Wall clock time and date at job start Mon Mar 30 2020 02:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30866 * 1 3 3 Si 1.86799 * 120.00035 * 2 1 4 4 H 1.48501 * 109.46984 * 274.97796 * 3 2 1 5 5 H 1.48498 * 109.47487 * 34.97595 * 3 2 1 6 6 H 1.48495 * 109.47012 * 154.98225 * 3 2 1 7 7 C 1.39878 * 119.99671 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00248 * 186.03023 * 7 2 1 9 9 C 1.41227 * 120.00645 * 6.03085 * 7 2 1 10 10 N 1.34745 * 125.69366 * 354.24371 * 9 7 2 11 11 C 1.30359 * 109.87843 * 180.02562 * 10 9 7 12 12 N 1.35917 * 108.42985 * 0.02562 * 11 10 9 13 13 C 1.39895 * 126.74411 * 180.02562 * 12 11 10 14 14 C 1.38865 * 120.10243 * 0.02562 * 13 12 11 15 15 C 1.38106 * 119.97650 * 179.97438 * 14 13 12 16 16 C 1.38357 * 120.18886 * 0.02727 * 15 14 13 17 17 C 1.38199 * 120.20601 * 359.97438 * 16 15 14 18 18 C 1.38596 * 120.02293 * 359.97438 * 17 16 15 19 19 O 1.35901 * 120.09654 * 180.02562 * 18 17 16 20 20 N 1.32861 * 125.70613 * 174.57120 * 9 7 2 21 21 H 0.96995 * 119.99409 * 0.02562 * 1 2 3 22 22 H 1.08001 * 125.78676 * 179.97438 * 11 10 9 23 23 H 1.07996 * 120.01309 * 359.95743 * 14 13 12 24 24 H 1.08005 * 119.90994 * 180.02562 * 15 14 13 25 25 H 1.08003 * 119.89835 * 180.27143 * 16 15 14 26 26 H 1.08005 * 119.99151 * 180.02562 * 17 16 15 27 27 H 0.96698 * 113.99855 * 89.99714 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3849 2.1071 -1.3948 5 1 1.4967 2.6201 0.8025 6 1 3.5888 1.4120 0.5921 7 6 2.0080 -1.2114 0.0005 8 1 3.0835 -1.2141 0.0988 9 6 1.3078 -2.4312 -0.1274 10 7 -0.0324 -2.5701 -0.1469 11 6 -0.3457 -3.8288 -0.2768 12 7 0.8027 -4.5526 -0.3456 13 6 0.9102 -5.9402 -0.4873 14 6 -0.2341 -6.7222 -0.5733 15 6 -0.1250 -8.0918 -0.7136 16 6 1.1222 -8.6883 -0.7684 17 6 2.2660 -7.9174 -0.6835 18 6 2.1666 -6.5421 -0.5436 19 8 3.2904 -5.7826 -0.4605 20 7 1.8602 -3.6340 -0.2425 21 1 -0.4849 0.8400 -0.0004 22 1 -1.3479 -4.2288 -0.3213 23 1 -1.2090 -6.2596 -0.5301 24 1 -1.0157 -8.6989 -0.7808 25 1 1.2021 -9.7593 -0.8826 26 1 3.2378 -8.3867 -0.7270 27 1 3.6200 -5.4731 -1.3153 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260393977.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:27 Heat of formation + Delta-G solvation = 76.340267 kcal Electronic energy + Delta-G solvation = -15177.037863 eV Core-core repulsion = 12516.258449 eV Total energy + Delta-G solvation = -2660.779414 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.075 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.43708 -38.91326 -36.09044 -33.91798 -32.50849 -29.97602 -29.48980 -28.44218 -25.93364 -23.05483 -22.10419 -20.26601 -19.97449 -17.91242 -17.35688 -16.32135 -15.31835 -15.17665 -14.83714 -14.38045 -14.12478 -13.62062 -13.23012 -12.86671 -12.12031 -11.92530 -11.49353 -11.27057 -11.23110 -10.62683 -10.53079 -10.22598 -10.00977 -9.69595 -9.09257 -8.55221 -8.23722 -8.19791 -7.41645 -6.56565 -4.53065 1.37619 1.49785 2.97466 3.13228 3.18409 3.22476 3.60451 4.01176 4.06484 4.37605 4.68356 5.02376 5.13932 5.34164 5.52808 5.54886 5.61469 5.86836 6.05505 6.30608 6.49046 6.65517 6.72199 6.95703 7.13841 7.28017 8.04292 8.14070 8.25482 8.41727 8.75528 8.89760 9.92948 10.37700 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.056575 B = 0.006492 C = 0.005842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.803397 B = 4312.296182 C = 4791.787414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.078 3.922 3 Si 0.919 3.081 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.428 4.428 8 H 0.090 0.910 9 C 0.346 3.654 10 N -0.478 5.478 11 C 0.214 3.786 12 N -0.373 5.373 13 C 0.180 3.820 14 C -0.159 4.159 15 C -0.098 4.098 16 C -0.149 4.149 17 C -0.122 4.122 18 C 0.085 3.915 19 O -0.468 6.468 20 N -0.420 5.420 21 H 0.275 0.725 22 H 0.190 0.810 23 H 0.127 0.873 24 H 0.124 0.876 25 H 0.121 0.879 26 H 0.127 0.873 27 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.742 -10.730 -2.846 11.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.379 5.379 2 C -0.146 4.146 3 Si 0.743 3.257 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.470 4.470 8 H 0.108 0.892 9 C 0.090 3.910 10 N -0.202 5.202 11 C -0.082 4.082 12 N -0.159 5.159 13 C 0.079 3.921 14 C -0.182 4.182 15 C -0.117 4.117 16 C -0.169 4.169 17 C -0.141 4.141 18 C 0.036 3.964 19 O -0.276 6.276 20 N -0.254 5.254 21 H 0.086 0.914 22 H 0.206 0.794 23 H 0.144 0.856 24 H 0.142 0.858 25 H 0.139 0.861 26 H 0.145 0.855 27 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -0.492 -10.395 -2.192 10.635 hybrid contribution -0.001 0.611 -0.508 0.794 sum -0.493 -9.784 -2.699 10.162 Atomic orbital electron populations 1.70037 1.07077 1.28244 1.32506 1.25924 0.94927 1.01055 0.92661 0.86132 0.80350 0.80268 0.78923 1.19539 1.20207 1.18481 1.18403 0.94571 0.86694 1.47306 0.89188 1.21181 0.86110 0.92453 0.91214 1.71223 1.15946 1.13054 1.19930 1.26338 0.93025 0.88910 0.99970 1.47935 1.06535 1.03720 1.57685 1.18187 0.94159 0.81478 0.98231 1.20674 0.96701 0.93887 1.06901 1.20816 0.97596 0.93561 0.99738 1.20829 0.92030 0.99472 1.04536 1.21272 0.99275 0.92552 1.01015 1.18136 0.85331 0.89376 1.03525 1.84894 1.39403 1.69390 1.33945 1.79126 1.04783 0.97567 1.43934 0.91443 0.79367 0.85556 0.85768 0.86084 0.85541 0.76197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -20.56 11.92 55.54 0.66 -19.90 15 2 C 0.08 2.06 5.49 -17.35 -0.10 1.96 15 3 Si 0.92 19.33 29.56 -169.99 -5.03 14.30 15 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 15 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 15 6 H -0.26 -5.41 7.11 56.52 0.40 -5.01 15 7 C -0.43 -12.19 9.49 -37.83 -0.36 -12.55 15 8 H 0.09 2.47 7.85 -52.49 -0.41 2.06 15 9 C 0.35 10.06 7.60 -157.82 -1.20 8.86 15 10 N -0.48 -13.29 9.36 -13.68 -0.13 -13.42 15 11 C 0.21 4.98 11.98 -89.69 -1.07 3.90 15 12 N -0.37 -8.83 3.84 -11.55 -0.04 -8.87 15 13 C 0.18 3.53 6.71 -83.50 -0.56 2.97 15 14 C -0.16 -2.47 9.47 -39.40 -0.37 -2.84 15 15 C -0.10 -1.25 10.04 -39.59 -0.40 -1.65 15 16 C -0.15 -1.86 10.04 -39.55 -0.40 -2.26 15 17 C -0.12 -1.77 9.98 -39.46 -0.39 -2.16 15 18 C 0.08 1.57 6.72 -39.01 -0.26 1.30 15 19 O -0.47 -9.24 11.62 -19.43 -0.23 -9.47 15 20 N -0.42 -11.50 10.90 30.83 0.34 -11.17 15 21 H 0.27 6.77 8.30 -40.82 -0.34 6.43 15 22 H 0.19 3.35 7.10 -52.49 -0.37 2.98 15 23 H 0.13 1.71 6.80 -52.49 -0.36 1.35 15 24 H 0.12 1.18 8.06 -52.48 -0.42 0.76 15 25 H 0.12 1.14 8.06 -52.48 -0.42 0.72 15 26 H 0.13 1.55 8.06 -52.48 -0.42 1.13 15 27 H 0.38 6.36 9.06 45.56 0.41 6.78 15 LS Contribution 249.31 15.07 3.76 3.76 Total: -1.00 -33.54 249.31 -6.91 -40.45 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -1.13 Total: 6.78 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -5.11 Total: -2.46 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.83 Total: -53.36 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: -0.23 Total: -9.47 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -33.54 -6.91 -40.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260393977.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.788 kcal (2) G-P(sol) polarization free energy of solvation -33.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds