Wall clock time and date at job start Mon Mar 30 2020 02:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00099 * 2 1 4 4 H 1.48505 * 109.46793 * 269.99651 * 3 2 1 5 5 H 1.48497 * 109.47092 * 29.99329 * 3 2 1 6 6 H 1.48495 * 109.47147 * 149.99752 * 3 2 1 7 7 C 1.37876 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99795 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99848 * 180.02562 * 7 2 1 10 10 C 1.50702 * 109.46792 * 180.02562 * 9 7 2 11 11 C 1.37995 * 120.59226 * 94.97903 * 10 9 7 12 12 N 1.32451 * 120.13933 * 180.02562 * 11 10 9 13 13 C 1.33163 * 121.44454 * 359.97332 * 12 11 10 14 14 N 1.33851 * 119.23542 * 180.02562 * 13 12 11 15 15 C 1.31410 * 121.09363 * 180.02562 * 14 13 12 16 16 C 1.39991 * 120.24133 * 359.97438 * 15 14 13 17 17 C 1.35778 * 119.17613 * 359.97438 * 16 15 14 18 18 N 1.36345 * 119.18163 * 0.02562 * 17 16 15 19 19 C 1.34919 * 119.75147 * 180.02562 * 18 17 16 20 20 O 1.22065 * 120.55265 * 0.02562 * 19 18 17 21 21 H 0.97008 * 119.99525 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47353 * 60.00270 * 9 7 2 23 23 H 1.08997 * 109.46866 * 299.99464 * 9 7 2 24 24 H 1.07996 * 119.93572 * 359.97438 * 11 10 9 25 25 H 1.07998 * 119.87700 * 179.97438 * 15 14 13 26 26 H 1.07995 * 120.40845 * 180.02562 * 16 15 14 27 27 H 1.08007 * 120.40743 * 180.29463 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0137 -2.6149 0.0010 11 6 4.3455 -3.2425 -1.1824 12 7 4.7855 -4.4917 -1.1721 13 6 4.9202 -5.1714 -0.0350 14 7 5.3694 -6.4316 -0.0760 15 6 5.5158 -7.1361 1.0237 16 6 5.2020 -6.5751 2.2673 17 6 4.7464 -5.2972 2.3210 18 7 4.6054 -4.5924 1.1624 19 6 4.1542 -3.3215 1.2025 20 8 3.8713 -2.7968 2.2676 21 1 -0.4850 0.8402 -0.0004 22 1 3.8745 -0.6801 0.8911 23 1 3.8751 -0.6805 -0.8889 24 1 4.2453 -2.7142 -2.1190 25 1 5.8794 -8.1514 0.9677 26 1 5.3216 -7.1514 3.1728 27 1 4.5029 -4.8431 3.2702 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261289117.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:28 Heat of formation + Delta-G solvation = 64.331273 kcal Electronic energy + Delta-G solvation = -15352.571468 eV Core-core repulsion = 12691.271305 eV Total energy + Delta-G solvation = -2661.300163 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.075 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.59907 -38.81090 -37.15232 -34.81354 -33.43476 -31.98914 -30.90881 -28.01407 -25.38357 -24.97020 -23.22878 -21.80679 -19.27586 -18.37372 -18.18764 -16.93957 -16.38889 -15.77622 -15.31043 -14.67530 -14.24429 -13.73845 -13.69252 -13.33971 -12.74599 -12.33586 -12.07886 -11.70842 -11.40680 -10.99651 -10.60862 -10.46481 -10.15419 -9.84335 -9.60727 -9.42733 -9.27637 -8.54794 -7.31146 -6.04426 -4.02929 0.08794 0.54258 2.15944 2.19412 2.81660 3.31365 3.39155 3.43753 3.50958 4.10785 4.24945 4.32263 4.44857 4.54809 4.91539 5.08524 5.28543 5.36708 5.45877 5.75363 5.85294 6.14659 6.55815 6.74290 6.99596 7.17010 7.27785 7.69308 8.02733 8.17257 8.50352 8.97387 9.55235 11.08823 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.047650 B = 0.007118 C = 0.006743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.475922 B = 3932.800073 C = 4151.185125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.070 3.930 3 Si 0.879 3.121 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.508 4.508 8 H 0.069 0.931 9 C 0.044 3.956 10 C -0.203 4.203 11 C 0.146 3.854 12 N -0.505 5.505 13 C 0.496 3.504 14 N -0.467 5.467 15 C 0.217 3.783 16 C -0.248 4.248 17 C 0.159 3.841 18 N -0.466 5.466 19 C 0.507 3.493 20 O -0.508 6.508 21 H 0.264 0.736 22 H 0.037 0.963 23 H 0.030 0.970 24 H 0.176 0.824 25 H 0.185 0.815 26 H 0.166 0.834 27 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.512 -13.306 3.825 18.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.706 3.294 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.546 4.546 8 H 0.087 0.913 9 C 0.005 3.995 10 C -0.210 4.210 11 C 0.002 3.998 12 N -0.230 5.230 13 C 0.147 3.853 14 N -0.181 5.181 15 C 0.029 3.971 16 C -0.272 4.272 17 C 0.027 3.973 18 N -0.177 5.177 19 C 0.310 3.690 20 O -0.383 6.383 21 H 0.074 0.926 22 H 0.055 0.945 23 H 0.048 0.952 24 H 0.193 0.807 25 H 0.202 0.798 26 H 0.183 0.817 27 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 12.419 -13.073 2.662 18.227 hybrid contribution -0.196 1.451 1.559 2.139 sum 12.223 -11.622 4.220 17.386 Atomic orbital electron populations 1.69900 1.06265 1.26963 1.50810 1.24955 0.94751 0.99013 0.94429 0.86787 0.80541 0.83553 0.78566 1.20047 1.21195 1.18852 1.20858 0.88067 0.94527 1.51178 0.91332 1.18430 0.97307 0.85895 0.97825 1.22158 1.06401 1.02164 0.90307 1.22839 0.89887 0.87983 0.99078 1.68457 1.24080 1.10045 1.20427 1.21469 0.92916 0.90539 0.80413 1.68605 1.16617 1.02521 1.30336 1.23674 0.87035 0.99432 0.86933 1.21851 1.08543 0.95495 1.01355 1.22877 0.89767 0.92198 0.92444 1.45693 1.47463 1.15962 1.08609 1.17400 0.79944 0.78967 0.92674 1.90968 1.49915 1.65925 1.31541 0.92606 0.94496 0.95174 0.80693 0.79772 0.81684 0.79626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.28 13.96 55.43 0.77 -27.51 15 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 15 3 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 15 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 15 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 15 6 H -0.26 -6.41 6.54 56.52 0.37 -6.04 15 7 C -0.51 -14.99 9.65 -34.44 -0.33 -15.32 15 8 H 0.07 2.22 7.98 -52.49 -0.42 1.80 15 9 C 0.04 1.09 3.95 -29.03 -0.11 0.98 15 10 C -0.20 -4.49 5.13 -104.02 -0.53 -5.02 15 11 C 0.15 2.82 10.90 -17.37 -0.19 2.63 15 12 N -0.51 -9.50 10.45 -14.02 -0.15 -9.65 15 13 C 0.50 8.49 8.28 -322.63 -2.67 5.82 15 14 N -0.47 -6.48 10.46 -13.73 -0.14 -6.63 15 15 C 0.22 1.84 11.27 -17.08 -0.19 1.65 15 16 C -0.25 -1.92 10.07 -39.81 -0.40 -2.32 15 17 C 0.16 1.92 10.17 -16.43 -0.17 1.75 15 18 N -0.47 -7.92 2.76 -67.05 -0.19 -8.11 15 19 C 0.51 10.81 7.35 -15.50 -0.11 10.69 15 20 O -0.51 -12.06 15.98 4.86 0.08 -11.98 15 21 H 0.26 7.72 8.31 -40.82 -0.34 7.38 15 22 H 0.04 0.97 6.85 -51.93 -0.36 0.61 15 23 H 0.03 0.70 7.49 -51.93 -0.39 0.31 15 24 H 0.18 2.96 8.06 -52.49 -0.42 2.54 15 25 H 0.19 0.65 8.06 -52.49 -0.42 0.23 15 26 H 0.17 0.56 8.06 -52.49 -0.42 0.13 15 27 H 0.19 2.00 7.40 -52.48 -0.39 1.61 15 LS Contribution 246.29 15.07 3.71 3.71 Total: -1.00 -36.96 246.29 -7.38 -44.34 By element: Atomic # 1 Polarization: -2.33 SS G_CDS: -1.99 Total: -4.31 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: -4.81 Total: 2.85 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: 0.30 Total: -51.89 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.08 Total: -11.98 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -36.96 -7.38 -44.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261289117.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.674 kcal (2) G-P(sol) polarization free energy of solvation -36.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds