Wall clock time and date at job start Mon Mar 30 2020 02:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86801 * 120.00257 * 2 1 4 4 H 1.48503 * 109.46974 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47358 * 119.99652 * 3 2 1 6 6 H 1.48501 * 109.47023 * 240.00057 * 3 2 1 7 7 C 1.40294 * 119.99818 * 179.71873 * 2 1 3 8 8 H 1.08001 * 119.99944 * 2.19446 * 7 2 1 9 9 C 1.40005 * 120.00115 * 182.18848 * 7 2 1 10 10 N 1.33083 * 126.67392 * 4.47096 * 9 7 2 11 11 N 1.28560 * 109.39292 * 179.82080 * 10 9 7 12 12 C 1.31312 * 110.27919 * 0.45996 * 11 10 9 13 13 N 1.35474 * 107.84056 * 359.71781 * 12 11 10 14 14 C 1.40009 * 127.08192 * 179.97438 * 13 12 11 15 15 C 1.38946 * 120.04074 * 129.76729 * 14 13 12 16 16 C 1.38117 * 120.03555 * 179.79002 * 15 14 13 17 17 C 1.38228 * 120.12535 * 0.46073 * 16 15 14 18 18 C 1.38773 * 120.08298 * 359.79452 * 17 16 15 19 19 O 1.35906 * 120.01407 * 179.97438 * 18 17 16 20 20 C 1.38615 * 119.96687 * 359.97213 * 18 17 16 21 21 H 0.96999 * 120.00013 * 174.52712 * 1 2 3 22 22 H 1.08001 * 126.07795 * 179.74510 * 12 11 10 23 23 H 1.08000 * 119.98505 * 359.97438 * 15 14 13 24 24 H 1.07998 * 119.93816 * 180.23063 * 16 15 14 25 25 H 1.07995 * 119.95388 * 179.76756 * 17 16 15 26 26 H 0.96695 * 113.99637 * 270.01584 * 19 18 17 27 27 H 1.07991 * 120.06580 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 1.2758 2.7465 -0.0006 5 1 3.0944 1.6964 1.2125 6 1 3.0945 1.6963 -1.2125 7 6 2.0081 -1.2150 0.0060 8 1 1.4687 -2.1501 -0.0253 9 6 3.4074 -1.2153 0.0523 10 7 4.1988 -0.1526 0.1768 11 7 5.4266 -0.5335 0.1860 12 6 5.4993 -1.8385 0.0604 13 7 4.2353 -2.3179 -0.0285 14 6 3.8480 -3.6556 -0.1731 15 6 2.8864 -4.1965 0.6715 16 6 2.5012 -5.5149 0.5260 17 6 3.0777 -6.3020 -0.4532 18 6 4.0425 -5.7685 -1.2961 19 8 4.6087 -6.5438 -2.2580 20 6 4.4282 -4.4444 -1.1564 21 1 -0.4850 -0.8362 -0.0801 22 1 6.4055 -2.4254 0.0332 23 1 2.4376 -3.5849 1.4402 24 1 1.7509 -5.9327 1.1809 25 1 2.7772 -7.3336 -0.5621 26 1 5.4035 -7.0121 -1.9682 27 1 5.1791 -4.0277 -1.8111 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260403589.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:06 Heat of formation + Delta-G solvation = 44.743755 kcal Electronic energy + Delta-G solvation = -15379.113851 eV Core-core repulsion = 12716.964309 eV Total energy + Delta-G solvation = -2662.149542 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.075 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.48700 -39.45107 -36.80615 -33.94876 -33.61005 -30.38348 -29.72775 -28.93358 -25.54330 -23.10653 -22.65897 -20.89938 -20.26235 -18.66323 -17.87270 -16.58288 -16.07315 -15.71028 -14.87470 -14.27520 -14.18393 -13.85657 -13.61351 -13.05962 -12.64823 -12.29315 -12.06129 -11.61408 -11.16372 -10.88482 -10.61339 -10.05872 -9.81706 -9.52770 -9.24925 -8.73020 -8.51405 -8.24726 -8.17616 -7.46612 -4.94198 1.23917 1.33045 2.95046 3.47614 3.59756 3.60999 3.79235 3.98653 4.16443 4.22940 4.38299 4.95796 5.07363 5.11825 5.34736 5.48095 5.53173 5.81508 5.90019 6.33348 6.42568 6.45781 6.50249 6.63266 6.83240 7.15633 7.34986 7.59439 7.71253 8.01760 8.35550 8.51990 9.90985 10.14695 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.033033 B = 0.008798 C = 0.007511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.441034 B = 3181.721007 C = 3726.973720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.063 3.937 3 Si 1.115 2.885 4 H -0.312 1.312 5 H -0.264 1.264 6 H -0.277 1.277 7 C -0.485 4.485 8 H 0.088 0.912 9 C 0.336 3.664 10 N -0.427 5.427 11 N -0.275 5.275 12 C 0.059 3.941 13 N -0.483 5.483 14 C 0.188 3.812 15 C -0.126 4.126 16 C -0.087 4.087 17 C -0.160 4.160 18 C 0.117 3.883 19 O -0.498 6.498 20 C -0.158 4.158 21 H 0.285 0.715 22 H 0.190 0.810 23 H 0.134 0.866 24 H 0.131 0.869 25 H 0.128 0.872 26 H 0.388 0.612 27 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.707 -12.535 0.037 13.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.160 4.160 3 Si 0.944 3.056 4 H -0.242 1.242 5 H -0.190 1.190 6 H -0.204 1.204 7 C -0.525 4.525 8 H 0.106 0.894 9 C 0.098 3.902 10 N -0.276 5.276 11 N -0.111 5.111 12 C -0.227 4.227 13 N -0.179 5.179 14 C 0.093 3.907 15 C -0.146 4.146 16 C -0.106 4.106 17 C -0.179 4.179 18 C 0.072 3.928 19 O -0.307 6.307 20 C -0.179 4.179 21 H 0.096 0.904 22 H 0.207 0.793 23 H 0.152 0.848 24 H 0.149 0.851 25 H 0.146 0.854 26 H 0.243 0.757 27 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.495 -9.207 -0.070 10.246 hybrid contribution 0.136 -3.600 -0.060 3.603 sum 4.632 -12.806 -0.130 13.619 Atomic orbital electron populations 1.70619 1.07660 1.32751 1.31346 1.27436 0.95213 1.04852 0.88489 0.82647 0.71754 0.70202 0.81047 1.24171 1.18977 1.20370 1.19673 0.87010 0.97377 1.48392 0.89440 1.21954 0.93824 0.80495 0.93951 1.74110 0.95569 1.21202 1.36679 1.73733 1.14620 1.08437 1.14300 1.25378 0.87579 0.93244 1.16507 1.43565 1.07359 1.04589 1.62389 1.17326 0.96245 0.82795 0.94298 1.21284 0.98437 0.95443 0.99467 1.20866 0.99006 0.93062 0.97655 1.21352 0.99487 1.00748 0.96358 1.18124 0.95565 0.89458 0.89665 1.84838 1.46003 1.63050 1.36846 1.21298 1.03895 0.94418 0.98307 0.90406 0.79327 0.84776 0.85119 0.85415 0.75679 0.85076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.33 13.64 55.57 0.76 -20.57 15 2 C 0.06 1.71 5.52 -17.27 -0.10 1.61 15 3 Si 1.11 28.10 25.80 -169.99 -4.39 23.71 15 4 H -0.31 -7.52 7.11 56.52 0.40 -7.12 15 5 H -0.26 -6.84 6.87 56.52 0.39 -6.45 15 6 H -0.28 -7.20 7.11 56.52 0.40 -6.80 15 7 C -0.48 -12.95 9.11 -38.15 -0.35 -13.30 15 8 H 0.09 2.29 6.77 -52.49 -0.36 1.93 15 9 C 0.34 8.91 7.16 -154.96 -1.11 7.80 15 10 N -0.43 -11.84 7.58 31.26 0.24 -11.61 15 11 N -0.27 -7.04 12.21 29.82 0.36 -6.67 15 12 C 0.06 1.28 12.44 -89.30 -1.11 0.17 15 13 N -0.48 -11.02 2.90 -61.33 -0.18 -11.20 15 14 C 0.19 3.62 5.88 -83.66 -0.49 3.13 15 15 C -0.13 -2.21 8.47 -39.36 -0.33 -2.54 15 16 C -0.09 -1.21 10.03 -39.63 -0.40 -1.61 15 17 C -0.16 -2.09 9.98 -39.39 -0.39 -2.48 15 18 C 0.12 1.66 6.70 -39.24 -0.26 1.39 15 19 O -0.50 -5.99 13.50 -19.44 -0.26 -6.25 15 20 C -0.16 -2.62 9.64 -39.24 -0.38 -3.00 15 21 H 0.28 7.21 8.72 -40.82 -0.36 6.86 15 22 H 0.19 3.21 8.06 -52.49 -0.42 2.79 15 23 H 0.13 2.50 7.65 -52.49 -0.40 2.10 15 24 H 0.13 1.44 8.06 -52.49 -0.42 1.02 15 25 H 0.13 1.33 8.06 -52.49 -0.42 0.91 15 26 H 0.39 2.55 9.06 45.56 0.41 2.96 15 27 H 0.13 2.10 8.06 -52.49 -0.42 1.67 15 LS Contribution 246.12 15.07 3.71 3.71 Total: -1.00 -31.96 246.12 -5.88 -37.84 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -1.20 Total: -0.14 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -4.92 Total: -8.82 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: 1.18 Total: -50.05 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: -0.26 Total: -6.25 kcal Atomic # 14 Polarization: 28.10 SS G_CDS: -4.39 Total: 23.71 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -31.96 -5.88 -37.84 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260403589.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.586 kcal (2) G-P(sol) polarization free energy of solvation -31.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds