Wall clock time and date at job start Mon Mar 30 2020 03:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35782 * 117.00694 * 2 1 4 4 C 1.39790 * 119.32607 * 0.02562 * 3 2 1 5 5 C 1.36265 * 121.67026 * 179.72045 * 4 3 2 6 6 C 1.40055 * 119.67463 * 0.27815 * 5 4 3 7 7 N 1.33949 * 122.36084 * 180.02562 * 6 5 4 8 8 N 1.28895 * 119.65061 * 179.97438 * 7 6 5 9 9 C 1.34183 * 122.62955 * 359.97438 * 8 7 6 10 10 C 1.41248 * 119.01622 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00025 * 173.60782 * 10 9 8 12 12 C 1.40181 * 119.99988 * 353.60685 * 10 9 8 13 13 N 1.30625 * 120.00319 * 6.32850 * 12 10 9 14 14 Si 1.86804 * 120.00086 * 186.32942 * 12 10 9 15 15 H 1.48500 * 109.47135 * 94.98312 * 14 12 10 16 16 H 1.48496 * 109.47161 * 214.98422 * 14 12 10 17 17 H 1.48507 * 109.47036 * 334.98714 * 14 12 10 18 18 N 1.33307 * 121.96884 * 0.02562 * 9 8 7 19 19 C 1.33289 * 118.75272 * 359.97438 * 18 9 8 20 20 C 1.37736 * 119.33523 * 180.29132 * 3 2 1 21 21 H 1.08998 * 109.47242 * 59.99154 * 1 2 3 22 22 H 1.08998 * 109.47736 * 179.97438 * 1 2 3 23 23 H 1.09009 * 109.46644 * 299.99918 * 1 2 3 24 24 H 1.07998 * 119.16721 * 359.97438 * 4 3 2 25 25 H 1.08000 * 120.16898 * 180.29508 * 5 4 3 26 26 H 0.96998 * 120.00762 * 180.02562 * 13 12 10 27 27 H 1.08002 * 120.39477 * 0.02562 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2097 0.0000 4 6 1.2706 2.3732 0.0005 5 6 1.8392 3.6115 0.0062 6 6 3.2344 3.7339 0.0058 7 7 3.8497 4.9237 0.0117 8 7 5.1377 4.9754 0.0115 9 6 5.9060 3.8754 0.0060 10 6 7.3109 4.0209 0.0067 11 1 7.9439 3.1515 0.1065 12 6 7.8838 5.2939 -0.1221 13 7 7.1232 6.3558 -0.1185 14 14 9.7349 5.4715 -0.2991 15 1 10.0888 5.5551 -1.7389 16 1 10.1820 6.7069 0.3931 17 1 10.4055 4.2937 0.3079 18 7 5.3830 2.6492 -0.0001 19 6 4.0566 2.5179 -0.0003 20 6 3.4218 1.2657 -0.0061 21 1 -0.3633 0.5140 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8901 24 1 0.1939 2.2885 0.0005 25 1 1.2171 4.4944 0.0113 26 1 7.5195 7.2366 -0.2080 27 1 4.0056 0.3571 -0.0113 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260057170.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:11 Heat of formation + Delta-G solvation = 24.832507 kcal Electronic energy + Delta-G solvation = -15067.150402 eV Core-core repulsion = 12404.137444 eV Total energy + Delta-G solvation = -2663.012958 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.075 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.75764 -40.39712 -37.34252 -35.94999 -35.18716 -31.89651 -31.52444 -28.76736 -27.93274 -25.94883 -24.30638 -23.02918 -20.66611 -19.56793 -19.04910 -17.73913 -17.07958 -16.71798 -16.67633 -15.80379 -15.53174 -15.18164 -14.54702 -14.06604 -13.54938 -13.35523 -13.27810 -13.13250 -12.93442 -12.45864 -12.41271 -12.29921 -11.95924 -11.86031 -11.46424 -11.19259 -9.81317 -9.50489 -9.13706 -8.76416 -6.98137 -0.62496 0.08322 1.19769 1.37849 1.45649 1.57614 2.05852 2.13125 2.29120 2.72224 3.40014 3.59188 3.69174 3.79948 3.92271 4.24283 4.39620 4.50051 4.53169 4.60620 4.80946 4.92504 5.08790 5.15041 5.21400 5.36625 5.62605 5.87565 6.18677 6.31592 6.43667 6.96565 8.08282 8.32189 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.064104 B = 0.006195 C = 0.005671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.683023 B = 4518.402292 C = 4936.359502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.328 6.328 3 C 0.197 3.803 4 C -0.229 4.229 5 C 0.017 3.983 6 C -0.163 4.163 7 N -0.171 5.171 8 N -0.277 5.277 9 C 0.283 3.717 10 C -0.387 4.387 11 H 0.106 0.894 12 C 0.015 3.985 13 N -0.731 5.731 14 Si 1.015 2.985 15 H -0.257 1.257 16 H -0.255 1.255 17 H -0.250 1.250 18 N -0.598 5.598 19 C 0.189 3.811 20 C -0.221 4.221 21 H 0.072 0.928 22 H 0.124 0.876 23 H 0.072 0.928 24 H 0.178 0.822 25 H 0.160 0.840 26 H 0.299 0.701 27 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.856 -5.394 -0.279 10.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.240 6.240 3 C 0.146 3.854 4 C -0.251 4.251 5 C -0.005 4.005 6 C -0.297 4.297 7 N -0.037 5.037 8 N -0.146 5.146 9 C 0.050 3.950 10 C -0.423 4.423 11 H 0.124 0.876 12 C -0.211 4.211 13 N -0.352 5.352 14 Si 0.831 3.169 15 H -0.181 1.181 16 H -0.179 1.179 17 H -0.174 1.174 18 N -0.327 5.327 19 C 0.043 3.957 20 C -0.243 4.243 21 H 0.090 0.910 22 H 0.142 0.858 23 H 0.091 0.909 24 H 0.196 0.804 25 H 0.178 0.822 26 H 0.111 0.889 27 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.211 -4.522 -0.273 9.378 hybrid contribution 0.184 -0.501 -0.063 0.538 sum -8.027 -5.024 -0.336 9.475 Atomic orbital electron populations 1.23515 0.75597 1.06069 1.03023 1.86055 1.24313 1.26079 1.87576 1.18858 0.90850 0.85244 0.90437 1.21149 1.01780 0.90218 1.11913 1.20678 0.90065 0.99104 0.90699 1.21931 0.97632 0.92441 1.17726 1.74082 1.04913 1.22979 1.01737 1.74644 0.97055 1.26771 1.16155 1.21612 0.97197 0.84532 0.91701 1.20009 0.88481 0.96018 1.37760 0.87628 1.27430 1.07639 0.93683 0.92352 1.70070 1.40493 1.00434 1.24193 0.84718 0.72245 0.79922 0.79984 1.18095 1.17860 1.17367 1.69670 1.10530 1.24889 1.27561 1.20583 0.90665 0.93894 0.90559 1.19686 0.92359 0.95189 1.17069 0.90953 0.85809 0.90942 0.80433 0.82247 0.88925 0.85327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.79 113.37 1.11 1.29 15 2 O -0.33 -9.12 10.46 -91.10 -0.95 -10.07 15 3 C 0.20 6.73 6.67 22.53 0.15 6.88 15 4 C -0.23 -6.76 8.91 22.19 0.20 -6.56 15 5 C 0.02 0.60 10.01 22.25 0.22 0.83 15 6 C -0.16 -8.09 6.83 41.50 0.28 -7.81 15 7 N -0.17 -9.54 11.71 -48.68 -0.57 -10.11 15 8 N -0.28 -16.82 8.97 -56.46 -0.51 -17.33 15 9 C 0.28 17.20 7.39 134.89 1.00 18.20 15 10 C -0.39 -21.59 9.35 23.48 0.22 -21.37 15 11 H 0.11 5.58 7.86 -2.91 -0.02 5.56 15 12 C 0.01 0.74 5.49 85.34 0.47 1.21 15 13 N -0.73 -38.27 11.42 21.86 0.25 -38.02 15 14 Si 1.01 35.90 29.57 68.60 2.03 37.93 15 15 H -0.26 -8.72 7.11 99.48 0.71 -8.01 15 16 H -0.25 -8.30 7.11 99.48 0.71 -7.59 15 17 H -0.25 -8.57 7.11 99.48 0.71 -7.86 15 18 N -0.60 -35.04 10.48 -183.69 -1.92 -36.97 15 19 C 0.19 9.88 6.75 41.68 0.28 10.16 15 20 C -0.22 -9.60 10.01 22.68 0.23 -9.38 15 21 H 0.07 0.92 7.62 -2.39 -0.02 0.90 15 22 H 0.12 1.26 8.14 -2.39 -0.02 1.24 15 23 H 0.07 0.92 7.61 -2.38 -0.02 0.90 15 24 H 0.18 3.34 6.14 -2.91 -0.02 3.33 15 25 H 0.16 4.71 8.06 -2.91 -0.02 4.68 15 26 H 0.30 13.60 8.29 -92.71 -0.77 12.83 15 27 H 0.13 5.49 8.06 -2.91 -0.02 5.46 15 Total: -1.00 -73.37 246.87 3.69 -69.68 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 1.21 Total: 11.43 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: 4.16 Total: -6.55 kcal Atomic # 7 Polarization: -99.67 SS G_CDS: -2.75 Total: -102.42 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -0.95 Total: -10.07 kcal Atomic # 14 Polarization: 35.90 SS G_CDS: 2.03 Total: 37.93 kcal Total: -73.37 3.69 -69.68 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260057170.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.513 kcal (2) G-P(sol) polarization free energy of solvation -73.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds