Wall clock time and date at job start Mon Mar 30 2020 02:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39415 * 119.67520 * 48.51783 * 3 2 1 5 5 C 1.39657 * 118.89404 * 179.71945 * 4 3 2 6 6 C 1.48144 * 120.87967 * 179.97438 * 5 4 3 7 7 O 1.21511 * 120.00514 * 0.02562 * 6 5 4 8 8 N 1.34781 * 120.00024 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99993 * 180.02562 * 8 6 5 10 10 C 1.50706 * 109.46650 * 179.97438 * 9 8 6 11 11 H 1.07995 * 120.00172 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99186 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00291 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99394 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47167 * 60.00195 * 14 12 10 16 16 H 1.48495 * 109.47012 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47125 * 300.00145 * 14 12 10 18 18 C 1.39875 * 118.23871 * 0.02562 * 5 4 3 19 19 C 1.38394 * 119.22206 * 359.97438 * 18 5 4 20 20 N 1.31538 * 121.05102 * 0.02562 * 19 18 5 21 21 H 1.08001 * 120.55269 * 359.74229 * 4 3 2 22 22 H 0.97006 * 119.99918 * 359.97438 * 8 6 5 23 23 H 1.08999 * 109.47138 * 299.99349 * 9 8 6 24 24 H 1.09000 * 109.47216 * 59.99957 * 9 8 6 25 25 H 0.97001 * 119.99905 * 179.97438 * 13 12 10 26 26 H 1.08001 * 120.38478 * 179.97438 * 18 5 4 27 27 H 1.07996 * 119.47291 * 179.97438 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2586 -0.8014 -0.9075 5 6 4.6551 -0.7837 -0.8972 6 6 5.4330 -1.6188 -1.8416 7 8 4.8567 -2.3313 -2.6395 8 7 6.7803 -1.5884 -1.8159 9 6 7.5496 -2.4138 -2.7502 10 6 9.0225 -2.1970 -2.5164 11 1 9.3525 -1.5126 -1.7490 12 6 9.9488 -2.8727 -3.2825 13 7 9.5469 -3.7058 -4.2173 14 14 11.7746 -2.6035 -2.9932 15 1 12.1162 -2.9837 -1.5990 16 1 12.5544 -3.4402 -3.9402 17 1 12.1044 -1.1721 -3.2109 18 6 5.2996 0.0426 0.0292 19 6 4.5391 0.8080 0.8959 20 7 3.2248 0.7687 0.8606 21 1 2.7227 -1.4257 -1.6070 22 1 7.2405 -1.0193 -1.1792 23 1 7.3070 -3.4645 -2.5915 24 1 7.2994 -2.1337 -3.7735 25 1 10.1986 -4.1808 -4.7564 26 1 6.3782 0.0829 0.0677 27 1 5.0325 1.4471 1.6130 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357112125.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:57 Heat of formation + Delta-G solvation = 27.872590 kcal Electronic energy + Delta-G solvation = -14388.346671 eV Core-core repulsion = 11725.465541 eV Total energy + Delta-G solvation = -2662.881130 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.075 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.77238 -38.73083 -36.70713 -34.51960 -33.13081 -32.34355 -31.78979 -27.62887 -25.35876 -24.37666 -22.61246 -21.01887 -19.23762 -17.46814 -16.76227 -16.34275 -15.48712 -15.20121 -15.13603 -14.77271 -14.40063 -14.19157 -13.58636 -13.14090 -13.03179 -12.92879 -12.26334 -12.03259 -12.00052 -11.11132 -10.96976 -10.46375 -10.20499 -10.11244 -9.56810 -9.48865 -9.45063 -8.87501 -8.12962 -6.27197 -4.35507 0.22213 0.63296 2.30108 2.45941 3.18693 3.18745 3.24600 3.25484 3.28483 3.67537 3.80561 4.24799 4.34144 4.54533 4.69778 4.81619 4.95682 5.09329 5.37782 5.56415 5.77691 6.12682 7.09983 7.11951 7.13603 7.34513 7.39957 7.49262 7.82615 8.33664 8.56543 8.79743 9.31172 10.82711 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.055631 B = 0.004796 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.194345 B = 5836.335304 C = 6324.381759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C 0.273 3.727 3 C 0.182 3.818 4 C -0.067 4.067 5 C -0.071 4.071 6 C 0.537 3.463 7 O -0.538 6.538 8 N -0.696 5.696 9 C 0.248 3.752 10 C -0.549 4.549 11 H 0.064 0.936 12 C 0.065 3.935 13 N -0.883 5.883 14 Si 0.906 3.094 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.275 1.275 18 C -0.115 4.115 19 C 0.106 3.894 20 N -0.444 5.444 21 H 0.158 0.842 22 H 0.392 0.608 23 H 0.032 0.968 24 H 0.032 0.968 25 H 0.268 0.732 26 H 0.152 0.848 27 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.436 8.127 9.195 13.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.068 5.068 2 C -0.045 4.045 3 C 0.044 3.956 4 C -0.090 4.090 5 C -0.083 4.083 6 C 0.320 3.680 7 O -0.417 6.417 8 N -0.344 5.344 9 C 0.128 3.872 10 C -0.587 4.587 11 H 0.082 0.918 12 C -0.139 4.139 13 N -0.520 5.520 14 Si 0.733 3.267 15 H -0.200 1.200 16 H -0.210 1.210 17 H -0.200 1.200 18 C -0.136 4.136 19 C -0.053 4.053 20 N -0.155 5.155 21 H 0.176 0.824 22 H 0.226 0.774 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.078 0.922 26 H 0.170 0.830 27 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -7.957 7.957 9.010 14.416 hybrid contribution 2.242 -0.126 -0.152 2.250 sum -5.716 7.832 8.858 13.132 Atomic orbital electron populations 1.81244 1.11462 1.07101 1.07032 1.24887 0.91562 0.94039 0.93987 1.16203 0.86190 0.97413 0.95791 1.22170 0.93755 0.96329 0.96789 1.20718 0.93893 0.97044 0.96624 1.18039 0.83312 0.82813 0.83795 1.90776 1.70167 1.41454 1.39318 1.46458 1.04731 1.45012 1.38209 1.19244 0.89527 0.90332 0.88095 1.21135 0.90093 1.27261 1.20189 0.91796 1.24951 0.99723 0.94605 0.94642 1.69951 1.34993 1.26483 1.20586 0.86443 0.83753 0.78337 0.78211 1.19998 1.21021 1.20003 1.22756 1.02618 0.94335 0.93920 1.22759 0.87863 0.97179 0.97530 1.67385 1.11032 1.17386 1.19720 0.82406 0.77391 0.94988 0.94998 0.92225 0.82989 0.80834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -5.51 18.54 41.84 0.78 -4.73 15 2 C 0.27 3.42 15.53 -22.47 -0.35 3.07 15 3 C 0.18 2.11 6.58 -85.11 -0.56 1.55 15 4 C -0.07 -0.82 9.36 -38.61 -0.36 -1.18 15 5 C -0.07 -0.93 5.90 -104.69 -0.62 -1.55 15 6 C 0.54 9.57 7.80 -12.19 -0.10 9.47 15 7 O -0.54 -11.78 16.44 5.36 0.09 -11.69 15 8 N -0.70 -12.93 5.51 -62.33 -0.34 -13.27 15 9 C 0.25 6.05 5.43 -5.19 -0.03 6.02 15 10 C -0.55 -13.81 9.28 -34.43 -0.32 -14.13 15 11 H 0.06 1.47 7.60 -52.49 -0.40 1.08 15 12 C 0.07 1.71 5.46 -17.82 -0.10 1.61 15 13 N -0.88 -24.79 13.29 55.43 0.74 -24.06 15 14 Si 0.91 19.74 29.54 -169.99 -5.02 14.71 15 15 H -0.27 -5.85 7.11 56.52 0.40 -5.45 15 16 H -0.28 -6.24 7.11 56.52 0.40 -5.83 15 17 H -0.27 -5.85 7.11 56.52 0.40 -5.45 15 18 C -0.11 -1.09 9.62 -38.91 -0.37 -1.46 15 19 C 0.11 0.90 11.17 -17.62 -0.20 0.70 15 20 N -0.44 -4.88 10.25 -11.21 -0.11 -5.00 15 21 H 0.16 1.91 7.74 -52.49 -0.41 1.50 15 22 H 0.39 5.88 6.46 -40.82 -0.26 5.62 15 23 H 0.03 0.87 8.14 -51.93 -0.42 0.44 15 24 H 0.03 0.87 8.14 -51.93 -0.42 0.44 15 25 H 0.27 7.09 8.31 -40.82 -0.34 6.76 15 26 H 0.15 1.10 6.52 -52.49 -0.34 0.76 15 27 H 0.17 0.84 8.06 -52.49 -0.42 0.42 15 LS Contribution 261.97 15.07 3.95 3.95 Total: -1.00 -30.95 261.97 -4.74 -35.70 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: -1.81 Total: 0.27 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -3.00 Total: 4.11 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: 1.05 Total: -47.05 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.69 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.95 -4.74 -35.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357112125.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.571 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds