Wall clock time and date at job start Mon Mar 30 2020 02:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00099 * 2 1 4 4 H 1.48505 * 109.46793 * 269.99651 * 3 2 1 5 5 H 1.48497 * 109.47092 * 29.99329 * 3 2 1 6 6 H 1.48495 * 109.47147 * 149.99752 * 3 2 1 7 7 C 1.37876 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99795 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99848 * 180.02562 * 7 2 1 10 10 C 1.50702 * 109.46792 * 180.02562 * 9 7 2 11 11 C 1.37995 * 120.59226 * 94.97903 * 10 9 7 12 12 N 1.32451 * 120.13933 * 180.02562 * 11 10 9 13 13 C 1.33163 * 121.44454 * 359.97332 * 12 11 10 14 14 N 1.33851 * 119.23542 * 180.02562 * 13 12 11 15 15 C 1.31410 * 121.09363 * 180.02562 * 14 13 12 16 16 C 1.39991 * 120.24133 * 359.97438 * 15 14 13 17 17 C 1.35778 * 119.17613 * 359.97438 * 16 15 14 18 18 N 1.36345 * 119.18163 * 0.02562 * 17 16 15 19 19 C 1.34919 * 119.75147 * 180.02562 * 18 17 16 20 20 O 1.22065 * 120.55265 * 0.02562 * 19 18 17 21 21 H 0.97008 * 119.99525 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47353 * 60.00270 * 9 7 2 23 23 H 1.08997 * 109.46866 * 299.99464 * 9 7 2 24 24 H 1.07996 * 119.93572 * 359.97438 * 11 10 9 25 25 H 1.07998 * 119.87700 * 179.97438 * 15 14 13 26 26 H 1.07995 * 120.40845 * 180.02562 * 16 15 14 27 27 H 1.08007 * 120.40743 * 180.29463 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0137 -2.6149 0.0010 11 6 4.3455 -3.2425 -1.1824 12 7 4.7855 -4.4917 -1.1721 13 6 4.9202 -5.1714 -0.0350 14 7 5.3694 -6.4316 -0.0760 15 6 5.5158 -7.1361 1.0237 16 6 5.2020 -6.5751 2.2673 17 6 4.7464 -5.2972 2.3210 18 7 4.6054 -4.5924 1.1624 19 6 4.1542 -3.3215 1.2025 20 8 3.8713 -2.7968 2.2676 21 1 -0.4850 0.8402 -0.0004 22 1 3.8745 -0.6801 0.8911 23 1 3.8751 -0.6805 -0.8889 24 1 4.2453 -2.7142 -2.1190 25 1 5.8794 -8.1514 0.9677 26 1 5.3216 -7.1514 3.1728 27 1 4.5029 -4.8431 3.2702 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261289117.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:28 Heat of formation + Delta-G solvation = 37.919295 kcal Electronic energy + Delta-G solvation = -15353.716777 eV Core-core repulsion = 12691.271305 eV Total energy + Delta-G solvation = -2662.445473 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.075 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.88160 -40.11730 -38.55256 -36.12453 -35.31291 -33.60003 -32.34828 -29.68113 -26.67045 -26.35840 -24.58319 -23.64138 -20.53419 -19.68473 -19.40154 -19.06056 -17.84517 -16.90643 -16.50245 -16.42571 -15.59434 -15.20021 -15.07795 -14.89442 -14.26026 -13.90084 -13.62641 -13.49737 -12.77766 -12.65873 -12.47254 -12.05177 -11.77987 -11.64484 -11.31917 -10.82697 -10.76367 -10.69896 -8.83663 -8.31624 -6.36016 -0.98253 -0.63045 0.82653 0.91156 1.33674 1.37758 1.50216 1.68700 2.34911 2.40437 2.75014 3.02246 3.13577 3.38216 3.55842 3.91764 4.10616 4.26148 4.32041 4.44247 4.71423 4.95524 5.04276 5.17823 5.36364 5.43678 5.56133 6.02681 6.21524 6.53937 6.67119 6.86601 7.26271 8.85615 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.047650 B = 0.007118 C = 0.006743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.475922 B = 3932.800073 C = 4151.185125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.006 3.994 3 Si 0.955 3.045 4 H -0.251 1.251 5 H -0.282 1.282 6 H -0.255 1.255 7 C -0.516 4.516 8 H 0.017 0.983 9 C 0.058 3.942 10 C -0.276 4.276 11 C 0.185 3.815 12 N -0.539 5.539 13 C 0.507 3.493 14 N -0.496 5.496 15 C 0.243 3.757 16 C -0.191 4.191 17 C 0.112 3.888 18 N -0.466 5.466 19 C 0.501 3.499 20 O -0.557 6.557 21 H 0.268 0.732 22 H 0.017 0.983 23 H 0.049 0.951 24 H 0.193 0.807 25 H 0.251 0.749 26 H 0.228 0.772 27 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.210 -15.989 4.343 22.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.191 4.191 3 Si 0.777 3.223 4 H -0.176 1.176 5 H -0.207 1.207 6 H -0.179 1.179 7 C -0.554 4.554 8 H 0.035 0.965 9 C 0.019 3.981 10 C -0.284 4.284 11 C 0.037 3.963 12 N -0.265 5.265 13 C 0.158 3.842 14 N -0.212 5.212 15 C 0.060 3.940 16 C -0.213 4.213 17 C -0.017 4.017 18 N -0.175 5.175 19 C 0.306 3.694 20 O -0.438 6.438 21 H 0.077 0.923 22 H 0.036 0.964 23 H 0.067 0.933 24 H 0.210 0.790 25 H 0.267 0.733 26 H 0.245 0.755 27 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 15.163 -15.876 3.234 22.191 hybrid contribution -0.921 1.726 1.497 2.464 sum 14.241 -14.150 4.732 20.626 Atomic orbital electron populations 1.70066 1.08307 1.28298 1.52511 1.26005 0.95710 1.03528 0.93844 0.85599 0.79111 0.77742 0.79871 1.17565 1.20748 1.17854 1.21128 0.90904 0.92659 1.50719 0.96469 1.18101 0.93969 0.88550 0.97450 1.21799 1.12628 1.01841 0.92130 1.23035 0.86439 0.88078 0.98706 1.68531 1.26598 1.09776 1.21611 1.22002 0.90697 0.91429 0.80091 1.68846 1.18651 1.00930 1.32773 1.24976 0.82499 1.00932 0.85561 1.22668 1.02192 0.92977 1.03483 1.23480 0.92855 0.94126 0.91269 1.45505 1.46570 1.15014 1.10379 1.17267 0.79935 0.80325 0.91859 1.90902 1.52817 1.67403 1.32643 0.92315 0.96450 0.93301 0.79034 0.73289 0.75520 0.79160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.54 13.96 21.45 0.30 -62.24 15 2 C 0.01 0.35 5.47 84.65 0.46 0.81 15 3 Si 0.95 46.53 27.47 68.60 1.88 48.42 15 4 H -0.25 -11.25 7.11 99.48 0.71 -10.55 15 5 H -0.28 -13.42 7.11 99.48 0.71 -12.71 15 6 H -0.25 -11.94 6.54 99.48 0.65 -11.29 15 7 C -0.52 -32.36 9.65 25.60 0.25 -32.12 15 8 H 0.02 1.20 7.98 -2.91 -0.02 1.17 15 9 C 0.06 3.03 3.95 29.10 0.12 3.14 15 10 C -0.28 -12.90 5.13 -19.47 -0.10 -13.00 15 11 C 0.18 7.34 10.90 84.54 0.92 8.26 15 12 N -0.54 -20.21 10.45 -198.26 -2.07 -22.28 15 13 C 0.51 16.75 8.28 261.43 2.16 18.91 15 14 N -0.50 -11.91 10.46 -197.36 -2.06 -13.98 15 15 C 0.24 2.52 11.27 85.18 0.96 3.48 15 16 C -0.19 -1.76 10.07 22.12 0.22 -1.53 15 17 C 0.11 2.46 10.17 83.42 0.85 3.31 15 18 N -0.47 -15.77 2.76 -484.03 -1.34 -17.11 15 19 C 0.50 22.51 7.35 84.67 0.62 23.13 15 20 O -0.56 -28.30 15.98 -5.53 -0.09 -28.39 15 21 H 0.27 16.28 8.31 -92.70 -0.77 15.51 15 22 H 0.02 0.95 6.85 -2.39 -0.02 0.94 15 23 H 0.05 2.30 7.49 -2.39 -0.02 2.29 15 24 H 0.19 6.59 8.06 -2.91 -0.02 6.57 15 25 H 0.25 -0.59 8.06 -2.91 -0.02 -0.61 15 26 H 0.23 -0.54 8.06 -2.91 -0.02 -0.57 15 27 H 0.19 3.94 7.40 -2.91 -0.02 3.91 15 Total: -1.00 -90.75 246.29 4.23 -86.52 By element: Atomic # 1 Polarization: -6.48 SS G_CDS: 1.14 Total: -5.33 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: 6.46 Total: 14.40 kcal Atomic # 7 Polarization: -110.43 SS G_CDS: -5.18 Total: -115.61 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.09 Total: -28.39 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.88 Total: 48.42 kcal Total: -90.75 4.23 -86.52 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261289117.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.440 kcal (2) G-P(sol) polarization free energy of solvation -90.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds