Wall clock time and date at job start Mon Mar 30 2020 02:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39415 * 119.67520 * 48.51783 * 3 2 1 5 5 C 1.39657 * 118.89404 * 179.71945 * 4 3 2 6 6 C 1.48144 * 120.87967 * 179.97438 * 5 4 3 7 7 O 1.21511 * 120.00514 * 0.02562 * 6 5 4 8 8 N 1.34781 * 120.00024 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99993 * 180.02562 * 8 6 5 10 10 C 1.50706 * 109.46650 * 179.97438 * 9 8 6 11 11 H 1.07995 * 120.00172 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99186 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00291 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99394 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47167 * 60.00195 * 14 12 10 16 16 H 1.48495 * 109.47012 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47125 * 300.00145 * 14 12 10 18 18 C 1.39875 * 118.23871 * 0.02562 * 5 4 3 19 19 C 1.38394 * 119.22206 * 359.97438 * 18 5 4 20 20 N 1.31538 * 121.05102 * 0.02562 * 19 18 5 21 21 H 1.08001 * 120.55269 * 359.74229 * 4 3 2 22 22 H 0.97006 * 119.99918 * 359.97438 * 8 6 5 23 23 H 1.08999 * 109.47138 * 299.99349 * 9 8 6 24 24 H 1.09000 * 109.47216 * 59.99957 * 9 8 6 25 25 H 0.97001 * 119.99905 * 179.97438 * 13 12 10 26 26 H 1.08001 * 120.38478 * 179.97438 * 18 5 4 27 27 H 1.07996 * 119.47291 * 179.97438 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2586 -0.8014 -0.9075 5 6 4.6551 -0.7837 -0.8972 6 6 5.4330 -1.6188 -1.8416 7 8 4.8567 -2.3313 -2.6395 8 7 6.7803 -1.5884 -1.8159 9 6 7.5496 -2.4138 -2.7502 10 6 9.0225 -2.1970 -2.5164 11 1 9.3525 -1.5126 -1.7490 12 6 9.9488 -2.8727 -3.2825 13 7 9.5469 -3.7058 -4.2173 14 14 11.7746 -2.6035 -2.9932 15 1 12.1162 -2.9837 -1.5990 16 1 12.5544 -3.4402 -3.9402 17 1 12.1044 -1.1721 -3.2109 18 6 5.2996 0.0426 0.0292 19 6 4.5391 0.8080 0.8959 20 7 3.2248 0.7687 0.8606 21 1 2.7227 -1.4257 -1.6070 22 1 7.2405 -1.0193 -1.1792 23 1 7.3070 -3.4645 -2.5915 24 1 7.2994 -2.1337 -3.7735 25 1 10.1986 -4.1808 -4.7564 26 1 6.3782 0.0829 0.0677 27 1 5.0325 1.4471 1.6130 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357112125.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:57 Heat of formation + Delta-G solvation = 5.338811 kcal Electronic energy + Delta-G solvation = -14389.323809 eV Core-core repulsion = 11725.465541 eV Total energy + Delta-G solvation = -2663.858268 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.075 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.77998 -40.14105 -37.74041 -36.27147 -34.60327 -33.73961 -32.73244 -29.45180 -26.44867 -25.59422 -24.12436 -22.35736 -20.61290 -18.74040 -18.04469 -17.64145 -16.78938 -16.65678 -16.39214 -16.16927 -15.68141 -15.32724 -14.77743 -14.40318 -14.16790 -14.08215 -13.99442 -13.80845 -13.03583 -12.91466 -12.65117 -12.22562 -11.49422 -11.38174 -11.14167 -10.77358 -10.74991 -10.32479 -9.90892 -8.26129 -6.42461 -0.69409 -0.30472 1.31318 1.48210 1.48365 1.51559 1.59476 2.03298 2.09976 2.37315 2.50263 2.80714 3.09870 3.53654 3.57571 3.75244 3.79629 4.09706 4.54379 4.63744 4.89397 5.13302 5.25191 5.33971 5.43258 5.65087 5.85076 6.14357 6.56967 6.65820 6.76961 7.21908 7.36357 8.85487 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.055631 B = 0.004796 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.194345 B = 5836.335304 C = 6324.381759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C 0.289 3.711 3 C 0.179 3.821 4 C -0.067 4.067 5 C -0.088 4.088 6 C 0.539 3.461 7 O -0.588 6.588 8 N -0.689 5.689 9 C 0.264 3.736 10 C -0.555 4.555 11 H 0.091 0.909 12 C 0.004 3.996 13 N -0.931 5.931 14 Si 0.983 3.017 15 H -0.261 1.261 16 H -0.291 1.291 17 H -0.261 1.261 18 C -0.090 4.090 19 C 0.124 3.876 20 N -0.450 5.450 21 H 0.149 0.851 22 H 0.413 0.587 23 H -0.006 1.006 24 H -0.006 1.006 25 H 0.268 0.732 26 H 0.182 0.818 27 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.736 10.326 11.660 16.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.100 5.100 2 C -0.028 4.028 3 C 0.042 3.958 4 C -0.091 4.091 5 C -0.099 4.099 6 C 0.326 3.674 7 O -0.470 6.470 8 N -0.339 5.339 9 C 0.141 3.859 10 C -0.592 4.592 11 H 0.109 0.891 12 C -0.196 4.196 13 N -0.569 5.569 14 Si 0.806 3.194 15 H -0.185 1.185 16 H -0.217 1.217 17 H -0.186 1.186 18 C -0.111 4.111 19 C -0.036 4.036 20 N -0.161 5.161 21 H 0.167 0.833 22 H 0.251 0.749 23 H 0.012 0.988 24 H 0.012 0.988 25 H 0.077 0.923 26 H 0.200 0.800 27 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -6.281 10.197 11.521 16.618 hybrid contribution 1.682 -0.773 -0.878 2.049 sum -4.598 9.423 10.643 14.940 Atomic orbital electron populations 1.81254 1.12367 1.08253 1.08155 1.25012 0.91700 0.93082 0.93031 1.15992 0.85588 0.97970 0.96219 1.22050 0.93632 0.96462 0.96918 1.20205 0.93604 0.98569 0.97571 1.18683 0.82941 0.82223 0.83597 1.90750 1.71017 1.43631 1.41580 1.46066 1.05034 1.44893 1.37896 1.18665 0.90583 0.89120 0.87517 1.21588 0.90101 1.27170 1.20378 0.89134 1.26043 1.05154 0.94181 0.94236 1.70125 1.36728 1.28009 1.22068 0.85227 0.77110 0.78635 0.78385 1.18540 1.21675 1.18556 1.23096 1.04145 0.92031 0.91798 1.23528 0.86684 0.96269 0.97094 1.67464 1.12419 1.16972 1.19258 0.83325 0.74942 0.98838 0.98848 0.92340 0.80038 0.76037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -11.82 18.54 19.01 0.35 -11.47 15 2 C 0.29 7.05 15.53 88.33 1.37 8.42 15 3 C 0.18 3.87 6.58 40.54 0.27 4.13 15 4 C -0.07 -1.59 9.36 22.90 0.21 -1.38 15 5 C -0.09 -2.16 5.90 -19.91 -0.12 -2.28 15 6 C 0.54 19.35 7.80 86.87 0.68 20.03 15 7 O -0.59 -26.99 16.44 -3.75 -0.06 -27.06 15 8 N -0.69 -25.31 5.51 -469.40 -2.58 -27.89 15 9 C 0.26 13.26 5.43 85.63 0.46 13.73 15 10 C -0.55 -27.63 9.28 25.60 0.24 -27.39 15 11 H 0.09 3.92 7.60 -2.91 -0.02 3.90 15 12 C 0.00 0.19 5.46 84.66 0.46 0.65 15 13 N -0.93 -53.67 13.29 21.45 0.28 -53.39 15 14 Si 0.98 39.66 29.54 68.60 2.03 41.69 15 15 H -0.26 -9.89 7.11 99.48 0.71 -9.18 15 16 H -0.29 -11.93 7.11 99.48 0.71 -11.22 15 17 H -0.26 -9.90 7.11 99.48 0.71 -9.19 15 18 C -0.09 -1.32 9.62 22.70 0.22 -1.10 15 19 C 0.12 1.48 11.17 84.77 0.95 2.42 15 20 N -0.45 -8.35 10.25 -189.38 -1.94 -10.29 15 21 H 0.15 3.75 7.74 -2.91 -0.02 3.72 15 22 H 0.41 11.33 6.46 -92.70 -0.60 10.74 15 23 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 15 24 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 15 25 H 0.27 14.56 8.31 -92.71 -0.77 13.79 15 26 H 0.18 1.62 6.52 -2.91 -0.02 1.60 15 27 H 0.22 0.57 8.06 -2.91 -0.02 0.54 15 Total: -1.00 -70.70 261.97 3.44 -67.25 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: 0.63 Total: 3.92 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: 4.74 Total: 17.24 kcal Atomic # 7 Polarization: -99.15 SS G_CDS: -3.89 Total: -103.04 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.06 Total: -27.06 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.69 kcal Total: -70.70 3.44 -67.25 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357112125.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.591 kcal (2) G-P(sol) polarization free energy of solvation -70.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds