 -0.3633 0.0001 1.0276 22 1 -0.3633 0.8899 -0.5140 23 1 -0.3632 -0.8901 -0.5138 24 1 4.4061 1.3402 0.0108 25 1 5.5187 -4.7338 0.0015 26 1 6.9553 -6.4847 1.6042 27 1 8.0371 -1.2191 -0.0004 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259872689.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:21 Heat of formation + Delta-G solvation = 27.945406 kcal Electronic energy + Delta-G solvation = -14872.252767 eV Core-core repulsion = 12209.374794 eV Total energy + Delta-G solvation = -2662.877973 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.075 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.14529 -40.92541 -36.43966 -35.77054 -34.08770 -33.60032 -32.15043 -29.38586 -26.95611 -25.01688 -24.18531 -22.97110 -22.02957 -19.61991 -18.81767 -17.97330 -17.74385 -16.98597 -16.87078 -15.38114 -15.18323 -14.84741 -14.76389 -14.06407 -13.96717 -13.83708 -13.69599 -13.25242 -13.24188 -12.89148 -12.28586 -12.25014 -11.74799 -11.49815 -11.43606 -11.35679 -10.58040 -9.79641 -9.32428 -8.99355 -6.65328 -0.15717 0.79539 0.92101 1.39877 1.51700 1.56553 1.63261 1.76279 2.10620 2.57793 3.17601 3.51989 3.52583 3.83451 4.15699 4.31823 4.49281 4.66051 4.68542 4.75740 4.78584 4.89886 5.00214 5.05324 5.47598 5.54005 5.58901 6.07669 6.17980 6.37136 6.71975 6.78734 7.65436 7.93225 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.064874 B = 0.005618 C = 0.005241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.505366 B = 4982.658634 C = 5340.791634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C 0.164 3.836 3 N -0.499 5.499 4 C -0.032 4.032 5 C 0.039 3.961 6 C 0.147 3.853 7 N -0.498 5.498 8 C 0.049 3.951 9 C -0.007 4.007 10 C -0.407 4.407 11 H 0.116 0.884 12 C 0.030 3.970 13 N -0.788 5.788 14 Si 1.004 2.996 15 H -0.249 1.249 16 H -0.267 1.267 17 H -0.254 1.254 18 C 0.011 3.989 19 N -0.467 5.467 20 O -0.207 6.207 21 H 0.110 0.890 22 H 0.118 0.882 23 H 0.102 0.898 24 H 0.194 0.806 25 H 0.156 0.844 26 H 0.307 0.693 27 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.620 0.594 -1.486 3.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.042 4.042 3 N -0.228 5.228 4 C -0.174 4.174 5 C -0.016 4.016 6 C -0.106 4.106 7 N -0.211 5.211 8 C -0.126 4.126 9 C -0.015 4.015 10 C -0.435 4.435 11 H 0.134 0.866 12 C -0.192 4.192 13 N -0.410 5.410 14 Si 0.822 3.178 15 H -0.172 1.172 16 H -0.191 1.191 17 H -0.178 1.178 18 C -0.163 4.163 19 N -0.180 5.180 20 O -0.094 6.094 21 H 0.128 0.872 22 H 0.137 0.863 23 H 0.120 0.880 24 H 0.211 0.789 25 H 0.173 0.827 26 H 0.119 0.881 27 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -3.946 1.631 -1.324 4.470 hybrid contribution 1.559 -1.819 0.101 2.398 sum -2.387 -0.188 -1.222 2.688 Atomic orbital electron populations 1.20529 0.77317 1.06490 1.06162 1.27560 0.98317 0.77889 1.00386 1.70223 1.01999 1.30707 1.19915 1.23313 0.95165 0.91698 1.07182 1.20481 0.80732 0.93045 1.07317 1.18540 0.88006 0.86431 1.17623 1.67771 1.37131 1.05018 1.11143 1.23302 0.87689 0.98988 1.02634 1.19652 0.95675 0.94620 0.91548 1.20188 0.96952 0.96586 1.29795 0.86608 1.27280 0.99739 1.00910 0.91267 1.69767 1.29755 1.22201 1.19290 0.84879 0.77208 0.75544 0.80138 1.17221 1.19090 1.17781 1.23313 0.95899 0.90443 1.06641 1.67344 0.98196 1.41947 1.10502 1.84446 1.16344 1.38227 1.70366 0.87170 0.86324 0.87957 0.78877 0.82728 0.88148 0.80731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.98 10.51 71.24 0.75 -0.23 15 2 C 0.16 5.82 8.32 88.30 0.73 6.55 15 3 N -0.50 -19.41 11.26 -302.50 -3.41 -22.82 15 4 C -0.03 -1.36 11.60 83.99 0.97 -0.39 15 5 C 0.04 1.88 7.20 24.16 0.17 2.05 15 6 C 0.15 7.83 7.57 136.74 1.04 8.86 15 7 N -0.50 -27.55 10.33 -187.76 -1.94 -29.49 15 8 C 0.05 2.62 9.98 85.52 0.85 3.47 15 9 C -0.01 -0.36 5.60 -21.06 -0.12 -0.48 15 10 C -0.41 -18.21 9.08 23.35 0.21 -18.00 15 11 H 0.12 4.58 7.90 -2.91 -0.02 4.55 15 12 C 0.03 1.23 5.19 85.27 0.44 1.67 15 13 N -0.79 -35.47 10.93 21.84 0.24 -35.23 15 14 Si 1.00 30.49 29.59 68.60 2.03 32.52 15 15 H -0.25 -7.16 7.11 99.48 0.71 -6.46 15 16 H -0.27 -7.81 7.11 99.48 0.71 -7.10 15 17 H -0.25 -7.58 7.11 99.48 0.71 -6.87 15 18 C 0.01 0.50 11.11 85.52 0.95 1.45 15 19 N -0.47 -23.58 10.06 -187.75 -1.89 -25.47 15 20 O -0.21 -9.21 10.79 -7.93 -0.09 -9.29 15 21 H 0.11 1.80 8.14 -2.39 -0.02 1.78 15 22 H 0.12 1.90 8.14 -2.39 -0.02 1.88 15 23 H 0.10 1.75 8.14 -2.39 -0.02 1.73 15 24 H 0.19 7.63 8.06 -2.91 -0.02 7.61 15 25 H 0.16 8.17 6.22 -2.91 -0.02 8.15 15 26 H 0.31 12.20 8.30 -92.71 -0.77 11.43 15 27 H 0.18 7.00 8.06 -2.91 -0.02 6.98 15 Total: -1.00 -63.28 253.40 2.16 -61.12 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 1.21 Total: 23.68 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: 6.01 Total: 4.97 kcal Atomic # 7 Polarization: -106.01 SS G_CDS: -7.00 Total: -113.00 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -0.09 Total: -9.29 kcal Atomic # 14 Polarization: 30.49 SS G_CDS: 2.03 Total: 32.52 kcal Total: -63.28 2.16 -61.12 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259872689.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.070 kcal (2) G-P(sol) polarization free energy of solvation -63.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds