Wall clock time and date at job start Mon Mar 30 2020 02:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86799 * 120.00255 * 2 1 4 4 H 1.48493 * 109.47402 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46799 * 300.00361 * 3 2 1 6 6 H 1.48507 * 109.47115 * 59.99738 * 3 2 1 7 7 C 1.40283 * 120.00163 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00501 * 180.02562 * 7 2 1 9 9 C 1.40008 * 119.99755 * 359.97438 * 7 2 1 10 10 N 1.33091 * 126.67751 * 0.02562 * 9 7 2 11 11 N 1.28561 * 109.38697 * 179.74863 * 10 9 7 12 12 C 1.31316 * 110.27075 * 0.42097 * 11 10 9 13 13 N 1.35433 * 107.84162 * 359.58585 * 12 11 10 14 14 C 1.40111 * 127.07186 * 180.22298 * 13 12 11 15 15 C 1.38901 * 120.01448 * 129.74900 * 14 13 12 16 16 C 1.38039 * 119.98173 * 179.76902 * 15 14 13 17 17 C 1.38767 * 120.01651 * 0.50612 * 16 15 14 18 18 O 1.35939 * 119.98581 * 179.76632 * 17 16 15 19 19 C 1.38766 * 120.02941 * 359.75021 * 17 16 15 20 20 C 1.38036 * 120.01862 * 359.97438 * 19 17 16 21 21 H 0.97005 * 119.99848 * 359.97438 * 1 2 3 22 22 H 1.08002 * 126.08070 * 179.85674 * 12 11 10 23 23 H 1.07999 * 120.00721 * 0.02571 * 15 14 13 24 24 H 1.08000 * 119.99146 * 180.24965 * 16 15 14 25 25 H 0.96699 * 113.99961 * 269.98098 * 18 17 16 26 26 H 1.08008 * 119.98864 * 179.97438 * 19 17 16 27 27 H 1.07997 * 120.01302 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7007 1.3463 -0.0006 5 1 1.8819 2.3964 -1.2125 6 1 1.8820 2.3965 1.2125 7 6 2.0082 -1.2149 -0.0005 8 1 3.0881 -1.2149 -0.0001 9 6 1.3081 -2.4274 -0.0005 10 7 -0.0138 -2.5821 -0.0005 11 7 -0.2966 -3.8362 -0.0059 12 6 0.8049 -4.5511 -0.0005 13 7 1.8548 -3.6955 -0.0005 14 6 3.2157 -4.0286 0.0000 15 6 4.0737 -3.4470 -0.9247 16 6 5.4153 -3.7721 -0.9206 17 6 5.9049 -4.6875 0.0003 18 8 7.2253 -5.0107 0.0007 19 6 5.0473 -5.2729 0.9209 20 6 3.7066 -4.9445 0.9216 21 1 -0.4850 0.8401 0.0004 22 1 0.8633 -5.6295 -0.0009 23 1 3.6920 -2.7376 -1.6440 24 1 6.0832 -3.3170 -1.6369 25 1 7.4466 -5.7617 -0.5669 26 1 5.4291 -5.9856 1.6370 27 1 3.0393 -5.3998 1.6384 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260508036.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:30 Heat of formation + Delta-G solvation = 57.176965 kcal Electronic energy + Delta-G solvation = -15271.296052 eV Core-core repulsion = 12609.685655 eV Total energy + Delta-G solvation = -2661.610397 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.075 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.09080 -39.30197 -36.68568 -33.73811 -32.97617 -30.92204 -29.29687 -28.07730 -25.68012 -22.81150 -22.68339 -20.44678 -20.23572 -18.31299 -17.84164 -16.45573 -15.60092 -15.35618 -14.98006 -14.27864 -13.91879 -13.52503 -13.27466 -13.17836 -12.61108 -12.05078 -11.93022 -11.42055 -11.33338 -10.99441 -10.41805 -10.35579 -9.71414 -9.55177 -9.44552 -8.85054 -8.46562 -7.87087 -7.76596 -6.69603 -4.65511 1.30940 1.51039 2.90875 3.05448 3.10318 3.38594 3.75682 3.86686 3.98332 4.32383 4.47047 5.07483 5.09140 5.30772 5.51388 5.67783 5.71856 5.98842 6.15328 6.29593 6.55440 6.62166 6.76695 6.89961 7.03319 7.21561 7.50468 7.70172 8.11070 8.17710 8.66751 8.87112 10.22915 10.68420 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.024448 B = 0.009323 C = 0.007045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.991109 B = 3002.624960 C = 3973.646690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.731 5.731 2 C 0.077 3.923 3 Si 0.918 3.082 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.441 4.441 8 H 0.087 0.913 9 C 0.338 3.662 10 N -0.345 5.345 11 N -0.294 5.294 12 C 0.037 3.963 13 N -0.485 5.485 14 C 0.170 3.830 15 C -0.105 4.105 16 C -0.126 4.126 17 C 0.079 3.921 18 O -0.500 6.500 19 C -0.128 4.128 20 C -0.119 4.119 21 H 0.280 0.720 22 H 0.182 0.818 23 H 0.137 0.863 24 H 0.130 0.870 25 H 0.384 0.616 26 H 0.129 0.871 27 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.619 -6.137 -1.205 13.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.354 5.354 2 C -0.149 4.149 3 Si 0.741 3.259 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.481 4.481 8 H 0.105 0.895 9 C 0.098 3.902 10 N -0.191 5.191 11 N -0.132 5.132 12 C -0.247 4.247 13 N -0.182 5.182 14 C 0.075 3.925 15 C -0.125 4.125 16 C -0.145 4.145 17 C 0.034 3.966 18 O -0.309 6.309 19 C -0.147 4.147 20 C -0.140 4.140 21 H 0.091 0.909 22 H 0.199 0.801 23 H 0.155 0.845 24 H 0.148 0.852 25 H 0.238 0.762 26 H 0.147 0.853 27 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.795 -5.217 -0.814 11.128 hybrid contribution 1.796 -0.095 -0.251 1.816 sum 11.591 -5.312 -1.065 12.795 Atomic orbital electron populations 1.69960 1.07150 1.28748 1.29564 1.25835 0.94907 1.00777 0.93346 0.86099 0.80501 0.80503 0.78765 1.18347 1.19604 1.19607 1.18360 0.94109 0.87165 1.48440 0.89477 1.21895 0.89641 0.83563 0.95145 1.75672 1.08178 1.04606 1.30644 1.74003 1.24124 1.00920 1.14197 1.25285 0.83903 0.97032 1.18498 1.43846 1.03267 1.08130 1.62948 1.17643 0.83374 0.96635 0.94842 1.21149 0.92617 1.00647 0.98097 1.21232 0.95004 0.99145 0.99158 1.18398 0.83063 0.98151 0.96987 1.84852 1.21388 1.54304 1.70368 1.21149 0.92539 1.01046 1.00000 1.20977 0.95182 0.99762 0.98061 0.90878 0.80109 0.84466 0.85196 0.76152 0.85345 0.85319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.01 11.95 55.57 0.66 -19.35 15 2 C 0.08 1.97 5.50 -17.28 -0.10 1.88 15 3 Si 0.92 18.55 29.56 -169.99 -5.03 13.53 15 4 H -0.26 -5.11 7.11 56.52 0.40 -4.71 15 5 H -0.27 -5.35 7.11 56.52 0.40 -4.95 15 6 H -0.27 -5.40 7.11 56.52 0.40 -5.00 15 7 C -0.44 -11.68 8.60 -38.15 -0.33 -12.00 15 8 H 0.09 2.14 6.72 -52.49 -0.35 1.79 15 9 C 0.34 9.37 7.40 -154.97 -1.15 8.22 15 10 N -0.35 -10.39 10.53 31.25 0.33 -10.06 15 11 N -0.29 -8.13 12.21 29.81 0.36 -7.76 15 12 C 0.04 0.86 12.44 -89.33 -1.11 -0.25 15 13 N -0.49 -11.51 2.90 -61.30 -0.18 -11.69 15 14 C 0.17 3.33 5.87 -83.58 -0.49 2.84 15 15 C -0.10 -1.87 8.49 -39.41 -0.33 -2.20 15 16 C -0.13 -1.86 9.98 -39.46 -0.39 -2.25 15 17 C 0.08 1.09 6.71 -39.19 -0.26 0.83 15 18 O -0.50 -5.86 13.50 -19.55 -0.26 -6.12 15 19 C -0.13 -1.79 9.98 -39.46 -0.39 -2.18 15 20 C -0.12 -1.96 9.70 -39.41 -0.38 -2.34 15 21 H 0.28 6.88 8.29 -40.82 -0.34 6.54 15 22 H 0.18 3.39 8.06 -52.49 -0.42 2.97 15 23 H 0.14 2.56 7.71 -52.49 -0.40 2.16 15 24 H 0.13 1.61 8.06 -52.49 -0.42 1.19 15 25 H 0.38 2.49 9.06 45.56 0.41 2.90 15 26 H 0.13 1.46 8.06 -52.48 -0.42 1.04 15 27 H 0.13 1.99 8.06 -52.49 -0.42 1.57 15 LS Contribution 250.68 15.07 3.78 3.78 Total: -1.00 -33.21 250.68 -6.44 -39.65 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -1.17 Total: 5.49 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -4.94 Total: -7.46 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: 1.18 Total: -48.86 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.26 Total: -6.12 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -33.21 -6.44 -39.65 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260508036.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.830 kcal (2) G-P(sol) polarization free energy of solvation -33.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds