Wall clock time and date at job start Mon Mar 30 2020 03:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35686 * 116.99736 * 2 1 4 4 C 1.37871 * 120.39555 * 359.97438 * 3 2 1 5 5 C 1.38883 * 121.39527 * 179.97438 * 4 3 2 6 6 C 1.37637 * 121.70176 * 0.27470 * 5 4 3 7 7 C 1.39781 * 119.65619 * 359.45505 * 6 5 4 8 8 N 1.34109 * 122.38170 * 180.23276 * 7 6 5 9 9 N 1.28916 * 119.60196 * 180.30225 * 8 7 6 10 10 C 1.34238 * 122.56898 * 359.97438 * 9 8 7 11 11 C 1.41106 * 119.01120 * 180.02562 * 10 9 8 12 12 H 1.08004 * 119.99966 * 173.60029 * 11 10 9 13 13 C 1.40152 * 120.00045 * 353.59573 * 11 10 9 14 14 N 1.30652 * 120.00011 * 6.34129 * 13 11 10 15 15 Si 1.86802 * 120.00020 * 186.33271 * 13 11 10 16 16 H 1.48493 * 109.46993 * 94.98736 * 15 13 11 17 17 H 1.48500 * 109.47131 * 214.99006 * 15 13 11 18 18 H 1.48503 * 109.47223 * 334.98920 * 15 13 11 19 19 N 1.33374 * 121.97834 * 0.02562 * 10 9 8 20 20 C 1.33019 * 118.79672 * 359.97438 * 19 10 9 21 21 H 1.09001 * 109.47019 * 300.00156 * 1 2 3 22 22 H 1.08995 * 109.47566 * 60.00220 * 1 2 3 23 23 H 1.09000 * 109.47483 * 180.02562 * 1 2 3 24 24 H 1.08000 * 119.30129 * 359.95841 * 4 3 2 25 25 H 1.08007 * 119.14366 * 180.02562 * 5 4 3 26 26 H 1.08002 * 120.16889 * 179.70559 * 6 5 4 27 27 H 0.96999 * 120.00101 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 1.3020 2.3704 -0.0005 5 6 1.9107 3.6187 0.0000 6 6 3.2803 3.7555 -0.0046 7 6 4.0893 2.6156 0.0017 8 7 5.4285 2.6853 0.0023 9 7 6.1228 1.5990 0.0023 10 6 5.5587 0.3809 0.0022 11 6 6.3908 -0.7586 0.0028 12 1 5.9586 -1.7429 0.1069 13 6 7.7783 -0.6132 -0.1320 14 7 8.3131 0.5788 -0.1335 15 14 8.8629 -2.1237 -0.3091 16 1 9.1075 -2.3913 -1.7491 17 1 10.1581 -1.8864 0.3773 18 1 8.1851 -3.2944 0.3036 19 7 4.2352 0.2154 0.0016 20 6 3.4547 1.2926 0.0016 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 0.2238 2.3081 -0.0016 25 1 1.2934 4.5050 0.0000 26 1 3.7276 4.7386 -0.0088 27 1 9.2733 0.6795 -0.2271 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260069871.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:15 Heat of formation + Delta-G solvation = 50.156549 kcal Electronic energy + Delta-G solvation = -15279.557198 eV Core-core repulsion = 12617.642373 eV Total energy + Delta-G solvation = -2661.914825 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.075 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.03219 -38.51724 -35.88234 -34.08604 -33.30565 -30.35779 -29.31117 -27.32349 -26.36452 -24.31011 -22.78790 -21.00971 -18.91328 -18.15493 -16.67588 -16.19326 -15.57298 -15.33855 -15.19319 -14.13927 -13.88059 -13.77625 -13.08444 -12.33309 -11.79628 -11.71443 -11.54687 -11.44472 -11.24015 -10.91835 -10.76060 -10.58560 -10.36034 -10.10585 -9.75882 -9.57328 -8.28078 -7.60178 -7.25399 -6.96034 -4.94440 1.14493 1.78919 2.85892 2.93164 2.99446 3.07119 3.69101 3.69412 3.76119 4.50258 5.13134 5.24652 5.35068 5.37797 5.48709 5.50276 5.53241 5.67884 5.84219 6.05969 6.32317 6.56103 6.74055 6.75761 6.94609 7.10625 7.38103 7.78486 7.92061 8.11739 8.21719 8.85605 9.83683 10.24186 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.036419 B = 0.007896 C = 0.006517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.652564 B = 3545.397615 C = 4295.741612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.296 6.296 3 C 0.109 3.891 4 C -0.182 4.182 5 C -0.153 4.153 6 C -0.056 4.056 7 C -0.092 4.092 8 N -0.161 5.161 9 N -0.222 5.222 10 C 0.303 3.697 11 C -0.358 4.358 12 H 0.104 0.896 13 C 0.056 3.944 14 N -0.697 5.697 15 Si 0.931 3.069 16 H -0.264 1.264 17 H -0.270 1.270 18 H -0.255 1.255 19 N -0.534 5.534 20 C 0.170 3.830 21 H 0.050 0.950 22 H 0.050 0.950 23 H 0.093 0.907 24 H 0.120 0.880 25 H 0.116 0.884 26 H 0.124 0.876 27 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.687 0.527 -0.162 7.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.208 6.208 3 C 0.061 3.939 4 C -0.205 4.205 5 C -0.175 4.175 6 C -0.078 4.078 7 C -0.224 4.224 8 N -0.030 5.030 9 N -0.092 5.092 10 C 0.069 3.931 11 C -0.394 4.394 12 H 0.122 0.878 13 C -0.174 4.174 14 N -0.317 5.317 15 Si 0.753 3.247 16 H -0.189 1.189 17 H -0.195 1.195 18 H -0.179 1.179 19 N -0.260 5.260 20 C 0.021 3.979 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.112 0.888 24 H 0.138 0.862 25 H 0.134 0.866 26 H 0.142 0.858 27 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.366 0.317 -0.165 6.376 hybrid contribution -0.774 -0.400 -0.106 0.877 sum -7.139 -0.083 -0.272 7.145 Atomic orbital electron populations 1.22981 0.79913 1.03219 1.00722 1.86153 1.19716 1.26603 1.88346 1.18606 0.89705 0.84372 1.01216 1.20812 0.98959 0.92021 1.08700 1.20351 0.94095 0.96064 1.06983 1.20536 0.92474 0.96525 0.98309 1.21117 0.94237 0.93112 1.13892 1.74453 1.02628 1.23064 1.02822 1.74742 1.27567 0.95315 1.11542 1.21186 0.87222 0.92909 0.91828 1.19551 0.90033 0.93247 1.36616 0.87760 1.26334 0.98983 0.98363 0.93684 1.70022 1.13761 1.23566 1.24367 0.85908 0.78652 0.80440 0.79697 1.18889 1.19504 1.17872 1.69670 1.04874 1.28958 1.22475 1.19844 0.91591 0.90666 0.95800 0.93190 0.93189 0.88809 0.86177 0.86567 0.85836 0.90087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 15 2 O -0.30 -5.94 10.36 -18.76 -0.19 -6.14 15 3 C 0.11 2.34 6.75 -38.58 -0.26 2.08 15 4 C -0.18 -3.19 9.01 -39.48 -0.36 -3.55 15 5 C -0.15 -2.61 9.95 -39.56 -0.39 -3.01 15 6 C -0.06 -1.12 10.05 -39.22 -0.39 -1.51 15 7 C -0.09 -2.28 6.82 -82.87 -0.56 -2.84 15 8 N -0.16 -4.36 11.72 33.22 0.39 -3.97 15 9 N -0.22 -6.40 8.97 30.79 0.28 -6.12 15 10 C 0.30 8.72 7.39 -157.87 -1.17 7.56 15 11 C -0.36 -9.56 9.34 -37.78 -0.35 -9.91 15 12 H 0.10 2.64 7.86 -52.48 -0.41 2.23 15 13 C 0.06 1.35 5.49 -17.34 -0.10 1.25 15 14 N -0.70 -17.64 11.42 55.56 0.63 -17.00 15 15 Si 0.93 17.48 29.57 -169.99 -5.03 12.45 15 16 H -0.26 -4.89 7.11 56.52 0.40 -4.49 15 17 H -0.27 -4.89 7.11 56.52 0.40 -4.48 15 18 H -0.26 -4.72 7.11 56.52 0.40 -4.31 15 19 N -0.53 -15.00 10.31 -9.28 -0.10 -15.10 15 20 C 0.17 4.36 6.77 -82.79 -0.56 3.79 15 21 H 0.05 0.58 7.66 -51.93 -0.40 0.18 15 22 H 0.05 0.58 7.66 -51.93 -0.40 0.18 15 23 H 0.09 1.01 8.14 -51.93 -0.42 0.59 15 24 H 0.12 1.65 6.24 -52.49 -0.33 1.33 15 25 H 0.12 1.55 8.06 -52.48 -0.42 1.12 15 26 H 0.12 2.15 8.06 -52.49 -0.42 1.73 15 27 H 0.29 6.40 8.29 -40.82 -0.34 6.06 15 LS Contribution 247.01 15.07 3.72 3.72 Total: -1.00 -31.43 247.01 -5.38 -36.81 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -1.94 Total: 0.14 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -3.15 Total: -4.79 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: 1.20 Total: -42.20 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -0.19 Total: -6.14 kcal Atomic # 14 Polarization: 17.48 SS G_CDS: -5.03 Total: 12.45 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -31.43 -5.38 -36.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260069871.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.967 kcal (2) G-P(sol) polarization free energy of solvation -31.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds