Wall clock time and date at job start Mon Mar 30 2020 02:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86801 * 120.00257 * 2 1 4 4 H 1.48503 * 109.46974 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47358 * 119.99652 * 3 2 1 6 6 H 1.48501 * 109.47023 * 240.00057 * 3 2 1 7 7 C 1.40294 * 119.99818 * 179.71873 * 2 1 3 8 8 H 1.08001 * 119.99944 * 2.19446 * 7 2 1 9 9 C 1.40005 * 120.00115 * 182.18848 * 7 2 1 10 10 N 1.33083 * 126.67392 * 4.47096 * 9 7 2 11 11 N 1.28560 * 109.39292 * 179.82080 * 10 9 7 12 12 C 1.31312 * 110.27919 * 0.45996 * 11 10 9 13 13 N 1.35474 * 107.84056 * 359.71781 * 12 11 10 14 14 C 1.40009 * 127.08192 * 179.97438 * 13 12 11 15 15 C 1.38946 * 120.04074 * 129.76729 * 14 13 12 16 16 C 1.38117 * 120.03555 * 179.79002 * 15 14 13 17 17 C 1.38228 * 120.12535 * 0.46073 * 16 15 14 18 18 C 1.38773 * 120.08298 * 359.79452 * 17 16 15 19 19 O 1.35906 * 120.01407 * 179.97438 * 18 17 16 20 20 C 1.38615 * 119.96687 * 359.97213 * 18 17 16 21 21 H 0.96999 * 120.00013 * 174.52712 * 1 2 3 22 22 H 1.08001 * 126.07795 * 179.74510 * 12 11 10 23 23 H 1.08000 * 119.98505 * 359.97438 * 15 14 13 24 24 H 1.07998 * 119.93816 * 180.23063 * 16 15 14 25 25 H 1.07995 * 119.95388 * 179.76756 * 17 16 15 26 26 H 0.96695 * 113.99637 * 270.01584 * 19 18 17 27 27 H 1.07991 * 120.06580 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 1.2758 2.7465 -0.0006 5 1 3.0944 1.6964 1.2125 6 1 3.0945 1.6963 -1.2125 7 6 2.0081 -1.2150 0.0060 8 1 1.4687 -2.1501 -0.0253 9 6 3.4074 -1.2153 0.0523 10 7 4.1988 -0.1526 0.1768 11 7 5.4266 -0.5335 0.1860 12 6 5.4993 -1.8385 0.0604 13 7 4.2353 -2.3179 -0.0285 14 6 3.8480 -3.6556 -0.1731 15 6 2.8864 -4.1965 0.6715 16 6 2.5012 -5.5149 0.5260 17 6 3.0777 -6.3020 -0.4532 18 6 4.0425 -5.7685 -1.2961 19 8 4.6087 -6.5438 -2.2580 20 6 4.4282 -4.4444 -1.1564 21 1 -0.4850 -0.8362 -0.0801 22 1 6.4055 -2.4254 0.0332 23 1 2.4376 -3.5849 1.4402 24 1 1.7509 -5.9327 1.1809 25 1 2.7772 -7.3336 -0.5621 26 1 5.4035 -7.0121 -1.9682 27 1 5.1791 -4.0277 -1.8111 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260403589.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:05 Heat of formation + Delta-G solvation = 23.470450 kcal Electronic energy + Delta-G solvation = -15380.036330 eV Core-core repulsion = 12716.964309 eV Total energy + Delta-G solvation = -2663.072021 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.075 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.31793 -40.64940 -37.95013 -35.93426 -35.16264 -32.13200 -31.17865 -30.26987 -27.47875 -24.56019 -23.99996 -22.63387 -21.86129 -20.38667 -19.42878 -17.92386 -17.31354 -17.07469 -16.33015 -15.97317 -15.85282 -15.62961 -14.88502 -14.84749 -14.47009 -13.56581 -13.31770 -13.05595 -13.01408 -12.75413 -11.95374 -11.73087 -11.59331 -11.45264 -11.17526 -10.47169 -10.21544 -9.92146 -9.58341 -9.49962 -6.94676 -0.02655 0.15591 1.11164 1.53459 1.70039 1.86027 2.00832 2.18360 2.38662 2.52774 3.02458 3.19186 3.80356 3.95451 4.05248 4.10607 4.35070 4.39390 4.61971 4.74677 4.89769 5.02709 5.25539 5.30360 5.34518 5.46097 5.68108 5.86302 6.00997 6.41558 6.68801 6.81362 7.90036 8.22340 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.033033 B = 0.008798 C = 0.007511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.441034 B = 3181.721007 C = 3726.973720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.042 3.958 3 Si 1.148 2.852 4 H -0.296 1.296 5 H -0.280 1.280 6 H -0.293 1.293 7 C -0.504 4.504 8 H 0.084 0.916 9 C 0.319 3.681 10 N -0.458 5.458 11 N -0.322 5.322 12 C 0.096 3.904 13 N -0.480 5.480 14 C 0.145 3.855 15 C -0.143 4.143 16 C -0.077 4.077 17 C -0.142 4.142 18 C 0.129 3.871 19 O -0.501 6.501 20 C -0.162 4.162 21 H 0.286 0.714 22 H 0.240 0.760 23 H 0.111 0.889 24 H 0.163 0.837 25 H 0.166 0.834 26 H 0.415 0.585 27 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.461 -15.600 -0.429 16.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.178 4.178 3 Si 0.977 3.023 4 H -0.226 1.226 5 H -0.207 1.207 6 H -0.221 1.221 7 C -0.545 4.545 8 H 0.102 0.898 9 C 0.076 3.924 10 N -0.305 5.305 11 N -0.157 5.157 12 C -0.192 4.192 13 N -0.175 5.175 14 C 0.053 3.947 15 C -0.163 4.163 16 C -0.096 4.096 17 C -0.160 4.160 18 C 0.083 3.917 19 O -0.314 6.314 20 C -0.183 4.183 21 H 0.098 0.902 22 H 0.256 0.744 23 H 0.129 0.871 24 H 0.181 0.819 25 H 0.184 0.816 26 H 0.275 0.725 27 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.262 -12.312 -0.535 13.400 hybrid contribution 0.097 -2.973 0.040 2.975 sum 5.359 -15.285 -0.495 16.205 Atomic orbital electron populations 1.70610 1.07629 1.32911 1.33055 1.27811 0.95561 1.05900 0.88563 0.82164 0.70916 0.69882 0.79381 1.22561 1.20710 1.22112 1.19607 0.87420 0.97167 1.50280 0.89812 1.21993 0.94097 0.81715 0.94604 1.73991 0.96618 1.22628 1.37266 1.73683 1.13930 1.10487 1.17631 1.26360 0.88876 0.92692 1.11224 1.43722 1.06991 1.05676 1.61079 1.17660 0.98740 0.81476 0.96842 1.21272 0.98604 0.97030 0.99402 1.21202 0.98924 0.91351 0.98074 1.21772 0.97602 1.02182 0.94485 1.18150 0.95344 0.88742 0.89415 1.84787 1.47502 1.62750 1.36388 1.21356 1.03847 0.95334 0.97749 0.90235 0.74395 0.87100 0.81938 0.81623 0.72495 0.84913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.34 13.64 21.89 0.30 -44.04 15 2 C 0.04 2.32 5.52 85.37 0.47 2.80 15 3 Si 1.15 58.95 25.80 68.60 1.77 60.72 15 4 H -0.30 -14.20 7.11 99.48 0.71 -13.49 15 5 H -0.28 -14.97 6.87 99.48 0.68 -14.28 15 6 H -0.29 -15.68 7.11 99.48 0.71 -14.97 15 7 C -0.50 -27.73 9.11 23.20 0.21 -27.52 15 8 H 0.08 4.53 6.77 -2.91 -0.02 4.51 15 9 C 0.32 17.23 7.16 133.37 0.96 18.19 15 10 N -0.46 -25.91 7.58 -55.02 -0.42 -26.33 15 11 N -0.32 -16.55 12.21 -59.57 -0.73 -17.27 15 12 C 0.10 4.07 12.44 179.89 2.24 6.30 15 13 N -0.48 -21.75 2.90 -347.95 -1.01 -22.76 15 14 C 0.15 5.42 5.88 38.13 0.22 5.65 15 15 C -0.14 -4.86 8.47 22.41 0.19 -4.67 15 16 C -0.08 -1.88 10.03 22.24 0.22 -1.66 15 17 C -0.14 -3.00 9.98 22.40 0.22 -2.78 15 18 C 0.13 3.12 6.70 22.49 0.15 3.27 15 19 O -0.50 -9.64 13.50 -92.49 -1.25 -10.89 15 20 C -0.16 -4.95 9.64 22.49 0.22 -4.73 15 21 H 0.29 14.83 8.72 -92.71 -0.81 14.02 15 22 H 0.24 7.30 8.06 -2.91 -0.02 7.27 15 23 H 0.11 4.24 7.65 -2.91 -0.02 4.22 15 24 H 0.16 2.89 8.06 -2.91 -0.02 2.87 15 25 H 0.17 2.34 8.06 -2.91 -0.02 2.32 15 26 H 0.42 3.30 9.06 -74.06 -0.67 2.63 15 27 H 0.13 3.91 8.06 -2.92 -0.02 3.89 15 Total: -1.00 -70.99 246.12 4.25 -66.74 By element: Atomic # 1 Polarization: -1.50 SS G_CDS: 0.48 Total: -1.02 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 5.10 Total: -5.15 kcal Atomic # 7 Polarization: -108.55 SS G_CDS: -1.86 Total: -110.40 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -1.25 Total: -10.89 kcal Atomic # 14 Polarization: 58.95 SS G_CDS: 1.77 Total: 60.72 kcal Total: -70.99 4.25 -66.74 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260403589.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.211 kcal (2) G-P(sol) polarization free energy of solvation -70.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds