Wall clock time and date at job start Mon Mar 30 2020 03:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35782 * 117.00694 * 2 1 4 4 C 1.39790 * 119.32607 * 0.02562 * 3 2 1 5 5 C 1.36265 * 121.67026 * 179.72045 * 4 3 2 6 6 C 1.40055 * 119.67463 * 0.27815 * 5 4 3 7 7 N 1.33949 * 122.36084 * 180.02562 * 6 5 4 8 8 N 1.28895 * 119.65061 * 179.97438 * 7 6 5 9 9 C 1.34183 * 122.62955 * 359.97438 * 8 7 6 10 10 C 1.41248 * 119.01622 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00025 * 173.60782 * 10 9 8 12 12 C 1.40181 * 119.99988 * 353.60685 * 10 9 8 13 13 N 1.30625 * 120.00319 * 6.32850 * 12 10 9 14 14 Si 1.86804 * 120.00086 * 186.32942 * 12 10 9 15 15 H 1.48500 * 109.47135 * 94.98312 * 14 12 10 16 16 H 1.48496 * 109.47161 * 214.98422 * 14 12 10 17 17 H 1.48507 * 109.47036 * 334.98714 * 14 12 10 18 18 N 1.33307 * 121.96884 * 0.02562 * 9 8 7 19 19 C 1.33289 * 118.75272 * 359.97438 * 18 9 8 20 20 C 1.37736 * 119.33523 * 180.29132 * 3 2 1 21 21 H 1.08998 * 109.47242 * 59.99154 * 1 2 3 22 22 H 1.08998 * 109.47736 * 179.97438 * 1 2 3 23 23 H 1.09009 * 109.46644 * 299.99918 * 1 2 3 24 24 H 1.07998 * 119.16721 * 359.97438 * 4 3 2 25 25 H 1.08000 * 120.16898 * 180.29508 * 5 4 3 26 26 H 0.96998 * 120.00762 * 180.02562 * 13 12 10 27 27 H 1.08002 * 120.39477 * 0.02562 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2097 0.0000 4 6 1.2706 2.3732 0.0005 5 6 1.8392 3.6115 0.0062 6 6 3.2344 3.7339 0.0058 7 7 3.8497 4.9237 0.0117 8 7 5.1377 4.9754 0.0115 9 6 5.9060 3.8754 0.0060 10 6 7.3109 4.0209 0.0067 11 1 7.9439 3.1515 0.1065 12 6 7.8838 5.2939 -0.1221 13 7 7.1232 6.3558 -0.1185 14 14 9.7349 5.4715 -0.2991 15 1 10.0888 5.5551 -1.7389 16 1 10.1820 6.7069 0.3931 17 1 10.4055 4.2937 0.3079 18 7 5.3830 2.6492 -0.0001 19 6 4.0566 2.5179 -0.0003 20 6 3.4218 1.2657 -0.0061 21 1 -0.3633 0.5140 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8901 24 1 0.1939 2.2885 0.0005 25 1 1.2171 4.4944 0.0113 26 1 7.5195 7.2366 -0.2080 27 1 4.0056 0.3571 -0.0113 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260057170.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:12 Heat of formation + Delta-G solvation = 46.903749 kcal Electronic energy + Delta-G solvation = -15066.193321 eV Core-core repulsion = 12404.137444 eV Total energy + Delta-G solvation = -2662.055877 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.075 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.00157 -38.87816 -35.71382 -34.11743 -33.34086 -30.17596 -29.86485 -27.23054 -26.52417 -24.17667 -22.54530 -21.30939 -19.02413 -17.78883 -17.40417 -16.14017 -15.48504 -15.35590 -15.20388 -14.02512 -13.92166 -13.57361 -12.95125 -12.58976 -12.25988 -11.91535 -11.60229 -11.53314 -11.32967 -10.91034 -10.63472 -10.58680 -10.36739 -10.35115 -9.68793 -9.54019 -8.05253 -7.54055 -7.48460 -6.99838 -5.03704 1.12120 1.84679 2.84016 2.90720 2.97062 3.10351 3.55066 3.66572 3.73363 4.48193 5.08368 5.21726 5.26015 5.33620 5.46932 5.51106 5.55357 5.58644 5.89053 6.16315 6.25214 6.71262 6.73911 6.79270 6.81467 7.06062 7.25201 7.79966 7.80699 8.12782 8.16118 8.89815 9.78904 10.27426 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.064104 B = 0.006195 C = 0.005671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.683023 B = 4518.402292 C = 4936.359502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.321 6.321 3 C 0.166 3.834 4 C -0.261 4.261 5 C 0.020 3.980 6 C -0.145 4.145 7 N -0.153 5.153 8 N -0.231 5.231 9 C 0.311 3.689 10 C -0.352 4.352 11 H 0.105 0.895 12 C 0.054 3.946 13 N -0.692 5.692 14 Si 0.931 3.069 15 H -0.264 1.264 16 H -0.270 1.270 17 H -0.255 1.255 18 N -0.567 5.567 19 C 0.213 3.787 20 C -0.187 4.187 21 H 0.053 0.947 22 H 0.093 0.907 23 H 0.053 0.947 24 H 0.122 0.878 25 H 0.126 0.874 26 H 0.288 0.712 27 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.568 -4.376 -0.168 7.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.117 3.883 4 C -0.283 4.283 5 C -0.002 4.002 6 C -0.276 4.276 7 N -0.022 5.022 8 N -0.102 5.102 9 C 0.078 3.922 10 C -0.388 4.388 11 H 0.123 0.877 12 C -0.176 4.176 13 N -0.312 5.312 14 Si 0.753 3.247 15 H -0.188 1.188 16 H -0.195 1.195 17 H -0.178 1.178 18 N -0.294 5.294 19 C 0.066 3.934 20 C -0.209 4.209 21 H 0.072 0.928 22 H 0.112 0.888 23 H 0.072 0.928 24 H 0.140 0.860 25 H 0.144 0.856 26 H 0.100 0.900 27 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.873 -3.514 -0.167 6.847 hybrid contribution -0.048 -0.523 -0.106 0.535 sum -5.921 -4.037 -0.272 7.172 Atomic orbital electron populations 1.22976 0.79131 1.03188 1.01279 1.86020 1.20854 1.27721 1.88810 1.18790 0.91712 0.83471 0.94344 1.20587 0.99202 0.92120 1.16408 1.20257 0.92173 0.96607 0.91194 1.21355 0.95455 0.93463 1.17293 1.74280 1.04996 1.21467 1.01493 1.74724 0.96423 1.26439 1.12612 1.21158 0.96109 0.84163 0.90764 1.19657 0.88831 0.94515 1.35816 0.87685 1.26377 1.02356 0.95125 0.93698 1.70012 1.37901 0.99563 1.23727 0.85900 0.79538 0.79493 0.79747 1.18832 1.19456 1.17813 1.69698 1.08826 1.24866 1.26015 1.20038 0.90920 0.92073 0.90386 1.19659 0.90481 0.96555 1.14225 0.92820 0.88827 0.92811 0.86020 0.85567 0.90006 0.85124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.79 101.05 0.99 1.31 15 2 O -0.32 -5.17 10.46 -19.06 -0.20 -5.37 15 3 C 0.17 3.10 6.67 -39.18 -0.26 2.84 15 4 C -0.26 -4.49 8.91 -39.71 -0.35 -4.84 15 5 C 0.02 0.40 10.01 -39.61 -0.40 0.00 15 6 C -0.15 -3.56 6.83 -82.81 -0.57 -4.12 15 7 N -0.15 -4.11 11.71 33.26 0.39 -3.72 15 8 N -0.23 -6.62 8.97 30.80 0.28 -6.34 15 9 C 0.31 8.87 7.39 -157.92 -1.17 7.70 15 10 C -0.35 -9.26 9.35 -37.71 -0.35 -9.62 15 11 H 0.11 2.60 7.86 -52.49 -0.41 2.19 15 12 C 0.05 1.30 5.49 -17.34 -0.10 1.20 15 13 N -0.69 -17.32 11.42 55.56 0.63 -16.68 15 14 Si 0.93 17.20 29.57 -169.99 -5.03 12.17 15 15 H -0.26 -4.80 7.11 56.52 0.40 -4.40 15 16 H -0.27 -4.80 7.11 56.52 0.40 -4.40 15 17 H -0.25 -4.62 7.11 56.52 0.40 -4.22 15 18 N -0.57 -15.68 10.48 -9.41 -0.10 -15.78 15 19 C 0.21 5.40 6.75 -82.97 -0.56 4.84 15 20 C -0.19 -4.08 10.01 -38.95 -0.39 -4.47 15 21 H 0.05 0.52 7.62 -51.93 -0.40 0.13 15 22 H 0.09 0.76 8.14 -51.93 -0.42 0.34 15 23 H 0.05 0.52 7.61 -51.92 -0.40 0.13 15 24 H 0.12 1.62 6.14 -52.49 -0.32 1.30 15 25 H 0.13 2.11 8.06 -52.49 -0.42 1.69 15 26 H 0.29 6.33 8.29 -40.82 -0.34 5.99 15 27 H 0.13 2.72 8.06 -52.49 -0.42 2.30 15 LS Contribution 246.87 15.07 3.72 3.72 Total: -1.00 -30.73 246.87 -5.38 -36.12 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -1.93 Total: 1.04 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -3.15 Total: -5.16 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 1.20 Total: -42.52 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -0.20 Total: -5.37 kcal Atomic # 14 Polarization: 17.20 SS G_CDS: -5.03 Total: 12.17 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -30.73 -5.38 -36.12 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260057170.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.020 kcal (2) G-P(sol) polarization free energy of solvation -30.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds