Wall clock time and date at job start Mon Mar 30 2020 03:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35686 * 116.99736 * 2 1 4 4 C 1.37871 * 120.39555 * 359.97438 * 3 2 1 5 5 C 1.38883 * 121.39527 * 179.97438 * 4 3 2 6 6 C 1.37637 * 121.70176 * 0.27470 * 5 4 3 7 7 C 1.39781 * 119.65619 * 359.45505 * 6 5 4 8 8 N 1.34109 * 122.38170 * 180.23276 * 7 6 5 9 9 N 1.28916 * 119.60196 * 180.30225 * 8 7 6 10 10 C 1.34238 * 122.56898 * 359.97438 * 9 8 7 11 11 C 1.41106 * 119.01120 * 180.02562 * 10 9 8 12 12 H 1.08004 * 119.99966 * 173.60029 * 11 10 9 13 13 C 1.40152 * 120.00045 * 353.59573 * 11 10 9 14 14 N 1.30652 * 120.00011 * 6.34129 * 13 11 10 15 15 Si 1.86802 * 120.00020 * 186.33271 * 13 11 10 16 16 H 1.48493 * 109.46993 * 94.98736 * 15 13 11 17 17 H 1.48500 * 109.47131 * 214.99006 * 15 13 11 18 18 H 1.48503 * 109.47223 * 334.98920 * 15 13 11 19 19 N 1.33374 * 121.97834 * 0.02562 * 10 9 8 20 20 C 1.33019 * 118.79672 * 359.97438 * 19 10 9 21 21 H 1.09001 * 109.47019 * 300.00156 * 1 2 3 22 22 H 1.08995 * 109.47566 * 60.00220 * 1 2 3 23 23 H 1.09000 * 109.47483 * 180.02562 * 1 2 3 24 24 H 1.08000 * 119.30129 * 359.95841 * 4 3 2 25 25 H 1.08007 * 119.14366 * 180.02562 * 5 4 3 26 26 H 1.08002 * 120.16889 * 179.70559 * 6 5 4 27 27 H 0.96999 * 120.00101 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 1.3020 2.3704 -0.0005 5 6 1.9107 3.6187 0.0000 6 6 3.2803 3.7555 -0.0046 7 6 4.0893 2.6156 0.0017 8 7 5.4285 2.6853 0.0023 9 7 6.1228 1.5990 0.0023 10 6 5.5587 0.3809 0.0022 11 6 6.3908 -0.7586 0.0028 12 1 5.9586 -1.7429 0.1069 13 6 7.7783 -0.6132 -0.1320 14 7 8.3131 0.5788 -0.1335 15 14 8.8629 -2.1237 -0.3091 16 1 9.1075 -2.3913 -1.7491 17 1 10.1581 -1.8864 0.3773 18 1 8.1851 -3.2944 0.3036 19 7 4.2352 0.2154 0.0016 20 6 3.4547 1.2926 0.0016 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 0.2238 2.3081 -0.0016 25 1 1.2934 4.5050 0.0000 26 1 3.7276 4.7386 -0.0088 27 1 9.2733 0.6795 -0.2271 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260069871.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:15 Heat of formation + Delta-G solvation = 27.153493 kcal Electronic energy + Delta-G solvation = -15280.554686 eV Core-core repulsion = 12617.642373 eV Total energy + Delta-G solvation = -2662.912313 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.075 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.81728 -40.09330 -37.50005 -35.91248 -35.19139 -32.14927 -30.92315 -28.79379 -27.92582 -26.11005 -24.58915 -22.63588 -20.67526 -19.84091 -18.43781 -17.88689 -17.11941 -16.88166 -16.72289 -15.71382 -15.66003 -15.29859 -14.60202 -13.72180 -13.40718 -13.28712 -13.21210 -12.95636 -12.88538 -12.47682 -12.44520 -12.25124 -11.99774 -11.66980 -11.54806 -11.27541 -10.06256 -9.58165 -8.88178 -8.74300 -6.88571 -0.61305 0.03360 1.18621 1.37340 1.44825 1.56893 2.10599 2.13916 2.32495 2.74980 3.46376 3.55309 3.56634 3.80493 4.03641 4.27621 4.32389 4.45822 4.49304 4.66904 4.75382 4.94076 4.96541 5.19443 5.33758 5.52804 5.80514 5.87278 6.19015 6.29481 6.53322 6.94277 8.10876 8.27605 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.036419 B = 0.007896 C = 0.006517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.652564 B = 3545.397615 C = 4295.741612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.330 6.330 3 C 0.090 3.910 4 C -0.156 4.156 5 C -0.115 4.115 6 C -0.079 4.079 7 C -0.104 4.104 8 N -0.186 5.186 9 N -0.264 5.264 10 C 0.273 3.727 11 C -0.397 4.397 12 H 0.103 0.897 13 C 0.017 3.983 14 N -0.738 5.738 15 Si 1.014 2.986 16 H -0.257 1.257 17 H -0.255 1.255 18 H -0.251 1.251 19 N -0.563 5.563 20 C 0.133 3.867 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.113 0.887 24 H 0.173 0.827 25 H 0.175 0.825 26 H 0.147 0.853 27 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.464 1.311 -0.277 10.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.243 6.243 3 C 0.042 3.958 4 C -0.179 4.179 5 C -0.136 4.136 6 C -0.101 4.101 7 C -0.238 4.238 8 N -0.052 5.052 9 N -0.132 5.132 10 C 0.038 3.962 11 C -0.433 4.433 12 H 0.121 0.879 13 C -0.208 4.208 14 N -0.359 5.359 15 Si 0.831 3.169 16 H -0.181 1.181 17 H -0.179 1.179 18 H -0.175 1.175 19 N -0.290 5.290 20 C -0.015 4.015 21 H 0.090 0.910 22 H 0.090 0.910 23 H 0.132 0.868 24 H 0.191 0.809 25 H 0.193 0.807 26 H 0.165 0.835 27 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.150 1.143 -0.276 9.226 hybrid contribution -0.380 -0.448 -0.060 0.590 sum -9.531 0.696 -0.336 9.562 Atomic orbital electron populations 1.23419 0.76255 1.05485 1.02695 1.86102 1.23473 1.26404 1.88352 1.18763 0.88414 0.86455 1.02179 1.21467 1.01364 0.90530 1.04562 1.21075 0.93207 0.97993 1.01334 1.20933 0.93643 0.95919 0.99639 1.21746 0.93866 0.94746 1.13447 1.74258 1.04320 1.23037 1.03565 1.74663 1.28339 0.95600 1.14587 1.21646 0.88019 0.93661 0.92893 1.19854 0.91638 0.92711 1.39113 0.87949 1.27376 0.99297 1.01886 0.92285 1.70084 1.14703 1.26032 1.25120 0.84730 0.76574 0.75663 0.79947 1.18120 1.17869 1.17466 1.69648 1.05029 1.30611 1.23678 1.20618 0.93813 0.90629 0.96458 0.91001 0.90999 0.86825 0.80950 0.80715 0.83488 0.89069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 15 2 O -0.33 -12.78 10.36 -90.05 -0.93 -13.72 15 3 C 0.09 3.72 6.75 22.92 0.15 3.87 15 4 C -0.16 -4.68 9.01 22.34 0.20 -4.48 15 5 C -0.11 -3.26 9.95 22.28 0.22 -3.04 15 6 C -0.08 -2.96 10.05 22.50 0.23 -2.73 15 7 C -0.10 -5.23 6.82 41.39 0.28 -4.94 15 8 N -0.19 -10.58 11.72 -48.81 -0.57 -11.15 15 9 N -0.26 -16.29 8.97 -56.49 -0.51 -16.79 15 10 C 0.27 16.85 7.39 134.81 1.00 17.85 15 11 C -0.40 -22.62 9.34 23.44 0.22 -22.40 15 12 H 0.10 5.57 7.86 -2.91 -0.02 5.55 15 13 C 0.02 0.85 5.49 85.33 0.47 1.31 15 14 N -0.74 -39.44 11.42 21.86 0.25 -39.19 15 15 Si 1.01 36.83 29.57 68.60 2.03 38.86 15 16 H -0.26 -8.94 7.11 99.48 0.71 -8.24 15 17 H -0.25 -8.52 7.11 99.48 0.71 -7.81 15 18 H -0.25 -8.84 7.11 99.48 0.71 -8.13 15 19 N -0.56 -33.42 10.31 -183.28 -1.89 -35.31 15 20 C 0.13 6.96 6.77 41.92 0.28 7.24 15 21 H 0.07 1.30 7.66 -2.39 -0.02 1.29 15 22 H 0.07 1.30 7.66 -2.39 -0.02 1.29 15 23 H 0.11 2.08 8.14 -2.39 -0.02 2.06 15 24 H 0.17 3.40 6.24 -2.91 -0.02 3.38 15 25 H 0.18 3.12 8.06 -2.91 -0.02 3.09 15 26 H 0.15 4.72 8.06 -2.91 -0.02 4.70 15 27 H 0.30 13.87 8.29 -92.71 -0.77 13.10 15 Total: -1.00 -76.64 247.01 3.75 -72.89 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 1.21 Total: 10.27 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: 4.17 Total: -5.86 kcal Atomic # 7 Polarization: -99.73 SS G_CDS: -2.72 Total: -102.45 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -0.93 Total: -13.72 kcal Atomic # 14 Polarization: 36.83 SS G_CDS: 2.03 Total: 38.86 kcal Total: -76.64 3.75 -72.89 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260069871.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.046 kcal (2) G-P(sol) polarization free energy of solvation -76.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds