Wall clock time and date at job start Mon Mar 30 2020 02:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30866 * 1 3 3 Si 1.86799 * 120.00035 * 2 1 4 4 H 1.48501 * 109.46984 * 274.97796 * 3 2 1 5 5 H 1.48498 * 109.47487 * 34.97595 * 3 2 1 6 6 H 1.48495 * 109.47012 * 154.98225 * 3 2 1 7 7 C 1.39878 * 119.99671 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00248 * 186.03023 * 7 2 1 9 9 C 1.41227 * 120.00645 * 6.03085 * 7 2 1 10 10 N 1.34745 * 125.69366 * 354.24371 * 9 7 2 11 11 C 1.30359 * 109.87843 * 180.02562 * 10 9 7 12 12 N 1.35917 * 108.42985 * 0.02562 * 11 10 9 13 13 C 1.39895 * 126.74411 * 180.02562 * 12 11 10 14 14 C 1.38865 * 120.10243 * 0.02562 * 13 12 11 15 15 C 1.38106 * 119.97650 * 179.97438 * 14 13 12 16 16 C 1.38357 * 120.18886 * 0.02727 * 15 14 13 17 17 C 1.38199 * 120.20601 * 359.97438 * 16 15 14 18 18 C 1.38596 * 120.02293 * 359.97438 * 17 16 15 19 19 O 1.35901 * 120.09654 * 180.02562 * 18 17 16 20 20 N 1.32861 * 125.70613 * 174.57120 * 9 7 2 21 21 H 0.96995 * 119.99409 * 0.02562 * 1 2 3 22 22 H 1.08001 * 125.78676 * 179.97438 * 11 10 9 23 23 H 1.07996 * 120.01309 * 359.95743 * 14 13 12 24 24 H 1.08005 * 119.90994 * 180.02562 * 15 14 13 25 25 H 1.08003 * 119.89835 * 180.27143 * 16 15 14 26 26 H 1.08005 * 119.99151 * 180.02562 * 17 16 15 27 27 H 0.96698 * 113.99855 * 89.99714 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3849 2.1071 -1.3948 5 1 1.4967 2.6201 0.8025 6 1 3.5888 1.4120 0.5921 7 6 2.0080 -1.2114 0.0005 8 1 3.0835 -1.2141 0.0988 9 6 1.3078 -2.4312 -0.1274 10 7 -0.0324 -2.5701 -0.1469 11 6 -0.3457 -3.8288 -0.2768 12 7 0.8027 -4.5526 -0.3456 13 6 0.9102 -5.9402 -0.4873 14 6 -0.2341 -6.7222 -0.5733 15 6 -0.1250 -8.0918 -0.7136 16 6 1.1222 -8.6883 -0.7684 17 6 2.2660 -7.9174 -0.6835 18 6 2.1666 -6.5421 -0.5436 19 8 3.2904 -5.7826 -0.4605 20 7 1.8602 -3.6340 -0.2425 21 1 -0.4849 0.8400 -0.0004 22 1 -1.3479 -4.2288 -0.3213 23 1 -1.2090 -6.2596 -0.5301 24 1 -1.0157 -8.6989 -0.7808 25 1 1.2021 -9.7593 -0.8826 26 1 3.2378 -8.3867 -0.7270 27 1 3.6200 -5.4731 -1.3153 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260393977.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:27 Heat of formation + Delta-G solvation = 53.126726 kcal Electronic energy + Delta-G solvation = -15178.044478 eV Core-core repulsion = 12516.258449 eV Total energy + Delta-G solvation = -2661.786029 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.075 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.19955 -40.32093 -37.46675 -35.75323 -34.18947 -31.70093 -30.98851 -29.97482 -27.81081 -24.48440 -23.52805 -21.86790 -21.80469 -19.36888 -19.04781 -17.98165 -17.03757 -16.59959 -16.24869 -15.91520 -15.63800 -15.16366 -14.70661 -14.57926 -13.46395 -13.30670 -13.01951 -12.92337 -12.59854 -12.47818 -12.31447 -11.92835 -11.65447 -11.21214 -10.87360 -10.19980 -10.17730 -9.74817 -8.97366 -8.48754 -6.58632 0.01936 0.31392 1.31063 1.41115 1.57177 1.60274 1.99065 2.27754 2.42188 2.80501 3.39660 3.48109 3.74252 3.82579 4.11714 4.33035 4.49169 4.54002 4.76094 4.98510 5.04716 5.29707 5.40663 5.48820 5.52755 5.88496 6.12999 6.19932 6.56981 6.76472 6.87760 6.96135 7.99035 8.48276 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.056575 B = 0.006492 C = 0.005842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.803397 B = 4312.296182 C = 4791.787414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.035 3.965 3 Si 1.001 2.999 4 H -0.261 1.261 5 H -0.262 1.262 6 H -0.260 1.260 7 C -0.474 4.474 8 H 0.081 0.919 9 C 0.317 3.683 10 N -0.530 5.530 11 C 0.219 3.781 12 N -0.373 5.373 13 C 0.120 3.880 14 C -0.151 4.151 15 C -0.089 4.089 16 C -0.123 4.123 17 C -0.123 4.123 18 C 0.057 3.943 19 O -0.493 6.493 20 N -0.442 5.442 21 H 0.283 0.717 22 H 0.239 0.761 23 H 0.145 0.855 24 H 0.171 0.829 25 H 0.167 0.833 26 H 0.149 0.851 27 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.684 -13.248 -3.262 13.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.185 4.185 3 Si 0.820 3.180 4 H -0.185 1.185 5 H -0.187 1.187 6 H -0.184 1.184 7 C -0.516 4.516 8 H 0.099 0.901 9 C 0.059 3.941 10 N -0.256 5.256 11 C -0.077 4.077 12 N -0.159 5.159 13 C 0.023 3.977 14 C -0.172 4.172 15 C -0.107 4.107 16 C -0.142 4.142 17 C -0.142 4.142 18 C 0.009 3.991 19 O -0.303 6.303 20 N -0.277 5.277 21 H 0.093 0.907 22 H 0.255 0.745 23 H 0.163 0.837 24 H 0.188 0.812 25 H 0.185 0.815 26 H 0.166 0.834 27 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -1.435 -13.028 -2.620 13.366 hybrid contribution 0.246 0.906 -0.424 1.030 sum -1.190 -12.122 -3.043 12.555 Atomic orbital electron populations 1.70117 1.08646 1.29672 1.33029 1.26872 0.95855 1.04296 0.91443 0.84943 0.78665 0.75013 0.79395 1.18540 1.18660 1.18377 1.18677 0.94481 0.88194 1.50212 0.90125 1.21528 0.87246 0.93070 0.92225 1.71098 1.15511 1.15640 1.23312 1.27068 0.94657 0.88000 0.98000 1.47896 1.05610 1.05088 1.57273 1.18818 0.96400 0.79863 1.02570 1.21078 0.96104 0.95032 1.05018 1.21384 0.99568 0.92448 0.97313 1.21449 0.90961 1.01514 1.00270 1.21570 1.01527 0.90793 1.00316 1.18666 0.84597 0.90967 1.04843 1.84848 1.40310 1.70204 1.34915 1.78924 1.07304 0.97977 1.43447 0.90670 0.74496 0.83691 0.81185 0.81548 0.83372 0.75608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -44.58 11.92 21.82 0.26 -44.32 15 2 C 0.04 1.94 5.49 85.23 0.47 2.40 15 3 Si 1.00 40.77 29.56 68.60 2.03 42.80 15 4 H -0.26 -10.13 7.11 99.48 0.71 -9.42 15 5 H -0.26 -9.96 7.11 99.48 0.71 -9.25 15 6 H -0.26 -10.39 7.11 99.48 0.71 -9.69 15 7 C -0.47 -28.61 9.49 23.40 0.22 -28.39 15 8 H 0.08 4.75 7.85 -2.91 -0.02 4.73 15 9 C 0.32 19.48 7.60 134.84 1.02 20.50 15 10 N -0.53 -30.69 9.36 -197.21 -1.85 -32.54 15 11 C 0.22 10.30 11.98 180.02 2.16 12.46 15 12 N -0.37 -18.03 3.84 -190.46 -0.73 -18.76 15 13 C 0.12 4.65 6.71 38.29 0.26 4.91 15 14 C -0.15 -4.19 9.47 22.39 0.21 -3.98 15 15 C -0.09 -1.76 10.04 22.27 0.22 -1.54 15 16 C -0.12 -2.39 10.04 22.29 0.22 -2.16 15 17 C -0.12 -3.21 9.98 22.35 0.22 -2.98 15 18 C 0.06 2.08 6.72 22.64 0.15 2.23 15 19 O -0.49 -20.25 11.62 -92.44 -1.07 -21.33 15 20 N -0.44 -25.51 10.90 -56.39 -0.61 -26.12 15 21 H 0.28 14.29 8.30 -92.71 -0.77 13.52 15 22 H 0.24 8.11 7.10 -2.91 -0.02 8.09 15 23 H 0.15 3.39 6.80 -2.91 -0.02 3.37 15 24 H 0.17 1.94 8.06 -2.91 -0.02 1.91 15 25 H 0.17 1.86 8.06 -2.91 -0.02 1.84 15 26 H 0.15 3.16 8.06 -2.91 -0.02 3.13 15 27 H 0.39 13.83 9.06 -74.06 -0.67 13.16 15 Total: -1.00 -79.14 249.31 3.73 -75.41 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 0.55 Total: 21.41 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 5.16 Total: 3.45 kcal Atomic # 7 Polarization: -118.81 SS G_CDS: -2.93 Total: -121.74 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -1.07 Total: -21.33 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Total: -79.14 3.73 -75.41 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260393977.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.535 kcal (2) G-P(sol) polarization free energy of solvation -79.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds