Wall clock time and date at job start Mon Mar 30 2020 02:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36936 * 120.00233 * 2 1 4 4 H 1.07993 * 120.00178 * 142.40676 * 3 2 1 5 5 C 1.38813 * 119.99874 * 322.40416 * 3 2 1 6 6 N 1.31621 * 119.99993 * 157.34838 * 5 3 2 7 7 Si 1.86803 * 120.00288 * 337.35226 * 5 3 2 8 8 H 1.48500 * 109.47371 * 95.60750 * 7 5 3 9 9 H 1.48499 * 109.47120 * 215.60966 * 7 5 3 10 10 H 1.48507 * 109.46803 * 335.61034 * 7 5 3 11 11 C 1.46501 * 119.99621 * 179.97438 * 2 1 3 12 12 H 1.08994 * 109.47684 * 180.02562 * 11 2 1 13 13 C 1.53157 * 109.47882 * 60.00044 * 11 2 1 14 14 S 1.81614 * 109.03680 * 182.22095 * 13 11 2 15 15 O 1.42107 * 109.47506 * 172.65969 * 14 13 11 16 16 C 1.81618 * 102.56381 * 56.49348 * 14 13 11 17 17 C 1.53163 * 109.03369 * 303.50978 * 16 14 13 18 18 C 1.50653 * 109.43439 * 57.78704 * 17 16 14 19 19 O 1.20768 * 119.83779 * 117.50205 * 18 17 16 20 20 H 1.08996 * 109.47051 * 265.56322 * 1 2 3 21 21 H 1.08994 * 109.47263 * 145.56043 * 1 2 3 22 22 H 1.09007 * 109.46581 * 25.56091 * 1 2 3 23 23 H 0.96995 * 120.00160 * 180.02562 * 6 5 3 24 24 H 1.09001 * 109.54384 * 302.08652 * 13 11 2 25 25 H 1.09008 * 109.54439 * 62.35245 * 13 11 2 26 26 H 1.08996 * 109.54542 * 63.37832 * 16 14 13 27 27 H 1.09003 * 109.54694 * 183.64372 * 16 14 13 28 28 H 1.09001 * 109.48066 * 177.77842 * 17 16 14 29 29 H 1.09002 * 109.47457 * 297.79226 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.0616 1.2830 0.5705 5 6 1.6720 2.2632 -0.7334 6 7 2.0299 3.4885 -0.4124 7 14 0.5208 1.9742 -2.1759 8 1 -0.8858 2.1286 -1.7255 9 1 0.8094 2.9631 -3.2455 10 1 0.7237 0.6009 -2.7036 11 6 2.1975 -1.2688 0.0006 12 1 3.2691 -1.0698 0.0009 13 6 1.8276 -2.0726 -1.2495 14 16 2.6909 -3.6698 -1.2038 15 8 2.2263 -4.4901 -2.2671 16 6 2.1462 -4.3680 0.3818 17 6 2.4913 -3.3857 1.5051 18 6 1.8329 -2.0588 1.2305 19 8 1.0088 -1.6262 2.0000 20 1 -0.3633 -0.0795 1.0246 21 1 -0.3633 -0.8475 -0.5811 22 1 -0.3633 0.9272 -0.4434 23 1 1.6957 4.2413 -0.9247 24 1 0.7508 -2.2406 -1.2696 25 1 2.1285 -1.5208 -2.1402 26 1 1.0686 -4.5305 0.3578 27 1 2.6553 -5.3158 0.5571 28 1 2.1321 -3.7798 2.4558 29 1 3.5721 -3.2524 1.5520 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260632880.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:46 Heat of formation + Delta-G solvation = -37.383145 kcal Electronic energy + Delta-G solvation = -14868.611222 eV Core-core repulsion = 12306.051591 eV Total energy + Delta-G solvation = -2562.559631 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 231.072 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.43359 -35.80578 -35.61067 -33.54750 -32.00194 -29.97826 -26.39731 -25.34040 -24.13146 -21.53709 -18.99864 -17.48533 -16.86774 -15.96053 -15.77727 -15.25392 -15.11057 -14.46700 -14.28364 -13.80234 -13.43556 -12.88327 -12.58140 -12.46419 -12.27829 -12.16574 -11.67302 -11.39024 -11.29824 -10.86397 -10.59132 -10.10845 -9.97716 -9.69583 -9.28388 -8.52048 -8.21233 -6.93012 -6.10191 -3.52658 1.57010 2.30737 2.56811 3.26937 3.41270 3.45183 3.81553 4.22918 4.44029 4.79950 4.92780 4.95009 5.12080 5.23603 5.32831 5.41438 5.63103 5.77472 5.93860 6.17579 6.21177 6.34740 6.60938 6.86348 7.81212 7.96805 8.26625 8.82186 9.57481 9.96111 11.04277 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.033992 B = 0.009948 C = 0.008610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.528293 B = 2813.906675 C = 3251.170636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.583 5.583 3 C -0.277 4.277 4 H 0.084 0.916 5 C 0.042 3.958 6 N -0.892 5.892 7 Si 0.880 3.120 8 H -0.287 1.287 9 H -0.300 1.300 10 H -0.269 1.269 11 C 0.155 3.845 12 H 0.120 0.880 13 C -0.443 4.443 14 S 1.231 4.769 15 O -0.861 6.861 16 C -0.434 4.434 17 C -0.145 4.145 18 C 0.321 3.679 19 O -0.431 6.431 20 H 0.033 0.967 21 H 0.021 0.979 22 H 0.048 0.952 23 H 0.265 0.735 24 H 0.084 0.916 25 H 0.126 0.874 26 H 0.085 0.915 27 H 0.119 0.881 28 H 0.089 0.911 29 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.587 -13.264 1.235 14.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.305 5.305 3 C -0.405 4.405 4 H 0.101 0.899 5 C -0.160 4.160 6 N -0.532 5.532 7 Si 0.710 3.290 8 H -0.215 1.215 9 H -0.227 1.227 10 H -0.194 1.194 11 C 0.044 3.956 12 H 0.138 0.862 13 C -0.583 4.583 14 S 1.429 4.571 15 O -0.855 6.855 16 C -0.571 4.571 17 C -0.185 4.185 18 C 0.191 3.809 19 O -0.301 6.301 20 H 0.051 0.949 21 H 0.040 0.960 22 H 0.066 0.934 23 H 0.075 0.925 24 H 0.103 0.897 25 H 0.144 0.856 26 H 0.103 0.897 27 H 0.137 0.863 28 H 0.107 0.893 29 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.711 -13.230 0.921 14.074 hybrid contribution -3.047 -0.320 -0.835 3.175 sum 1.665 -13.550 0.086 13.652 Atomic orbital electron populations 1.21387 0.84378 0.98643 0.99141 1.43878 1.00804 1.00662 1.85131 1.18785 1.10115 0.86606 1.25017 0.89863 1.25445 0.97859 0.95145 0.97557 1.69864 1.46137 0.97855 1.39364 0.86914 0.80359 0.77917 0.83847 1.21462 1.22741 1.19363 1.20563 0.99559 0.87005 0.88487 0.86199 1.28289 1.10067 1.13640 1.06332 1.70418 1.16012 0.87063 0.83596 1.93082 1.81827 1.63991 1.46649 1.27476 1.08354 1.06767 1.14521 1.21857 1.03696 0.93876 0.99040 1.26050 0.80361 0.86661 0.87797 1.90356 1.26183 1.68027 1.45530 0.94857 0.96022 0.93405 0.92464 0.89692 0.85572 0.89655 0.86298 0.89252 0.87209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.50 8.29 59.85 0.50 3.00 15 2 N -0.58 -13.44 2.16 -174.74 -0.38 -13.82 15 3 C -0.28 -7.38 9.82 -15.06 -0.15 -7.53 15 4 H 0.08 2.32 8.06 -52.49 -0.42 1.90 15 5 C 0.04 1.17 5.27 -17.43 -0.09 1.08 15 6 N -0.89 -26.45 13.97 55.49 0.78 -25.67 15 7 Si 0.88 21.93 25.07 -169.99 -4.26 17.67 15 8 H -0.29 -7.13 6.68 56.52 0.38 -6.75 15 9 H -0.30 -7.53 7.11 56.52 0.40 -7.13 15 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 15 11 C 0.15 2.66 2.75 -69.02 -0.19 2.47 15 12 H 0.12 1.72 7.89 -51.93 -0.41 1.31 15 13 C -0.44 -6.87 5.75 37.24 0.21 -6.66 15 14 S 1.23 14.10 13.65 -107.50 -1.47 12.63 15 15 O -0.86 -15.22 18.14 -35.23 -0.64 -15.86 15 16 C -0.43 -4.41 6.46 37.24 0.24 -4.17 15 17 C -0.14 -1.50 6.00 -27.82 -0.17 -1.67 15 18 C 0.32 5.12 6.19 -29.08 -0.18 4.94 15 19 O -0.43 -8.74 15.25 5.99 0.09 -8.65 15 20 H 0.03 0.78 6.96 -51.93 -0.36 0.42 15 21 H 0.02 0.45 6.41 -51.93 -0.33 0.11 15 22 H 0.05 1.17 3.53 -51.93 -0.18 0.99 15 23 H 0.27 7.46 8.31 -40.82 -0.34 7.12 15 24 H 0.08 1.46 6.61 -51.93 -0.34 1.12 15 25 H 0.13 2.05 8.14 -51.92 -0.42 1.63 15 26 H 0.08 1.02 8.14 -51.93 -0.42 0.60 15 27 H 0.12 0.91 8.14 -51.93 -0.42 0.49 15 28 H 0.09 0.92 8.12 -51.93 -0.42 0.50 15 29 H 0.11 0.71 8.14 -51.93 -0.42 0.29 15 LS Contribution 248.11 15.07 3.74 3.74 Total: -1.00 -36.73 248.11 -5.29 -42.02 By element: Atomic # 1 Polarization: -0.18 SS G_CDS: -3.32 Total: -3.51 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 0.17 Total: -8.55 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.40 Total: -39.50 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.55 Total: -24.51 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.26 Total: 17.67 kcal Atomic # 16 Polarization: 14.10 SS G_CDS: -1.47 Total: 12.63 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -36.73 -5.29 -42.02 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260632880.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.637 kcal (2) G-P(sol) polarization free energy of solvation -36.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds