Wall clock time and date at job start Mon Mar 30 2020 02:58:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13604 * 1
3 3 C 1.43203 * 179.97438 * 2 1
4 4 C 1.39415 * 119.67520 * 48.51783 * 3 2 1
5 5 C 1.39657 * 118.89404 * 179.71945 * 4 3 2
6 6 C 1.48144 * 120.87967 * 179.97438 * 5 4 3
7 7 O 1.21511 * 120.00514 * 0.02562 * 6 5 4
8 8 N 1.34781 * 120.00024 * 180.02562 * 6 5 4
9 9 C 1.46503 * 119.99993 * 180.02562 * 8 6 5
10 10 C 1.50706 * 109.46650 * 179.97438 * 9 8 6
11 11 H 1.07995 * 120.00172 * 359.97438 * 10 9 8
12 12 C 1.37885 * 119.99186 * 179.97438 * 10 9 8
13 13 N 1.31510 * 120.00291 * 0.02562 * 12 10 9
14 14 Si 1.86803 * 119.99394 * 179.97438 * 12 10 9
15 15 H 1.48498 * 109.47167 * 60.00195 * 14 12 10
16 16 H 1.48495 * 109.47012 * 180.02562 * 14 12 10
17 17 H 1.48496 * 109.47125 * 300.00145 * 14 12 10
18 18 C 1.39875 * 118.23871 * 0.02562 * 5 4 3
19 19 C 1.38394 * 119.22206 * 359.97438 * 18 5 4
20 20 N 1.31538 * 121.05102 * 0.02562 * 19 18 5
21 21 H 1.08001 * 120.55269 * 359.74229 * 4 3 2
22 22 H 0.97006 * 119.99918 * 359.97438 * 8 6 5
23 23 H 1.08999 * 109.47138 * 299.99349 * 9 8 6
24 24 H 1.09000 * 109.47216 * 59.99957 * 9 8 6
25 25 H 0.97001 * 119.99905 * 179.97438 * 13 12 10
26 26 H 1.08001 * 120.38478 * 179.97438 * 18 5 4
27 27 H 1.07996 * 119.47291 * 179.97438 * 19 18 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.5681 0.0006 0.0000
4 6 3.2586 -0.8014 -0.9075
5 6 4.6551 -0.7837 -0.8972
6 6 5.4330 -1.6188 -1.8416
7 8 4.8567 -2.3313 -2.6395
8 7 6.7803 -1.5884 -1.8159
9 6 7.5496 -2.4138 -2.7502
10 6 9.0225 -2.1970 -2.5164
11 1 9.3525 -1.5126 -1.7490
12 6 9.9488 -2.8727 -3.2825
13 7 9.5469 -3.7058 -4.2173
14 14 11.7746 -2.6035 -2.9932
15 1 12.1162 -2.9837 -1.5990
16 1 12.5544 -3.4402 -3.9402
17 1 12.1044 -1.1721 -3.2109
18 6 5.2996 0.0426 0.0292
19 6 4.5391 0.8080 0.8959
20 7 3.2248 0.7687 0.8606
21 1 2.7227 -1.4257 -1.6070
22 1 7.2405 -1.0193 -1.1792
23 1 7.3070 -3.4645 -2.5915
24 1 7.2994 -2.1337 -3.7735
25 1 10.1986 -4.1808 -4.7564
26 1 6.3782 0.0829 0.0677
27 1 5.0325 1.4471 1.6130
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000357112125.mol2 27
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:58:57
Heat of formation + Delta-G solvation = 5.338811 kcal
Electronic energy + Delta-G solvation = -14389.323809 eV
Core-core repulsion = 11725.465541 eV
Total energy + Delta-G solvation = -2663.858268 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 231.075 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-41.77998 -40.14105 -37.74041 -36.27147 -34.60327 -33.73961 -32.73244 -29.45180
-26.44867 -25.59422 -24.12436 -22.35736 -20.61290 -18.74040 -18.04469 -17.64145
-16.78938 -16.65678 -16.39214 -16.16927 -15.68141 -15.32724 -14.77743 -14.40318
-14.16790 -14.08215 -13.99442 -13.80845 -13.03583 -12.91466 -12.65117 -12.22562
-11.49422 -11.38174 -11.14167 -10.77358 -10.74991 -10.32479 -9.90892 -8.26129
-6.42461 -0.69409 -0.30472 1.31318 1.48210 1.48365 1.51559 1.59476
2.03298 2.09976 2.37315 2.50263 2.80714 3.09870 3.53654 3.57571
3.75244 3.79629 4.09706 4.54379 4.63744 4.89397 5.13302 5.25191
5.33971 5.43258 5.65087 5.85076 6.14357 6.56967 6.65820 6.76961
7.21908 7.36357 8.85487
Molecular weight = 231.07amu
Principal moments of inertia in cm(-1)
A = 0.055631 B = 0.004796 C = 0.004426
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 503.194345 B = 5836.335304 C = 6324.381759
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.423 5.423
2 C 0.289 3.711
3 C 0.179 3.821
4 C -0.067 4.067
5 C -0.088 4.088
6 C 0.539 3.461
7 O -0.588 6.588
8 N -0.689 5.689
9 C 0.264 3.736
10 C -0.555 4.555
11 H 0.091 0.909
12 C 0.004 3.996
13 N -0.931 5.931
14 Si 0.983 3.017
15 H -0.261 1.261
16 H -0.291 1.291
17 H -0.261 1.261
18 C -0.090 4.090
19 C 0.124 3.876
20 N -0.450 5.450
21 H 0.149 0.851
22 H 0.413 0.587
23 H -0.006 1.006
24 H -0.006 1.006
25 H 0.268 0.732
26 H 0.182 0.818
27 H 0.223 0.777
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.736 10.326 11.660 16.017
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.100 5.100
2 C -0.028 4.028
3 C 0.042 3.958
4 C -0.091 4.091
5 C -0.099 4.099
6 C 0.326 3.674
7 O -0.470 6.470
8 N -0.339 5.339
9 C 0.141 3.859
10 C -0.592 4.592
11 H 0.109 0.891
12 C -0.196 4.196
13 N -0.569 5.569
14 Si 0.806 3.194
15 H -0.185 1.185
16 H -0.217 1.217
17 H -0.186 1.186
18 C -0.111 4.111
19 C -0.036 4.036
20 N -0.161 5.161
21 H 0.167 0.833
22 H 0.251 0.749
23 H 0.012 0.988
24 H 0.012 0.988
25 H 0.077 0.923
26 H 0.200 0.800
27 H 0.240 0.760
Dipole moment (debyes) X Y Z Total
from point charges -6.281 10.197 11.521 16.618
hybrid contribution 1.682 -0.773 -0.878 2.049
sum -4.598 9.423 10.643 14.940
Atomic orbital electron populations
1.81254 1.12367 1.08253 1.08155 1.25012 0.91700 0.93082 0.93031
1.15992 0.85588 0.97970 0.96219 1.22050 0.93632 0.96462 0.96918
1.20205 0.93604 0.98569 0.97571 1.18683 0.82941 0.82223 0.83597
1.90750 1.71017 1.43631 1.41580 1.46066 1.05034 1.44893 1.37896
1.18665 0.90583 0.89120 0.87517 1.21588 0.90101 1.27170 1.20378
0.89134 1.26043 1.05154 0.94181 0.94236 1.70125 1.36728 1.28009
1.22068 0.85227 0.77110 0.78635 0.78385 1.18540 1.21675 1.18556
1.23096 1.04145 0.92031 0.91798 1.23528 0.86684 0.96269 0.97094
1.67464 1.12419 1.16972 1.19258 0.83325 0.74942 0.98838 0.98848
0.92340 0.80038 0.76037
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.42 -11.82 18.54 19.01 0.35 -11.47 15
2 C 0.29 7.05 15.53 88.33 1.37 8.42 15
3 C 0.18 3.87 6.58 40.54 0.27 4.13 15
4 C -0.07 -1.59 9.36 22.90 0.21 -1.38 15
5 C -0.09 -2.16 5.90 -19.91 -0.12 -2.28 15
6 C 0.54 19.35 7.80 86.87 0.68 20.03 15
7 O -0.59 -26.99 16.44 -3.75 -0.06 -27.06 15
8 N -0.69 -25.31 5.51 -469.40 -2.58 -27.89 15
9 C 0.26 13.26 5.43 85.63 0.46 13.73 15
10 C -0.55 -27.63 9.28 25.60 0.24 -27.39 15
11 H 0.09 3.92 7.60 -2.91 -0.02 3.90 15
12 C 0.00 0.19 5.46 84.66 0.46 0.65 15
13 N -0.93 -53.67 13.29 21.45 0.28 -53.39 15
14 Si 0.98 39.66 29.54 68.60 2.03 41.69 15
15 H -0.26 -9.89 7.11 99.48 0.71 -9.18 15
16 H -0.29 -11.93 7.11 99.48 0.71 -11.22 15
17 H -0.26 -9.90 7.11 99.48 0.71 -9.19 15
18 C -0.09 -1.32 9.62 22.70 0.22 -1.10 15
19 C 0.12 1.48 11.17 84.77 0.95 2.42 15
20 N -0.45 -8.35 10.25 -189.38 -1.94 -10.29 15
21 H 0.15 3.75 7.74 -2.91 -0.02 3.72 15
22 H 0.41 11.33 6.46 -92.70 -0.60 10.74 15
23 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 15
24 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 15
25 H 0.27 14.56 8.31 -92.71 -0.77 13.79 15
26 H 0.18 1.62 6.52 -2.91 -0.02 1.60 15
27 H 0.22 0.57 8.06 -2.91 -0.02 0.54 15
Total: -1.00 -70.70 261.97 3.44 -67.25
By element:
Atomic # 1 Polarization: 3.29 SS G_CDS: 0.63 Total: 3.92 kcal
Atomic # 6 Polarization: 12.50 SS G_CDS: 4.74 Total: 17.24 kcal
Atomic # 7 Polarization: -99.15 SS G_CDS: -3.89 Total: -103.04 kcal
Atomic # 8 Polarization: -26.99 SS G_CDS: -0.06 Total: -27.06 kcal
Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.69 kcal
Total: -70.70 3.44 -67.25 kcal
The number of atoms in the molecule is 27
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000357112125.mol2 27
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.591 kcal
(2) G-P(sol) polarization free energy of solvation -70.697 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.895 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.252 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.339 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds