Wall clock time and date at job start Mon Mar 30 2020 02:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36936 * 120.00233 * 2 1 4 4 H 1.07993 * 120.00178 * 142.40676 * 3 2 1 5 5 C 1.38813 * 119.99874 * 322.40416 * 3 2 1 6 6 N 1.31621 * 119.99993 * 157.34838 * 5 3 2 7 7 Si 1.86803 * 120.00288 * 337.35226 * 5 3 2 8 8 H 1.48500 * 109.47371 * 95.60750 * 7 5 3 9 9 H 1.48499 * 109.47120 * 215.60966 * 7 5 3 10 10 H 1.48507 * 109.46803 * 335.61034 * 7 5 3 11 11 C 1.46501 * 119.99621 * 179.97438 * 2 1 3 12 12 H 1.08994 * 109.47684 * 180.02562 * 11 2 1 13 13 C 1.53157 * 109.47882 * 60.00044 * 11 2 1 14 14 S 1.81614 * 109.03680 * 182.22095 * 13 11 2 15 15 O 1.42107 * 109.47506 * 172.65969 * 14 13 11 16 16 C 1.81618 * 102.56381 * 56.49348 * 14 13 11 17 17 C 1.53163 * 109.03369 * 303.50978 * 16 14 13 18 18 C 1.50653 * 109.43439 * 57.78704 * 17 16 14 19 19 O 1.20768 * 119.83779 * 117.50205 * 18 17 16 20 20 H 1.08996 * 109.47051 * 265.56322 * 1 2 3 21 21 H 1.08994 * 109.47263 * 145.56043 * 1 2 3 22 22 H 1.09007 * 109.46581 * 25.56091 * 1 2 3 23 23 H 0.96995 * 120.00160 * 180.02562 * 6 5 3 24 24 H 1.09001 * 109.54384 * 302.08652 * 13 11 2 25 25 H 1.09008 * 109.54439 * 62.35245 * 13 11 2 26 26 H 1.08996 * 109.54542 * 63.37832 * 16 14 13 27 27 H 1.09003 * 109.54694 * 183.64372 * 16 14 13 28 28 H 1.09001 * 109.48066 * 177.77842 * 17 16 14 29 29 H 1.09002 * 109.47457 * 297.79226 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.0616 1.2830 0.5705 5 6 1.6720 2.2632 -0.7334 6 7 2.0299 3.4885 -0.4124 7 14 0.5208 1.9742 -2.1759 8 1 -0.8858 2.1286 -1.7255 9 1 0.8094 2.9631 -3.2455 10 1 0.7237 0.6009 -2.7036 11 6 2.1975 -1.2688 0.0006 12 1 3.2691 -1.0698 0.0009 13 6 1.8276 -2.0726 -1.2495 14 16 2.6909 -3.6698 -1.2038 15 8 2.2263 -4.4901 -2.2671 16 6 2.1462 -4.3680 0.3818 17 6 2.4913 -3.3857 1.5051 18 6 1.8329 -2.0588 1.2305 19 8 1.0088 -1.6262 2.0000 20 1 -0.3633 -0.0795 1.0246 21 1 -0.3633 -0.8475 -0.5811 22 1 -0.3633 0.9272 -0.4434 23 1 1.6957 4.2413 -0.9247 24 1 0.7508 -2.2406 -1.2696 25 1 2.1285 -1.5208 -2.1402 26 1 1.0686 -4.5305 0.3578 27 1 2.6553 -5.3158 0.5571 28 1 2.1321 -3.7798 2.4558 29 1 3.5721 -3.2524 1.5520 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260632880.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:46 Heat of formation + Delta-G solvation = -66.720787 kcal Electronic energy + Delta-G solvation = -14869.883398 eV Core-core repulsion = 12306.051591 eV Total energy + Delta-G solvation = -2563.831807 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 231.072 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.79978 -37.47288 -36.91960 -34.77640 -33.79080 -31.49786 -28.21295 -26.66446 -25.54505 -23.07194 -20.29393 -19.12408 -18.26965 -17.55094 -17.18858 -16.61284 -16.19218 -15.95599 -15.73771 -15.05860 -14.84069 -14.48399 -14.33944 -14.23328 -13.66940 -13.44954 -13.11712 -12.67897 -12.55305 -12.46993 -12.31434 -12.10289 -11.68646 -11.19251 -10.93073 -10.30330 -9.29517 -8.78644 -8.24067 -5.62454 0.56618 1.05828 1.26544 1.36443 1.46330 1.55481 2.38112 2.74248 2.93090 3.14548 3.36892 3.80725 4.00945 4.11148 4.16713 4.25841 4.42290 4.64847 4.68703 4.85388 4.97240 4.97986 5.11077 5.22581 5.87632 6.13671 6.63196 6.91083 7.53817 7.98341 8.94361 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.033992 B = 0.009948 C = 0.008610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.528293 B = 2813.906675 C = 3251.170636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.601 5.601 3 C -0.260 4.260 4 H 0.064 0.936 5 C -0.011 4.011 6 N -0.940 5.940 7 Si 0.933 3.067 8 H -0.290 1.290 9 H -0.303 1.303 10 H -0.258 1.258 11 C 0.140 3.860 12 H 0.151 0.849 13 C -0.454 4.454 14 S 1.325 4.675 15 O -0.915 6.915 16 C -0.430 4.430 17 C -0.132 4.132 18 C 0.323 3.677 19 O -0.482 6.482 20 H 0.023 0.977 21 H 0.039 0.961 22 H 0.030 0.970 23 H 0.264 0.736 24 H 0.063 0.937 25 H 0.117 0.883 26 H 0.069 0.931 27 H 0.161 0.839 28 H 0.100 0.900 29 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.772 -16.251 1.370 17.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.324 5.324 3 C -0.389 4.389 4 H 0.081 0.919 5 C -0.209 4.209 6 N -0.583 5.583 7 Si 0.762 3.238 8 H -0.218 1.218 9 H -0.232 1.232 10 H -0.182 1.182 11 C 0.031 3.969 12 H 0.168 0.832 13 C -0.592 4.592 14 S 1.523 4.477 15 O -0.910 6.910 16 C -0.568 4.568 17 C -0.171 4.171 18 C 0.197 3.803 19 O -0.356 6.356 20 H 0.041 0.959 21 H 0.058 0.942 22 H 0.048 0.952 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.135 0.865 26 H 0.088 0.912 27 H 0.179 0.821 28 H 0.119 0.881 29 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 5.902 -16.251 1.026 17.320 hybrid contribution -3.362 0.452 -0.745 3.473 sum 2.540 -15.799 0.281 16.004 Atomic orbital electron populations 1.21298 0.84943 0.98398 0.98656 1.43952 1.00816 1.01818 1.85826 1.18785 1.08839 0.88151 1.23142 0.91882 1.25965 1.00016 0.95023 0.99856 1.69970 1.48847 0.98643 1.40839 0.86045 0.78564 0.78014 0.81169 1.21762 1.23164 1.18167 1.21003 1.00682 0.85099 0.90133 0.83211 1.28275 1.09230 1.16866 1.04816 1.69833 1.12418 0.83168 0.82314 1.92969 1.82459 1.65170 1.50435 1.27480 1.08030 1.08441 1.12859 1.21866 1.06211 0.89658 0.99316 1.26463 0.79329 0.88467 0.86023 1.90363 1.28549 1.69829 1.46862 0.95914 0.94201 0.95209 0.92687 0.91774 0.86493 0.91182 0.82104 0.88131 0.81925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 5.17 8.29 127.77 1.06 6.23 15 2 N -0.60 -27.55 2.16 -706.76 -1.52 -29.07 15 3 C -0.26 -14.01 9.82 84.03 0.83 -13.18 15 4 H 0.06 3.59 8.06 -2.91 -0.02 3.56 15 5 C -0.01 -0.63 5.27 84.86 0.45 -0.18 15 6 N -0.94 -57.32 13.97 21.65 0.30 -57.02 15 7 Si 0.93 46.13 25.07 68.60 1.72 47.85 15 8 H -0.29 -14.29 6.68 99.48 0.66 -13.63 15 9 H -0.30 -15.03 7.11 99.48 0.71 -14.32 15 10 H -0.26 -12.08 7.11 99.48 0.71 -11.37 15 11 C 0.14 4.52 2.75 44.28 0.12 4.64 15 12 H 0.15 3.86 7.89 -2.39 -0.02 3.84 15 13 C -0.45 -13.18 5.75 72.03 0.41 -12.77 15 14 S 1.32 25.19 13.65 -56.49 -0.77 24.42 15 15 O -0.91 -29.63 18.14 -148.98 -2.70 -32.33 15 16 C -0.43 -6.47 6.46 72.04 0.47 -6.01 15 17 C -0.13 -2.03 6.00 29.89 0.18 -1.85 15 18 C 0.32 9.47 6.19 29.07 0.18 9.65 15 19 O -0.48 -19.12 15.25 -1.47 -0.02 -19.14 15 20 H 0.02 1.08 6.96 -2.39 -0.02 1.07 15 21 H 0.04 1.65 6.41 -2.39 -0.02 1.64 15 22 H 0.03 1.47 3.53 -2.38 -0.01 1.46 15 23 H 0.26 15.34 8.31 -92.71 -0.77 14.57 15 24 H 0.06 2.12 6.61 -2.39 -0.02 2.11 15 25 H 0.12 3.62 8.14 -2.38 -0.02 3.60 15 26 H 0.07 1.39 8.14 -2.39 -0.02 1.37 15 27 H 0.16 1.32 8.14 -2.39 -0.02 1.30 15 28 H 0.10 1.53 8.12 -2.39 -0.02 1.51 15 29 H 0.16 0.92 8.14 -2.39 -0.02 0.90 15 Total: -1.00 -82.97 248.11 1.81 -81.17 By element: Atomic # 1 Polarization: -3.52 SS G_CDS: 1.11 Total: -2.41 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: 3.69 Total: -13.47 kcal Atomic # 7 Polarization: -84.87 SS G_CDS: -1.22 Total: -86.09 kcal Atomic # 8 Polarization: -48.75 SS G_CDS: -2.73 Total: -51.47 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.72 Total: 47.85 kcal Atomic # 16 Polarization: 25.19 SS G_CDS: -0.77 Total: 24.42 kcal Total: -82.97 1.81 -81.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260632880.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.446 kcal (2) G-P(sol) polarization free energy of solvation -82.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds