Wall clock time and date at job start Mon Mar 30 2020 02:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36943 * 119.99838 * 2 1 4 4 H 1.08002 * 120.00128 * 219.26992 * 3 2 1 5 5 C 1.38813 * 119.99943 * 39.27363 * 3 2 1 6 6 N 1.31621 * 119.99771 * 25.74459 * 5 3 2 7 7 Si 1.86797 * 119.99929 * 205.74789 * 5 3 2 8 8 H 1.48497 * 109.47163 * 59.99650 * 7 5 3 9 9 H 1.48504 * 109.47055 * 299.99810 * 7 5 3 10 10 H 1.48498 * 109.47304 * 180.02562 * 7 5 3 11 11 C 1.46500 * 120.00224 * 179.97438 * 2 1 3 12 12 H 1.09000 * 109.47503 * 179.97438 * 11 2 1 13 13 C 1.53159 * 109.47784 * 300.01628 * 11 2 1 14 14 S 1.81624 * 109.03674 * 177.78046 * 13 11 2 15 15 O 1.42100 * 109.47332 * 187.34123 * 14 13 11 16 16 C 1.81629 * 102.56014 * 303.50688 * 14 13 11 17 17 C 1.53169 * 109.03300 * 56.49066 * 16 14 13 18 18 C 1.50652 * 109.44167 * 302.21356 * 17 16 14 19 19 O 1.20755 * 119.83850 * 242.49589 * 18 17 16 20 20 H 1.08997 * 109.46754 * 95.24068 * 1 2 3 21 21 H 1.09003 * 109.46700 * 215.23623 * 1 2 3 22 22 H 1.08995 * 109.47362 * 335.23595 * 1 2 3 23 23 H 0.96993 * 120.00182 * 5.44762 * 6 5 3 24 24 H 1.09003 * 109.54535 * 297.64290 * 13 11 2 25 25 H 1.08997 * 109.54456 * 57.91366 * 13 11 2 26 26 H 1.08995 * 109.54486 * 176.35659 * 16 14 13 27 27 H 1.08999 * 109.54237 * 296.62431 * 16 14 13 28 28 H 1.09001 * 109.47367 * 62.19933 * 17 16 14 29 29 H 1.08999 * 109.47206 * 182.20903 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.0468 1.2916 -0.5920 5 6 1.6907 2.2524 0.7610 6 7 0.9558 2.0298 1.8300 7 14 2.1160 4.0031 0.2678 8 1 1.5847 4.2774 -1.0915 9 1 3.5914 4.1724 0.2660 10 1 1.5107 4.9514 1.2371 11 6 2.1975 -1.2687 0.0006 12 1 3.2692 -1.0696 0.0000 13 6 1.8274 -2.0716 1.2512 14 16 2.6909 -3.6688 1.2069 15 8 2.2261 -4.4883 2.2707 16 6 2.1466 -4.3683 -0.3784 17 6 2.4920 -3.3867 -1.5024 18 6 1.8335 -2.0595 -1.2290 19 8 1.0097 -1.6276 -1.9991 20 1 -0.3633 -0.0939 -1.0234 21 1 -0.3633 -0.8394 0.5929 22 1 -0.3634 0.9331 0.4304 23 1 0.8007 1.1210 2.1313 24 1 2.1281 -1.5192 2.1415 25 1 0.7506 -2.2397 1.2711 26 1 2.6558 -5.3161 -0.5528 27 1 1.0691 -4.5308 -0.3545 28 1 3.5728 -3.2533 -1.5490 29 1 2.1332 -3.7817 -2.4528 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260632876.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:44 Heat of formation + Delta-G solvation = -75.379820 kcal Electronic energy + Delta-G solvation = -14834.013748 eV Core-core repulsion = 12269.806458 eV Total energy + Delta-G solvation = -2564.207291 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 231.072 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.82430 -37.54240 -36.97455 -34.86708 -33.53488 -30.96923 -28.20466 -26.59303 -25.26506 -23.17652 -20.39117 -19.46695 -18.37704 -17.26117 -16.85301 -16.55541 -16.23269 -15.97074 -15.48532 -15.29212 -14.98508 -14.68025 -14.31713 -13.77654 -13.51514 -13.04045 -12.94153 -12.66247 -12.56731 -12.43846 -12.37966 -11.89978 -11.51814 -11.24320 -10.77021 -10.24684 -9.35867 -8.89708 -8.19275 -5.60325 0.52038 1.00499 1.50135 1.60726 1.68754 1.86935 2.61000 2.72318 3.04310 3.22069 3.52358 3.76843 3.95654 4.07427 4.12241 4.21643 4.49163 4.63150 4.80110 4.86415 4.91932 5.02360 5.12224 5.18290 5.90883 6.34263 6.59357 7.03213 7.66848 8.15682 8.91803 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.038415 B = 0.008549 C = 0.007714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.716116 B = 3274.448496 C = 3628.867306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.130 3.870 2 N -0.593 5.593 3 C -0.367 4.367 4 H 0.059 0.941 5 C -0.064 4.064 6 N -0.928 5.928 7 Si 1.114 2.886 8 H -0.286 1.286 9 H -0.262 1.262 10 H -0.295 1.295 11 C 0.137 3.863 12 H 0.142 0.858 13 C -0.445 4.445 14 S 1.326 4.674 15 O -0.916 6.916 16 C -0.430 4.430 17 C -0.131 4.131 18 C 0.322 3.678 19 O -0.484 6.484 20 H 0.008 0.992 21 H 0.016 0.984 22 H 0.036 0.964 23 H 0.254 0.746 24 H 0.106 0.894 25 H 0.054 0.946 26 H 0.164 0.836 27 H 0.067 0.933 28 H 0.164 0.836 29 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.545 -11.243 -5.769 15.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 N -0.315 5.315 3 C -0.496 4.496 4 H 0.076 0.924 5 C -0.262 4.262 6 N -0.568 5.568 7 Si 0.938 3.062 8 H -0.213 1.213 9 H -0.187 1.187 10 H -0.222 1.222 11 C 0.028 3.972 12 H 0.159 0.841 13 C -0.583 4.583 14 S 1.524 4.476 15 O -0.911 6.911 16 C -0.568 4.568 17 C -0.170 4.170 18 C 0.197 3.803 19 O -0.358 6.358 20 H 0.027 0.973 21 H 0.035 0.965 22 H 0.054 0.946 23 H 0.064 0.936 24 H 0.125 0.875 25 H 0.073 0.927 26 H 0.182 0.818 27 H 0.086 0.914 28 H 0.181 0.819 29 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 9.441 -9.809 -5.086 14.533 hybrid contribution -2.801 -1.657 -0.056 3.255 sum 6.639 -11.466 -5.142 14.212 Atomic orbital electron populations 1.20874 0.85417 0.98579 0.96736 1.43800 1.00653 1.01572 1.85466 1.20132 1.12589 0.91673 1.25226 0.92355 1.27396 0.98613 1.07968 0.92270 1.70898 1.41857 1.23196 1.20805 0.82884 0.77145 0.71072 0.75086 1.21269 1.18685 1.22157 1.21005 1.00242 0.86013 0.89934 0.84111 1.28207 1.08525 1.16798 1.04740 1.69732 1.12491 0.83023 0.82362 1.92960 1.82488 1.65218 1.50475 1.27485 1.07917 1.08551 1.12869 1.21872 1.06189 0.89612 0.99308 1.26536 0.79259 0.88510 0.86037 1.90341 1.28521 1.70022 1.46896 0.97346 0.96507 0.94550 0.93621 0.87535 0.92709 0.81829 0.91421 0.81865 0.88000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.72 8.71 127.77 1.11 7.84 15 2 N -0.59 -29.32 2.24 -706.76 -1.59 -30.91 15 3 C -0.37 -19.68 9.28 84.03 0.78 -18.90 15 4 H 0.06 3.02 7.95 -2.91 -0.02 3.00 15 5 C -0.06 -3.54 4.75 84.86 0.40 -3.14 15 6 N -0.93 -55.89 12.34 21.65 0.27 -55.62 15 7 Si 1.11 49.50 29.99 68.60 2.06 51.56 15 8 H -0.29 -12.35 7.11 99.48 0.71 -11.65 15 9 H -0.26 -10.40 7.11 99.48 0.71 -9.70 15 10 H -0.30 -13.51 7.11 99.48 0.71 -12.80 15 11 C 0.14 4.94 2.75 44.29 0.12 5.06 15 12 H 0.14 4.14 7.89 -2.39 -0.02 4.12 15 13 C -0.44 -14.86 5.75 72.04 0.41 -14.45 15 14 S 1.33 29.04 13.65 -56.49 -0.77 28.27 15 15 O -0.92 -32.30 18.14 -148.98 -2.70 -35.01 15 16 C -0.43 -7.49 6.47 72.04 0.47 -7.02 15 17 C -0.13 -2.29 6.00 29.89 0.18 -2.11 15 18 C 0.32 10.33 6.19 29.07 0.18 10.51 15 19 O -0.48 -20.46 15.23 -1.43 -0.02 -20.48 15 20 H 0.01 0.44 6.92 -2.39 -0.02 0.43 15 21 H 0.02 0.81 6.41 -2.39 -0.02 0.79 15 22 H 0.04 2.07 5.82 -2.39 -0.01 2.06 15 23 H 0.25 15.66 7.38 -92.71 -0.68 14.97 15 24 H 0.11 3.91 8.14 -2.39 -0.02 3.89 15 25 H 0.05 2.12 6.61 -2.39 -0.02 2.10 15 26 H 0.16 1.62 8.14 -2.39 -0.02 1.60 15 27 H 0.07 1.53 8.14 -2.39 -0.02 1.51 15 28 H 0.16 1.19 8.14 -2.39 -0.02 1.17 15 29 H 0.10 1.71 8.12 -2.39 -0.02 1.69 15 Total: -1.00 -83.34 252.49 2.14 -81.21 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: 1.24 Total: 3.20 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: 3.66 Total: -22.21 kcal Atomic # 7 Polarization: -85.21 SS G_CDS: -1.32 Total: -86.53 kcal Atomic # 8 Polarization: -52.76 SS G_CDS: -2.72 Total: -55.49 kcal Atomic # 14 Polarization: 49.50 SS G_CDS: 2.06 Total: 51.56 kcal Atomic # 16 Polarization: 29.04 SS G_CDS: -0.77 Total: 28.27 kcal Total: -83.34 2.14 -81.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260632876.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.828 kcal (2) G-P(sol) polarization free energy of solvation -83.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds