Wall clock time and date at job start Mon Mar 30 2020 02:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31219 * 1 3 3 Si 1.86800 * 120.00207 * 2 1 4 4 H 1.48496 * 109.47161 * 269.99772 * 3 2 1 5 5 H 1.48505 * 109.47095 * 30.00238 * 3 2 1 6 6 H 1.48495 * 109.47014 * 149.99751 * 3 2 1 7 7 C 1.39079 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00400 * 180.02562 * 7 2 1 9 9 N 1.37322 * 120.00060 * 359.97438 * 7 2 1 10 10 N 1.40310 * 126.94440 * 17.38396 * 9 7 2 11 11 N 1.28673 * 108.34844 * 179.97438 * 10 9 7 12 12 C 1.33096 * 110.33323 * 359.72097 * 11 10 9 13 13 C 1.36385 * 108.85651 * 0.45232 * 12 11 10 14 14 C 1.47855 * 126.82375 * 179.82791 * 13 12 11 15 15 C 1.39626 * 120.11622 * 202.42374 * 14 13 12 16 16 C 1.37963 * 119.96401 * 179.97438 * 15 14 13 17 17 C 1.38302 * 120.20307 * 0.02562 * 16 15 14 18 18 C 1.38831 * 120.23540 * 359.97438 * 17 16 15 19 19 O 1.35907 * 119.98120 * 180.02562 * 18 17 16 20 20 C 1.38480 * 120.03517 * 0.02562 * 18 17 16 21 21 H 0.97003 * 119.99803 * 359.97438 * 1 2 3 22 22 H 1.08000 * 125.57666 * 180.27401 * 12 11 10 23 23 H 1.07997 * 120.02069 * 359.96383 * 15 14 13 24 24 H 1.07995 * 119.89957 * 180.02562 * 16 15 14 25 25 H 1.07997 * 119.87747 * 179.97438 * 17 16 15 26 26 H 0.96700 * 114.00285 * 269.98038 * 19 18 17 27 27 H 1.07995 * 120.10088 * 180.27712 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3122 0.0000 0.0000 3 14 2.2462 1.6177 0.0000 4 1 2.4938 2.0463 -1.4000 5 1 1.4437 2.6527 0.7001 6 1 3.5437 1.4401 0.7001 7 6 2.0076 -1.2045 -0.0005 8 1 3.0876 -1.2046 -0.0001 9 7 1.3209 -2.3937 -0.0005 10 7 -0.0277 -2.5889 -0.3351 11 7 -0.2981 -3.8409 -0.2132 12 6 0.7830 -4.5117 0.1775 13 6 1.8162 -3.6341 0.3267 14 6 3.1964 -3.9538 0.7500 15 6 4.0071 -2.9610 1.3038 16 6 5.2942 -3.2629 1.6981 17 6 5.7853 -4.5469 1.5463 18 6 4.9865 -5.5405 0.9967 19 8 5.4741 -6.8006 0.8504 20 6 3.6931 -5.2483 0.5975 21 1 -0.4850 0.8401 0.0004 22 1 0.8331 -5.5765 0.3512 23 1 3.6269 -1.9573 1.4232 24 1 5.9202 -2.4943 2.1267 25 1 6.7938 -4.7773 1.8565 26 1 5.9108 -6.9573 0.0019 27 1 3.0692 -6.0214 0.1740 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260391208.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:56 Heat of formation + Delta-G solvation = 46.281724 kcal Electronic energy + Delta-G solvation = -15262.623127 eV Core-core repulsion = 12600.540277 eV Total energy + Delta-G solvation = -2662.082850 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.075 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.15318 -40.31989 -37.56588 -36.15538 -33.75134 -32.64040 -30.59717 -29.48066 -27.79872 -24.29206 -23.79287 -22.54319 -21.45089 -20.05005 -18.81375 -17.45530 -17.13930 -16.39017 -16.31708 -16.14100 -15.84779 -14.97275 -14.74440 -14.41732 -13.83550 -13.47095 -13.20530 -13.09803 -12.86193 -12.38887 -12.07292 -11.91914 -11.82173 -11.30316 -11.23523 -10.85046 -10.23559 -9.61474 -8.93510 -8.78873 -6.70380 0.07178 0.42096 1.17943 1.35146 1.56233 1.63262 2.01063 2.14717 2.54864 2.75590 2.98701 3.39004 3.94634 4.06372 4.27049 4.36394 4.44774 4.59697 4.72639 4.84363 4.94205 5.05785 5.16254 5.48906 5.54071 5.71962 5.86453 5.89208 5.97911 6.47386 6.93979 7.08355 8.09494 8.21488 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.027265 B = 0.009107 C = 0.006947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.702989 B = 3073.789281 C = 4029.434866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.001 3.999 3 Si 1.023 2.977 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.232 1.232 7 C -0.327 4.327 8 H 0.152 0.848 9 N -0.146 5.146 10 N -0.161 5.161 11 N -0.359 5.359 12 C -0.083 4.083 13 C -0.075 4.075 14 C 0.017 3.983 15 C -0.152 4.152 16 C -0.090 4.090 17 C -0.152 4.152 18 C 0.111 3.889 19 O -0.505 6.505 20 C -0.149 4.149 21 H 0.292 0.708 22 H 0.184 0.816 23 H 0.128 0.872 24 H 0.158 0.842 25 H 0.156 0.844 26 H 0.410 0.590 27 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.208 -2.270 2.175 15.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.215 4.215 3 Si 0.839 3.161 4 H -0.184 1.184 5 H -0.193 1.193 6 H -0.155 1.155 7 C -0.464 4.464 8 H 0.169 0.831 9 N 0.082 4.918 10 N -0.136 5.136 11 N -0.213 5.213 12 C -0.253 4.253 13 C -0.207 4.207 14 C 0.014 3.986 15 C -0.171 4.171 16 C -0.108 4.108 17 C -0.171 4.171 18 C 0.066 3.934 19 O -0.318 6.318 20 C -0.169 4.169 21 H 0.102 0.898 22 H 0.201 0.799 23 H 0.146 0.854 24 H 0.175 0.825 25 H 0.174 0.826 26 H 0.269 0.731 27 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 13.249 -1.609 2.220 13.529 hybrid contribution 0.526 0.127 -0.333 0.635 sum 13.774 -1.482 1.887 13.982 Atomic orbital electron populations 1.70229 1.09015 1.31141 1.32558 1.27229 0.96513 1.04938 0.92822 0.84549 0.78849 0.72762 0.79987 1.18374 1.19274 1.15472 1.21192 0.93921 0.80583 1.50727 0.83068 1.47097 1.08559 1.06064 1.30055 1.82359 0.93120 1.08138 1.29964 1.73770 1.27211 1.01556 1.18756 1.22930 0.88959 1.00770 1.12634 1.20387 0.96798 0.86553 1.16950 1.17785 0.88801 0.94373 0.97624 1.21741 0.95273 1.00012 1.00108 1.21222 0.94288 0.97166 0.98095 1.21680 1.01276 0.92093 1.02053 1.18271 0.91374 0.84755 0.98987 1.84759 1.77450 1.26282 1.43273 1.21407 0.96837 0.95416 1.03203 0.89751 0.79901 0.85430 0.82479 0.82643 0.73119 0.85242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -43.68 12.06 21.67 0.26 -43.42 15 2 C 0.00 0.06 5.49 84.99 0.47 0.53 15 3 Si 1.02 34.66 29.55 68.60 2.03 36.69 15 4 H -0.26 -8.53 7.11 99.48 0.71 -7.82 15 5 H -0.27 -8.90 7.11 99.48 0.71 -8.19 15 6 H -0.23 -6.88 7.11 99.48 0.71 -6.18 15 7 C -0.33 -16.53 8.81 84.04 0.74 -15.79 15 8 H 0.15 6.66 5.59 -2.91 -0.02 6.64 15 9 N -0.15 -8.19 3.76 -179.70 -0.68 -8.87 15 10 N -0.16 -9.97 11.90 37.02 0.44 -9.53 15 11 N -0.36 -20.83 12.29 -58.01 -0.71 -21.55 15 12 C -0.08 -4.16 11.30 84.07 0.95 -3.21 15 13 C -0.07 -3.71 6.75 40.37 0.27 -3.44 15 14 C 0.02 0.67 5.84 -20.10 -0.12 0.55 15 15 C -0.15 -5.37 8.72 22.54 0.20 -5.18 15 16 C -0.09 -2.36 10.03 22.22 0.22 -2.13 15 17 C -0.15 -3.64 9.98 22.43 0.22 -3.42 15 18 C 0.11 3.01 6.70 22.47 0.15 3.16 15 19 O -0.50 -11.20 13.50 -92.50 -1.25 -12.45 15 20 C -0.15 -4.96 9.52 22.63 0.22 -4.74 15 21 H 0.29 14.28 8.30 -92.71 -0.77 13.51 15 22 H 0.18 7.58 7.75 -2.91 -0.02 7.55 15 23 H 0.13 4.82 5.32 -2.91 -0.02 4.80 15 24 H 0.16 3.01 8.06 -2.91 -0.02 2.98 15 25 H 0.16 2.68 8.06 -2.91 -0.02 2.66 15 26 H 0.41 4.85 9.06 -74.06 -0.67 4.18 15 27 H 0.13 4.14 7.49 -2.91 -0.02 4.12 15 Total: -1.00 -72.52 247.15 3.97 -68.55 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: 0.56 Total: 24.26 kcal Atomic # 6 Polarization: -37.00 SS G_CDS: 3.32 Total: -33.68 kcal Atomic # 7 Polarization: -82.68 SS G_CDS: -0.69 Total: -83.37 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -1.25 Total: -12.45 kcal Atomic # 14 Polarization: 34.66 SS G_CDS: 2.03 Total: 36.69 kcal Total: -72.52 3.97 -68.55 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260391208.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.833 kcal (2) G-P(sol) polarization free energy of solvation -72.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds