Wall clock time and date at job start Mon Mar 30 2020 02:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34232 * 117.00006 * 2 1 4 4 O 1.20826 * 120.00008 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00071 * 180.27412 * 3 2 1 6 6 H 1.09001 * 109.57945 * 29.72577 * 5 3 2 7 7 C 1.53241 * 109.58216 * 149.99454 * 5 3 2 8 8 N 1.46372 * 109.48779 * 177.45218 * 7 5 3 9 9 C 1.36930 * 119.65143 * 114.93835 * 8 7 5 10 10 H 1.08008 * 119.99774 * 28.05088 * 9 8 7 11 11 C 1.38813 * 120.00468 * 208.06227 * 9 8 7 12 12 N 1.31625 * 119.99740 * 19.21048 * 11 9 8 13 13 Si 1.86799 * 120.00207 * 199.21987 * 11 9 8 14 14 H 1.48498 * 109.47322 * 89.99617 * 13 11 9 15 15 H 1.48505 * 109.46896 * 209.99447 * 13 11 9 16 16 H 1.48500 * 109.46972 * 329.99239 * 13 11 9 17 17 C 1.46378 * 120.70331 * 294.91049 * 8 7 5 18 18 C 1.53245 * 109.48491 * 65.09274 * 17 8 7 19 19 S 1.81741 * 109.58320 * 269.44781 * 5 3 2 20 20 H 1.09004 * 109.47482 * 60.00184 * 1 2 3 21 21 H 1.08998 * 109.47374 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47258 * 300.00101 * 1 2 3 23 23 H 1.09003 * 109.47049 * 297.46149 * 7 5 3 24 24 H 1.09001 * 109.46508 * 57.45056 * 7 5 3 25 25 H 0.97000 * 119.99398 * 180.02562 * 12 11 9 26 26 H 1.09008 * 109.46674 * 185.08969 * 17 8 7 27 27 H 1.08995 * 109.47544 * 305.08522 * 17 8 7 28 28 H 1.08989 * 109.58787 * 62.13729 * 18 17 8 29 29 H 1.09004 * 109.57920 * 182.41013 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0062 6 1 3.9756 0.4045 -0.5191 7 6 4.0107 2.5519 -0.7274 8 7 5.4698 2.6573 -0.6793 9 6 6.1926 2.5890 -1.8403 10 1 5.7486 2.9068 -2.7722 11 6 7.4957 2.1111 -1.8196 12 7 7.9141 1.3844 -0.8050 13 14 8.6555 2.4995 -3.2315 14 1 9.3785 3.7644 -2.9446 15 1 9.6347 1.3938 -3.3861 16 1 7.8753 2.6487 -4.4862 17 6 6.1646 2.8356 0.5967 18 6 5.9629 1.5904 1.4669 19 16 4.1810 1.3196 1.7035 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 3.6831 2.5152 -1.7664 24 1 3.5675 3.4188 -0.2372 25 1 8.8248 1.0508 -0.7905 26 1 7.2291 2.9820 0.4133 27 1 5.7613 3.7077 1.1113 28 1 6.3994 0.7235 0.9712 29 1 6.4436 1.7388 2.4339 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307103703.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:39 Heat of formation + Delta-G solvation = -60.204266 kcal Electronic energy + Delta-G solvation = -14634.460193 eV Core-core repulsion = 12070.910964 eV Total energy + Delta-G solvation = -2563.549229 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 231.072 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.14933 -36.74241 -36.02136 -32.29091 -30.81857 -29.13022 -27.44612 -24.53892 -23.24904 -20.85120 -20.16365 -17.72520 -17.13693 -16.34455 -16.11164 -15.33300 -14.79553 -13.83010 -13.78301 -13.49243 -13.36709 -12.78958 -12.41577 -12.27836 -11.93905 -11.52904 -11.13268 -10.94603 -10.93171 -10.61780 -10.41481 -10.21272 -10.09408 -9.84765 -9.12766 -8.60790 -7.29988 -6.81026 -6.01949 -3.47048 1.78163 2.83019 3.16002 3.19189 3.29013 3.36680 3.37735 4.34553 4.98856 5.14517 5.18987 5.25767 5.35628 5.49166 5.61846 5.82333 6.16913 6.24079 6.36490 6.50592 6.54157 6.70345 7.19624 7.26250 7.64598 8.00959 8.22741 8.98356 9.58629 10.10085 11.05328 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.037601 B = 0.008274 C = 0.007451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.479131 B = 3383.418348 C = 3757.223858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.356 6.356 3 C 0.488 3.512 4 O -0.500 6.500 5 C -0.069 4.069 6 H 0.115 0.885 7 C 0.163 3.837 8 N -0.587 5.587 9 C -0.268 4.268 10 H 0.072 0.928 11 C 0.009 3.991 12 N -0.897 5.897 13 Si 0.909 3.091 14 H -0.285 1.285 15 H -0.290 1.290 16 H -0.278 1.278 17 C 0.165 3.835 18 C -0.075 4.075 19 S -0.272 6.272 20 H 0.061 0.939 21 H 0.098 0.902 22 H 0.060 0.940 23 H 0.068 0.932 24 H 0.055 0.945 25 H 0.258 0.742 26 H 0.102 0.898 27 H 0.021 0.979 28 H 0.111 0.889 29 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.700 -2.026 2.433 8.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.272 6.272 3 C 0.329 3.671 4 O -0.387 6.387 5 C -0.202 4.202 6 H 0.133 0.867 7 C 0.033 3.967 8 N -0.307 5.307 9 C -0.397 4.397 10 H 0.089 0.911 11 C -0.190 4.190 12 N -0.540 5.540 13 Si 0.738 3.262 14 H -0.212 1.212 15 H -0.217 1.217 16 H -0.203 1.203 17 C 0.038 3.962 18 C -0.224 4.224 19 S -0.047 6.047 20 H 0.079 0.921 21 H 0.116 0.884 22 H 0.079 0.921 23 H 0.087 0.913 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.120 0.880 27 H 0.039 0.961 28 H 0.129 0.871 29 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.302 -1.912 3.406 9.175 hybrid contribution 1.107 -0.020 -1.700 2.029 sum -7.195 -1.931 1.706 7.642 Atomic orbital electron populations 1.23219 0.77032 1.03324 1.02327 1.86574 1.22867 1.33654 1.84118 1.23214 0.90861 0.81252 0.71818 1.90613 1.66731 1.36274 1.45123 1.23716 0.88698 1.08205 0.99535 0.86722 1.21122 0.86130 0.91154 0.98270 1.44135 0.99585 1.82773 1.04212 1.19310 0.95537 1.37180 0.87653 0.91061 1.25075 0.99332 0.96692 0.97933 1.69978 1.17525 1.34412 1.32100 0.86195 0.80603 0.77648 0.81737 1.21188 1.21654 1.20296 1.20873 0.99907 0.91118 0.84285 1.24194 0.88306 1.06747 1.03164 1.86242 1.13614 1.96419 1.08419 0.92054 0.88369 0.92087 0.91324 0.92721 0.93217 0.87975 0.96058 0.87066 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.49 15 2 O -0.36 -5.92 10.57 -39.26 -0.41 -6.34 15 3 C 0.49 9.24 7.04 36.01 0.25 9.49 15 4 O -0.50 -10.12 15.88 -18.75 -0.30 -10.41 15 5 C -0.07 -1.41 3.22 -27.76 -0.09 -1.50 15 6 H 0.11 2.42 8.14 -51.93 -0.42 2.00 15 7 C 0.16 3.52 5.24 -3.99 -0.02 3.50 15 8 N -0.59 -14.15 2.81 -173.14 -0.49 -14.64 15 9 C -0.27 -6.94 9.46 -15.06 -0.14 -7.08 15 10 H 0.07 1.83 7.88 -52.48 -0.41 1.42 15 11 C 0.01 0.24 4.81 -17.43 -0.08 0.16 15 12 N -0.90 -23.56 10.04 55.49 0.56 -23.00 15 13 Si 0.91 20.55 29.60 -169.99 -5.03 15.52 15 14 H -0.29 -6.47 7.11 56.52 0.40 -6.07 15 15 H -0.29 -6.65 7.11 56.52 0.40 -6.25 15 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 17 C 0.17 3.76 5.37 -3.98 -0.02 3.74 15 18 C -0.07 -1.56 6.46 37.28 0.24 -1.32 15 19 S -0.27 -5.49 21.66 -107.50 -2.33 -7.82 15 20 H 0.06 0.70 8.13 -51.93 -0.42 0.28 15 21 H 0.10 0.86 8.14 -51.93 -0.42 0.44 15 22 H 0.06 0.72 8.13 -51.93 -0.42 0.30 15 23 H 0.07 1.45 7.86 -51.93 -0.41 1.05 15 24 H 0.05 1.20 7.78 -51.93 -0.40 0.79 15 25 H 0.26 6.60 8.31 -40.82 -0.34 6.26 15 26 H 0.10 2.52 5.92 -51.92 -0.31 2.22 15 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 15 28 H 0.11 2.61 7.04 -51.93 -0.37 2.25 15 29 H 0.09 1.63 8.14 -51.93 -0.42 1.20 15 LS Contribution 257.64 15.07 3.88 3.88 Total: -1.00 -27.77 257.64 -6.48 -34.25 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -3.57 Total: 0.09 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: 1.20 Total: 8.47 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: 0.07 Total: -37.64 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.71 Total: -16.75 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.03 Total: 15.52 kcal Atomic # 16 Polarization: -5.49 SS G_CDS: -2.33 Total: -7.82 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -27.77 -6.48 -34.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307103703.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.954 kcal (2) G-P(sol) polarization free energy of solvation -27.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds