Wall clock time and date at job start Mon Mar 30 2020 02:55:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30673 * 1
3 3 Si 1.86799 * 120.00255 * 2 1
4 4 H 1.48493 * 109.47402 * 180.02562 * 3 2 1
5 5 H 1.48504 * 109.46799 * 300.00361 * 3 2 1
6 6 H 1.48507 * 109.47115 * 59.99738 * 3 2 1
7 7 C 1.40283 * 120.00163 * 180.02562 * 2 1 3
8 8 H 1.07993 * 120.00501 * 180.02562 * 7 2 1
9 9 C 1.40008 * 119.99755 * 359.97438 * 7 2 1
10 10 N 1.33091 * 126.67751 * 0.02562 * 9 7 2
11 11 N 1.28561 * 109.38697 * 179.74863 * 10 9 7
12 12 C 1.31316 * 110.27075 * 0.42097 * 11 10 9
13 13 N 1.35433 * 107.84162 * 359.58585 * 12 11 10
14 14 C 1.40111 * 127.07186 * 180.22298 * 13 12 11
15 15 C 1.38901 * 120.01448 * 129.74900 * 14 13 12
16 16 C 1.38039 * 119.98173 * 179.76902 * 15 14 13
17 17 C 1.38767 * 120.01651 * 0.50612 * 16 15 14
18 18 O 1.35939 * 119.98581 * 179.76632 * 17 16 15
19 19 C 1.38766 * 120.02941 * 359.75021 * 17 16 15
20 20 C 1.38036 * 120.01862 * 359.97438 * 19 17 16
21 21 H 0.97005 * 119.99848 * 359.97438 * 1 2 3
22 22 H 1.08002 * 126.08070 * 179.85674 * 12 11 10
23 23 H 1.07999 * 120.00721 * 0.02571 * 15 14 13
24 24 H 1.08000 * 119.99146 * 180.24965 * 16 15 14
25 25 H 0.96699 * 113.99961 * 269.98098 * 18 17 16
26 26 H 1.08008 * 119.98864 * 179.97438 * 19 17 16
27 27 H 1.07997 * 120.01302 * 180.02562 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3067 0.0000 0.0000
3 14 2.2408 1.6177 0.0000
4 1 3.7007 1.3463 -0.0006
5 1 1.8819 2.3964 -1.2125
6 1 1.8820 2.3965 1.2125
7 6 2.0082 -1.2149 -0.0005
8 1 3.0881 -1.2149 -0.0001
9 6 1.3081 -2.4274 -0.0005
10 7 -0.0138 -2.5821 -0.0005
11 7 -0.2966 -3.8362 -0.0059
12 6 0.8049 -4.5511 -0.0005
13 7 1.8548 -3.6955 -0.0005
14 6 3.2157 -4.0286 0.0000
15 6 4.0737 -3.4470 -0.9247
16 6 5.4153 -3.7721 -0.9206
17 6 5.9049 -4.6875 0.0003
18 8 7.2253 -5.0107 0.0007
19 6 5.0473 -5.2729 0.9209
20 6 3.7066 -4.9445 0.9216
21 1 -0.4850 0.8401 0.0004
22 1 0.8633 -5.6295 -0.0009
23 1 3.6920 -2.7376 -1.6440
24 1 6.0832 -3.3170 -1.6369
25 1 7.4466 -5.7617 -0.5669
26 1 5.4291 -5.9856 1.6370
27 1 3.0393 -5.3998 1.6384
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260508036.mol2 27
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:55:30
Heat of formation + Delta-G solvation = 57.176965 kcal
Electronic energy + Delta-G solvation = -15271.296052 eV
Core-core repulsion = 12609.685655 eV
Total energy + Delta-G solvation = -2661.610397 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 231.075 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-41.09080 -39.30197 -36.68568 -33.73811 -32.97617 -30.92204 -29.29687 -28.07730
-25.68012 -22.81150 -22.68339 -20.44678 -20.23572 -18.31299 -17.84164 -16.45573
-15.60092 -15.35618 -14.98006 -14.27864 -13.91879 -13.52503 -13.27466 -13.17836
-12.61108 -12.05078 -11.93022 -11.42055 -11.33338 -10.99441 -10.41805 -10.35579
-9.71414 -9.55177 -9.44552 -8.85054 -8.46562 -7.87087 -7.76596 -6.69603
-4.65511 1.30940 1.51039 2.90875 3.05448 3.10318 3.38594 3.75682
3.86686 3.98332 4.32383 4.47047 5.07483 5.09140 5.30772 5.51388
5.67783 5.71856 5.98842 6.15328 6.29593 6.55440 6.62166 6.76695
6.89961 7.03319 7.21561 7.50468 7.70172 8.11070 8.17710 8.66751
8.87112 10.22915 10.68420
Molecular weight = 231.07amu
Principal moments of inertia in cm(-1)
A = 0.024448 B = 0.009323 C = 0.007045
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1144.991109 B = 3002.624960 C = 3973.646690
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.731 5.731
2 C 0.077 3.923
3 Si 0.918 3.082
4 H -0.260 1.260
5 H -0.271 1.271
6 H -0.271 1.271
7 C -0.441 4.441
8 H 0.087 0.913
9 C 0.338 3.662
10 N -0.345 5.345
11 N -0.294 5.294
12 C 0.037 3.963
13 N -0.485 5.485
14 C 0.170 3.830
15 C -0.105 4.105
16 C -0.126 4.126
17 C 0.079 3.921
18 O -0.500 6.500
19 C -0.128 4.128
20 C -0.119 4.119
21 H 0.280 0.720
22 H 0.182 0.818
23 H 0.137 0.863
24 H 0.130 0.870
25 H 0.384 0.616
26 H 0.129 0.871
27 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.619 -6.137 -1.205 13.196
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.354 5.354
2 C -0.149 4.149
3 Si 0.741 3.259
4 H -0.183 1.183
5 H -0.196 1.196
6 H -0.196 1.196
7 C -0.481 4.481
8 H 0.105 0.895
9 C 0.098 3.902
10 N -0.191 5.191
11 N -0.132 5.132
12 C -0.247 4.247
13 N -0.182 5.182
14 C 0.075 3.925
15 C -0.125 4.125
16 C -0.145 4.145
17 C 0.034 3.966
18 O -0.309 6.309
19 C -0.147 4.147
20 C -0.140 4.140
21 H 0.091 0.909
22 H 0.199 0.801
23 H 0.155 0.845
24 H 0.148 0.852
25 H 0.238 0.762
26 H 0.147 0.853
27 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges 9.795 -5.217 -0.814 11.128
hybrid contribution 1.796 -0.095 -0.251 1.816
sum 11.591 -5.312 -1.065 12.795
Atomic orbital electron populations
1.69960 1.07150 1.28748 1.29564 1.25835 0.94907 1.00777 0.93346
0.86099 0.80501 0.80503 0.78765 1.18347 1.19604 1.19607 1.18360
0.94109 0.87165 1.48440 0.89477 1.21895 0.89641 0.83563 0.95145
1.75672 1.08178 1.04606 1.30644 1.74003 1.24124 1.00920 1.14197
1.25285 0.83903 0.97032 1.18498 1.43846 1.03267 1.08130 1.62948
1.17643 0.83374 0.96635 0.94842 1.21149 0.92617 1.00647 0.98097
1.21232 0.95004 0.99145 0.99158 1.18398 0.83063 0.98151 0.96987
1.84852 1.21388 1.54304 1.70368 1.21149 0.92539 1.01046 1.00000
1.20977 0.95182 0.99762 0.98061 0.90878 0.80109 0.84466 0.85196
0.76152 0.85345 0.85319
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.73 -20.01 11.95 55.57 0.66 -19.35 15
2 C 0.08 1.97 5.50 -17.28 -0.10 1.88 15
3 Si 0.92 18.55 29.56 -169.99 -5.03 13.53 15
4 H -0.26 -5.11 7.11 56.52 0.40 -4.71 15
5 H -0.27 -5.35 7.11 56.52 0.40 -4.95 15
6 H -0.27 -5.40 7.11 56.52 0.40 -5.00 15
7 C -0.44 -11.68 8.60 -38.15 -0.33 -12.00 15
8 H 0.09 2.14 6.72 -52.49 -0.35 1.79 15
9 C 0.34 9.37 7.40 -154.97 -1.15 8.22 15
10 N -0.35 -10.39 10.53 31.25 0.33 -10.06 15
11 N -0.29 -8.13 12.21 29.81 0.36 -7.76 15
12 C 0.04 0.86 12.44 -89.33 -1.11 -0.25 15
13 N -0.49 -11.51 2.90 -61.30 -0.18 -11.69 15
14 C 0.17 3.33 5.87 -83.58 -0.49 2.84 15
15 C -0.10 -1.87 8.49 -39.41 -0.33 -2.20 15
16 C -0.13 -1.86 9.98 -39.46 -0.39 -2.25 15
17 C 0.08 1.09 6.71 -39.19 -0.26 0.83 15
18 O -0.50 -5.86 13.50 -19.55 -0.26 -6.12 15
19 C -0.13 -1.79 9.98 -39.46 -0.39 -2.18 15
20 C -0.12 -1.96 9.70 -39.41 -0.38 -2.34 15
21 H 0.28 6.88 8.29 -40.82 -0.34 6.54 15
22 H 0.18 3.39 8.06 -52.49 -0.42 2.97 15
23 H 0.14 2.56 7.71 -52.49 -0.40 2.16 15
24 H 0.13 1.61 8.06 -52.49 -0.42 1.19 15
25 H 0.38 2.49 9.06 45.56 0.41 2.90 15
26 H 0.13 1.46 8.06 -52.48 -0.42 1.04 15
27 H 0.13 1.99 8.06 -52.49 -0.42 1.57 15
LS Contribution 250.68 15.07 3.78 3.78
Total: -1.00 -33.21 250.68 -6.44 -39.65
By element:
Atomic # 1 Polarization: 6.66 SS G_CDS: -1.17 Total: 5.49 kcal
Atomic # 6 Polarization: -2.52 SS G_CDS: -4.94 Total: -7.46 kcal
Atomic # 7 Polarization: -50.04 SS G_CDS: 1.18 Total: -48.86 kcal
Atomic # 8 Polarization: -5.86 SS G_CDS: -0.26 Total: -6.12 kcal
Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.53 kcal
Total LS contribution 3.78 Total: 3.78 kcal
Total: -33.21 -6.44 -39.65 kcal
The number of atoms in the molecule is 27
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260508036.mol2 27
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 96.830 kcal
(2) G-P(sol) polarization free energy of solvation -33.210 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.620 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.443 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.653 kcal
(6) G-S(sol) free energy of system = (1) + (5) 57.177 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds