Wall clock time and date at job start Mon Mar 30 2020 02:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39921 * 120.89531 * 209.70665 * 3 2 1 5 5 C 1.38400 * 119.17991 * 179.97438 * 4 3 2 6 6 N 1.31512 * 121.05047 * 359.97438 * 5 4 3 7 7 C 1.32713 * 121.98189 * 359.70461 * 6 5 4 8 8 C 1.48170 * 119.65329 * 180.31773 * 7 6 5 9 9 O 1.21518 * 119.99506 * 180.26884 * 8 7 6 10 10 N 1.34774 * 120.00356 * 0.26669 * 8 7 6 11 11 C 1.46498 * 120.00341 * 180.02562 * 10 8 7 12 12 C 1.50691 * 109.47280 * 179.97438 * 11 10 8 13 13 H 1.07999 * 120.00115 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99877 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00130 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99964 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47176 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46961 * 119.99504 * 16 14 12 19 19 H 1.48500 * 109.47261 * 239.99774 * 16 14 12 20 20 C 1.39166 * 120.68908 * 0.58822 * 7 6 5 21 21 H 1.07996 * 120.40536 * 359.95016 * 4 3 2 22 22 H 1.08004 * 119.47261 * 179.97438 * 5 4 3 23 23 H 0.96996 * 119.99794 * 359.97438 * 10 8 7 24 24 H 1.08999 * 109.47282 * 300.00667 * 11 10 8 25 25 H 1.09007 * 109.46740 * 59.99869 * 11 10 8 26 26 H 0.97003 * 119.99998 * 180.02562 * 15 14 12 27 27 H 1.08002 * 120.55712 * 179.70814 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2860 1.0438 0.5950 5 6 4.6694 1.0082 0.5749 6 7 5.3141 0.0122 0.0077 7 6 4.6776 -1.0025 -0.5638 8 6 5.4559 -2.1015 -1.1818 9 8 4.8795 -3.0311 -1.7110 10 7 6.8031 -2.0700 -1.1570 11 6 7.5726 -3.1563 -1.7686 12 6 9.0453 -2.8818 -1.6063 13 1 9.3753 -1.9875 -1.0987 14 6 9.9717 -3.7721 -2.1066 15 7 9.5700 -4.8609 -2.7252 16 14 11.7975 -3.4315 -1.9060 17 1 11.9851 -2.1504 -1.1788 18 1 12.4249 -4.5345 -1.1345 19 1 12.4338 -3.3393 -3.2446 20 6 3.2868 -1.0423 -0.5935 21 1 2.7670 1.8668 1.0637 22 1 5.2283 1.8112 1.0324 23 1 7.2631 -1.3277 -0.7349 24 1 7.3221 -4.0983 -1.2808 25 1 7.3301 -3.2208 -2.8294 26 1 10.2218 -5.4874 -3.0769 27 1 2.7711 -1.8668 -1.0632 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357387013.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:52 Heat of formation + Delta-G solvation = 25.919048 kcal Electronic energy + Delta-G solvation = -14388.726600 eV Core-core repulsion = 11725.760757 eV Total energy + Delta-G solvation = -2662.965842 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.71195 -38.47987 -36.95604 -34.36659 -33.13014 -32.27100 -31.63695 -27.49198 -25.35692 -24.33993 -22.57155 -20.86450 -19.11205 -17.29617 -16.69014 -16.23540 -15.72061 -15.08499 -15.01304 -14.74046 -14.22858 -14.19765 -13.40924 -13.31638 -13.26445 -12.99534 -12.14695 -11.95917 -11.86382 -10.97692 -10.92626 -10.36809 -10.14859 -10.11378 -9.46317 -9.43624 -9.32594 -8.76732 -7.96071 -6.18156 -4.24794 0.23195 0.60460 2.23743 2.53911 3.17801 3.24040 3.28814 3.31765 3.35023 3.70203 3.92609 4.19329 4.35344 4.47846 4.66764 4.78644 5.18483 5.24250 5.38189 5.49292 5.68684 6.20429 7.04429 7.22014 7.28733 7.45456 7.50735 7.67599 7.93386 8.53552 8.70501 8.96607 9.41404 10.92058 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.055835 B = 0.004823 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.353354 B = 5804.291070 C = 6290.489887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C 0.257 3.743 3 C 0.011 3.989 4 C -0.115 4.115 5 C 0.105 3.895 6 N -0.439 5.439 7 C 0.103 3.897 8 C 0.547 3.453 9 O -0.545 6.545 10 N -0.682 5.682 11 C 0.245 3.755 12 C -0.542 4.542 13 H 0.066 0.934 14 C 0.063 3.937 15 N -0.886 5.886 16 Si 0.905 3.095 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.073 4.073 21 H 0.149 0.851 22 H 0.173 0.827 23 H 0.403 0.597 24 H 0.032 0.968 25 H 0.032 0.968 26 H 0.266 0.734 27 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.694 12.447 7.013 16.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.074 5.074 2 C -0.060 4.060 3 C 0.000 4.000 4 C -0.137 4.137 5 C -0.054 4.054 6 N -0.150 5.150 7 C -0.036 4.036 8 C 0.329 3.671 9 O -0.424 6.424 10 N -0.329 5.329 11 C 0.125 3.875 12 C -0.581 4.581 13 H 0.084 0.916 14 C -0.140 4.140 15 N -0.523 5.523 16 Si 0.732 3.268 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.096 4.096 21 H 0.166 0.834 22 H 0.190 0.810 23 H 0.238 0.762 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -9.812 11.549 6.500 16.490 hybrid contribution 0.706 0.495 0.282 0.907 sum -9.106 12.044 6.782 16.552 Atomic orbital electron populations 1.81279 1.11713 1.07034 1.07415 1.25362 0.92247 0.94142 0.94207 1.16134 0.85058 0.97038 1.01746 1.22410 0.95842 0.97739 0.97749 1.22854 0.90861 0.96181 0.95524 1.67600 1.41418 1.00427 1.05583 1.21602 0.91134 0.94201 0.96682 1.17789 0.83488 0.84727 0.81048 1.90777 1.70356 1.34940 1.46324 1.46402 1.04682 1.26501 1.55293 1.19261 0.89664 0.84692 0.93876 1.21250 0.90134 1.08013 1.38668 0.91589 1.24954 0.99674 0.94743 0.94679 1.69981 1.34618 1.10917 1.36788 0.86338 0.84138 0.78372 0.77936 1.19539 1.20817 1.20812 1.22224 0.94238 0.97632 0.95534 0.83355 0.80970 0.76220 0.95022 0.95034 0.92473 0.82336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -5.05 18.54 41.84 0.78 -4.27 15 2 C 0.26 2.73 15.40 -22.47 -0.35 2.38 15 3 C 0.01 0.11 5.75 -106.73 -0.61 -0.50 15 4 C -0.11 -0.83 9.86 -38.89 -0.38 -1.22 15 5 C 0.10 0.88 11.17 -17.63 -0.20 0.68 15 6 N -0.44 -5.58 9.51 -9.87 -0.09 -5.67 15 7 C 0.10 1.51 6.75 -83.06 -0.56 0.95 15 8 C 0.55 10.74 7.81 -12.18 -0.10 10.65 15 9 O -0.55 -12.42 16.32 5.35 0.09 -12.33 15 10 N -0.68 -14.32 5.54 -62.33 -0.35 -14.67 15 11 C 0.25 6.35 5.43 -5.20 -0.03 6.32 15 12 C -0.54 -14.46 9.28 -34.44 -0.32 -14.78 15 13 H 0.07 1.66 7.60 -52.49 -0.40 1.26 15 14 C 0.06 1.72 5.46 -17.82 -0.10 1.63 15 15 N -0.89 -25.62 13.29 55.43 0.74 -24.88 15 16 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 15 17 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 20 C -0.07 -0.90 9.38 -38.62 -0.36 -1.26 15 21 H 0.15 0.60 8.06 -52.49 -0.42 0.17 15 22 H 0.17 0.83 8.06 -52.48 -0.42 0.41 15 23 H 0.40 7.63 7.65 -40.82 -0.31 7.31 15 24 H 0.03 0.90 8.14 -51.93 -0.42 0.47 15 25 H 0.03 0.89 8.14 -51.93 -0.42 0.47 15 26 H 0.27 7.19 8.31 -40.82 -0.34 6.85 15 27 H 0.16 1.96 7.64 -52.49 -0.40 1.56 15 LS Contribution 263.93 15.07 3.98 3.98 Total: -1.00 -31.63 263.93 -4.82 -36.45 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -1.94 Total: 1.00 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: -3.00 Total: 4.85 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: 1.07 Total: -49.49 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.09 Total: -12.33 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -31.63 -4.82 -36.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357387013.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.373 kcal (2) G-P(sol) polarization free energy of solvation -31.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds