Wall clock time and date at job start Mon Mar 30 2020 02:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31043 * 1 3 3 Si 1.86801 * 119.99823 * 2 1 4 4 H 1.48502 * 109.47186 * 239.99391 * 3 2 1 5 5 H 1.48492 * 109.47377 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47204 * 119.99974 * 3 2 1 7 7 C 1.39791 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99651 * 163.03733 * 7 2 1 9 9 C 1.40511 * 120.00351 * 343.30014 * 7 2 1 10 10 C 1.41202 * 121.12346 * 335.35249 * 9 7 2 11 11 N 1.31306 * 119.64664 * 179.63473 * 10 9 7 12 12 C 1.33744 * 122.64393 * 0.70102 * 11 10 9 13 13 C 1.39878 * 118.75761 * 179.62379 * 12 11 10 14 14 C 1.38703 * 119.44394 * 179.97438 * 13 12 11 15 15 N 1.38362 * 120.37703 * 180.02562 * 14 13 12 16 16 C 1.40942 * 119.24674 * 0.02562 * 14 13 12 17 17 C 1.34885 * 119.88285 * 359.93523 * 16 14 13 18 18 N 1.36472 * 121.05300 * 0.10759 * 17 16 14 19 19 C 1.35248 * 119.08828 * 179.97438 * 18 17 16 20 20 O 1.21792 * 120.91347 * 0.02562 * 19 18 17 21 21 H 0.96996 * 119.99670 * 0.02562 * 1 2 3 22 22 H 1.08002 * 120.17338 * 359.97438 * 10 9 7 23 23 H 1.08001 * 120.27558 * 359.97218 * 13 12 11 24 24 H 0.96995 * 120.00166 * 359.97438 * 15 14 13 25 25 H 0.97002 * 120.00099 * 179.97438 * 15 14 13 26 26 H 1.08003 * 120.06015 * 179.97438 * 16 14 13 27 27 H 1.08006 * 119.47607 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3104 0.0000 0.0000 3 14 2.2444 1.6178 0.0000 4 1 3.0983 1.6964 -1.2124 5 1 1.2795 2.7464 -0.0006 6 1 3.0981 1.6965 1.2125 7 6 2.0094 -1.2106 0.0005 8 1 3.0541 -1.2311 -0.2723 9 6 1.3513 -2.4017 0.3507 10 6 0.2035 -2.3868 1.1731 11 7 -0.3929 -3.5166 1.4764 12 6 0.0496 -4.7037 1.0477 13 6 -0.6445 -5.8575 1.4267 14 6 -0.1985 -7.0960 0.9898 15 7 -0.8706 -8.2497 1.3526 16 6 0.9473 -7.1660 0.1719 17 6 1.5941 -6.0349 -0.1769 18 7 1.1590 -4.8144 0.2516 19 6 1.8381 -3.7060 -0.1217 20 8 2.8252 -3.7861 -0.8307 21 1 -0.4849 0.8400 -0.0004 22 1 -0.1849 -1.4506 1.5460 23 1 -1.5204 -5.7845 2.0544 24 1 -1.6583 -8.1952 1.9160 25 1 -0.5541 -9.1130 1.0436 26 1 1.3063 -8.1235 -0.1755 27 1 2.4711 -6.0961 -0.8042 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260065589.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:24 Heat of formation + Delta-G solvation = 5.776046 kcal Electronic energy + Delta-G solvation = -15386.062876 eV Core-core repulsion = 12722.223568 eV Total energy + Delta-G solvation = -2663.839308 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.075 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.66564 -39.15633 -37.86778 -36.50669 -35.26617 -32.40368 -31.78154 -30.45733 -26.94374 -25.19417 -24.06187 -23.63543 -20.44831 -19.13746 -18.83350 -18.45503 -17.09488 -16.88377 -16.82593 -16.36995 -16.01559 -14.95403 -14.77610 -14.41820 -14.24422 -13.60884 -13.48294 -13.11663 -12.99821 -12.80229 -12.63959 -12.32207 -12.07753 -11.22515 -10.94172 -10.34029 -9.97647 -9.48597 -8.81109 -8.37956 -5.98828 -0.11223 0.06221 1.36440 1.39778 1.51003 1.52165 1.78742 2.08255 2.20840 2.77105 2.95588 3.52209 3.67986 3.83647 4.09093 4.30045 4.39837 4.76775 4.90730 5.03634 5.16809 5.28205 5.38411 5.58016 5.82505 6.14091 6.21194 6.48423 6.57054 6.69905 7.06572 7.16272 7.67974 8.23313 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.053195 B = 0.007328 C = 0.006547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.234101 B = 3820.107131 C = 4276.053121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.024 3.976 3 Si 0.997 3.003 4 H -0.263 1.263 5 H -0.257 1.257 6 H -0.257 1.257 7 C -0.432 4.432 8 H 0.070 0.930 9 C -0.094 4.094 10 C 0.009 3.991 11 N -0.528 5.528 12 C 0.263 3.737 13 C -0.237 4.237 14 C 0.244 3.756 15 N -0.835 5.835 16 C -0.173 4.173 17 C 0.076 3.924 18 N -0.439 5.439 19 C 0.458 3.542 20 O -0.592 6.592 21 H 0.296 0.704 22 H 0.147 0.853 23 H 0.150 0.850 24 H 0.412 0.588 25 H 0.416 0.584 26 H 0.193 0.807 27 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.303 -12.661 2.451 13.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.191 4.191 3 Si 0.816 3.184 4 H -0.188 1.188 5 H -0.180 1.180 6 H -0.181 1.181 7 C -0.462 4.462 8 H 0.089 0.911 9 C -0.103 4.103 10 C -0.140 4.140 11 N -0.249 5.249 12 C 0.023 3.977 13 C -0.267 4.267 14 C 0.129 3.871 15 N -0.374 5.374 16 C -0.196 4.196 17 C -0.045 4.045 18 N -0.148 5.148 19 C 0.263 3.737 20 O -0.479 6.479 21 H 0.107 0.893 22 H 0.164 0.836 23 H 0.167 0.833 24 H 0.242 0.758 25 H 0.247 0.753 26 H 0.210 0.790 27 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -2.600 -12.287 2.502 12.805 hybrid contribution 0.789 0.739 -0.603 1.238 sum -1.811 -11.548 1.899 11.842 Atomic orbital electron populations 1.69871 1.08845 1.31396 1.33992 1.26858 0.95791 1.04521 0.91907 0.85030 0.78633 0.74621 0.80108 1.18768 1.18036 1.18115 1.19263 0.97424 0.91413 1.38127 0.91136 1.20565 0.98896 0.91255 0.99556 1.22407 0.97355 0.94619 0.99647 1.67769 1.32262 0.96897 1.27939 1.19847 0.87605 0.94831 0.95385 1.19956 1.06092 0.87415 1.13262 1.17642 0.90737 0.87488 0.91203 1.41980 1.32888 1.05013 1.57534 1.20818 0.96894 0.98641 1.03238 1.22194 1.00177 0.83646 0.98484 1.43767 1.24012 1.08202 1.38786 1.19603 0.85379 0.85392 0.83327 1.90612 1.28585 1.86626 1.42030 0.89304 0.83620 0.83282 0.75769 0.75281 0.79029 0.81404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.75 10.96 21.81 0.24 -43.51 15 2 C 0.02 1.26 5.19 85.19 0.44 1.70 15 3 Si 1.00 39.75 29.59 68.60 2.03 41.78 15 4 H -0.26 -10.37 7.11 99.48 0.71 -9.66 15 5 H -0.26 -9.31 7.11 99.48 0.71 -8.60 15 6 H -0.26 -9.96 7.11 99.48 0.71 -9.25 15 7 C -0.43 -25.49 8.82 23.20 0.20 -25.28 15 8 H 0.07 4.21 7.80 -2.91 -0.02 4.18 15 9 C -0.09 -5.64 5.75 -19.69 -0.11 -5.75 15 10 C 0.01 0.52 9.95 85.50 0.85 1.37 15 11 N -0.53 -27.83 10.19 -191.18 -1.95 -29.78 15 12 C 0.26 12.22 7.33 133.51 0.98 13.20 15 13 C -0.24 -8.21 9.82 22.78 0.22 -7.98 15 14 C 0.24 6.11 6.79 38.89 0.26 6.37 15 15 N -0.84 -11.53 9.03 -51.03 -0.46 -11.99 15 16 C -0.17 -4.26 9.87 22.16 0.22 -4.04 15 17 C 0.08 2.69 10.06 83.20 0.84 3.53 15 18 N -0.44 -20.71 2.78 -471.63 -1.31 -22.03 15 19 C 0.46 25.98 7.58 86.47 0.66 26.63 15 20 O -0.59 -35.00 16.22 -4.64 -0.08 -35.07 15 21 H 0.30 14.12 8.30 -92.71 -0.77 13.35 15 22 H 0.15 8.55 6.22 -2.91 -0.02 8.53 15 23 H 0.15 4.68 8.06 -2.91 -0.02 4.66 15 24 H 0.41 4.51 8.83 -92.71 -0.82 3.69 15 25 H 0.42 3.11 8.84 -92.71 -0.82 2.29 15 26 H 0.19 2.66 8.06 -2.91 -0.02 2.64 15 27 H 0.17 5.69 7.31 -2.91 -0.02 5.67 15 Total: -1.00 -76.00 244.66 2.64 -73.37 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -0.40 Total: 17.49 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: 4.56 Total: 9.74 kcal Atomic # 7 Polarization: -103.82 SS G_CDS: -3.48 Total: -107.30 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -0.08 Total: -35.07 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.78 kcal Total: -76.00 2.64 -73.37 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260065589.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.144 kcal (2) G-P(sol) polarization free energy of solvation -76.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds