Wall clock time and date at job start Mon Mar 30 2020 02:58:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13602 * 1
3 3 C 1.43198 * 179.97438 * 2 1
4 4 C 1.39921 * 120.89531 * 209.70665 * 3 2 1
5 5 C 1.38400 * 119.17991 * 179.97438 * 4 3 2
6 6 N 1.31512 * 121.05047 * 359.97438 * 5 4 3
7 7 C 1.32713 * 121.98189 * 359.70461 * 6 5 4
8 8 C 1.48170 * 119.65329 * 180.31773 * 7 6 5
9 9 O 1.21518 * 119.99506 * 180.26884 * 8 7 6
10 10 N 1.34774 * 120.00356 * 0.26669 * 8 7 6
11 11 C 1.46498 * 120.00341 * 180.02562 * 10 8 7
12 12 C 1.50691 * 109.47280 * 179.97438 * 11 10 8
13 13 H 1.07999 * 120.00115 * 359.97438 * 12 11 10
14 14 C 1.37879 * 119.99877 * 180.02562 * 12 11 10
15 15 N 1.31514 * 120.00130 * 359.97438 * 14 12 11
16 16 Si 1.86802 * 119.99964 * 179.97438 * 14 12 11
17 17 H 1.48505 * 109.47176 * 0.02562 * 16 14 12
18 18 H 1.48504 * 109.46961 * 119.99504 * 16 14 12
19 19 H 1.48500 * 109.47261 * 239.99774 * 16 14 12
20 20 C 1.39166 * 120.68908 * 0.58822 * 7 6 5
21 21 H 1.07996 * 120.40536 * 359.95016 * 4 3 2
22 22 H 1.08004 * 119.47261 * 179.97438 * 5 4 3
23 23 H 0.96996 * 119.99794 * 359.97438 * 10 8 7
24 24 H 1.08999 * 109.47282 * 300.00667 * 11 10 8
25 25 H 1.09007 * 109.46740 * 59.99869 * 11 10 8
26 26 H 0.97003 * 119.99998 * 180.02562 * 15 14 12
27 27 H 1.08002 * 120.55712 * 179.70814 * 20 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.5680 0.0006 0.0000
4 6 3.2860 1.0438 0.5950
5 6 4.6694 1.0082 0.5749
6 7 5.3141 0.0122 0.0077
7 6 4.6776 -1.0025 -0.5638
8 6 5.4559 -2.1015 -1.1818
9 8 4.8795 -3.0311 -1.7110
10 7 6.8031 -2.0700 -1.1570
11 6 7.5726 -3.1563 -1.7686
12 6 9.0453 -2.8818 -1.6063
13 1 9.3753 -1.9875 -1.0987
14 6 9.9717 -3.7721 -2.1066
15 7 9.5700 -4.8609 -2.7252
16 14 11.7975 -3.4315 -1.9060
17 1 11.9851 -2.1504 -1.1788
18 1 12.4249 -4.5345 -1.1345
19 1 12.4338 -3.3393 -3.2446
20 6 3.2868 -1.0423 -0.5935
21 1 2.7670 1.8668 1.0637
22 1 5.2283 1.8112 1.0324
23 1 7.2631 -1.3277 -0.7349
24 1 7.3221 -4.0983 -1.2808
25 1 7.3301 -3.2208 -2.8294
26 1 10.2218 -5.4874 -3.0769
27 1 2.7711 -1.8668 -1.0632
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000357387013.mol2 27
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:58:52
Heat of formation + Delta-G solvation = 2.502654 kcal
Electronic energy + Delta-G solvation = -14389.742011 eV
Core-core repulsion = 11725.760757 eV
Total energy + Delta-G solvation = -2663.981253 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 231.075 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-41.73122 -39.97635 -37.88305 -36.22930 -34.50460 -33.77893 -32.62341 -29.41356
-26.40703 -25.57530 -24.14500 -22.25386 -20.53502 -18.68182 -17.98357 -17.39862
-16.99744 -16.65604 -16.43841 -16.16463 -15.37723 -15.37186 -14.72413 -14.41171
-14.25361 -14.17110 -13.99839 -13.78296 -12.98601 -12.88849 -12.73412 -12.20950
-11.44923 -11.33961 -11.01623 -10.80112 -10.67826 -10.37095 -9.83659 -8.27108
-6.43080 -0.62687 -0.28972 1.36845 1.46408 1.47208 1.54714 1.61135
2.05270 2.20031 2.42832 2.58091 2.84055 3.08178 3.19113 3.69790
3.79220 3.85945 4.35145 4.49328 4.66278 4.87056 5.10326 5.24064
5.43309 5.46350 5.66403 5.84986 6.20311 6.57818 6.66655 6.89951
7.22370 7.37422 8.85142
Molecular weight = 231.07amu
Principal moments of inertia in cm(-1)
A = 0.055835 B = 0.004823 C = 0.004450
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 501.353354 B = 5804.291070 C = 6290.489887
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.434 5.434
2 C 0.280 3.720
3 C 0.012 3.988
4 C -0.070 4.070
5 C 0.114 3.886
6 N -0.457 5.457
7 C 0.076 3.924
8 C 0.546 3.454
9 O -0.588 6.588
10 N -0.683 5.683
11 C 0.262 3.738
12 C -0.554 4.554
13 H 0.083 0.917
14 C 0.004 3.996
15 N -0.930 5.930
16 Si 0.985 3.015
17 H -0.253 1.253
18 H -0.279 1.279
19 H -0.279 1.279
20 C -0.073 4.073
21 H 0.198 0.802
22 H 0.220 0.780
23 H 0.414 0.586
24 H -0.005 1.005
25 H -0.005 1.005
26 H 0.269 0.731
27 H 0.146 0.854
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.215 15.811 8.923 19.927
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.109 5.109
2 C -0.036 4.036
3 C 0.001 3.999
4 C -0.093 4.093
5 C -0.046 4.046
6 N -0.169 5.169
7 C -0.061 4.061
8 C 0.332 3.668
9 O -0.470 6.470
10 N -0.331 5.331
11 C 0.140 3.860
12 C -0.592 4.592
13 H 0.101 0.899
14 C -0.196 4.196
15 N -0.568 5.568
16 Si 0.808 3.192
17 H -0.176 1.176
18 H -0.205 1.205
19 H -0.205 1.205
20 C -0.097 4.097
21 H 0.215 0.785
22 H 0.236 0.764
23 H 0.251 0.749
24 H 0.013 0.987
25 H 0.013 0.987
26 H 0.078 0.922
27 H 0.164 0.836
Dipole moment (debyes) X Y Z Total
from point charges -9.353 14.936 8.422 19.532
hybrid contribution 0.433 -0.435 -0.247 0.662
sum -8.919 14.501 8.176 18.886
Atomic orbital electron populations
1.81319 1.12738 1.08173 1.08681 1.25303 0.92063 0.93080 0.93106
1.16070 0.84427 0.97206 1.02240 1.22979 0.95396 0.96966 0.93928
1.23671 0.91683 0.95454 0.93803 1.67492 1.42426 1.00873 1.06064
1.20608 0.91022 0.94344 1.00089 1.18527 0.82967 0.85497 0.79834
1.90734 1.71036 1.37187 1.48016 1.46098 1.05349 1.25794 1.55891
1.18699 0.90673 0.84997 0.91649 1.21616 0.90288 1.08642 1.38651
0.89871 1.26053 1.05255 0.94275 0.93996 1.70137 1.36604 1.12187
1.37910 0.85101 0.77149 0.78867 0.78040 1.17627 1.20471 1.20464
1.22045 0.93358 0.98352 0.95901 0.78498 0.76376 0.74864 0.98702
0.98719 0.92238 0.83594
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.43 -10.25 18.54 19.00 0.35 -9.90 15
2 C 0.28 5.30 15.40 88.33 1.36 6.66 15
3 C 0.01 0.19 5.75 -21.23 -0.12 0.07 15
4 C -0.07 -0.63 9.86 22.72 0.22 -0.41 15
5 C 0.11 1.34 11.17 84.78 0.95 2.28 15
6 N -0.46 -10.54 9.51 -185.15 -1.76 -12.30 15
7 C 0.08 2.21 6.75 41.87 0.28 2.49 15
8 C 0.55 22.54 7.81 86.88 0.68 23.22 15
9 O -0.59 -28.78 16.32 -3.77 -0.06 -28.84 15
10 N -0.68 -29.94 5.54 -469.40 -2.60 -32.54 15
11 C 0.26 14.40 5.43 85.63 0.46 14.86 15
12 C -0.55 -30.14 9.28 25.60 0.24 -29.90 15
13 H 0.08 4.13 7.60 -2.91 -0.02 4.11 15
14 C 0.00 0.21 5.46 84.66 0.46 0.67 15
15 N -0.93 -55.62 13.29 21.45 0.28 -55.34 15
16 Si 0.99 42.07 29.54 68.60 2.03 44.09 15
17 H -0.25 -9.98 7.11 99.48 0.71 -9.27 15
18 H -0.28 -11.70 7.11 99.48 0.71 -11.00 15
19 H -0.28 -11.70 7.11 99.48 0.71 -10.99 15
20 C -0.07 -1.75 9.38 22.89 0.21 -1.54 15
21 H 0.20 0.04 8.06 -2.91 -0.02 0.01 15
22 H 0.22 0.58 8.06 -2.91 -0.02 0.56 15
23 H 0.41 15.88 7.65 -92.71 -0.71 15.17 15
24 H 0.00 -0.30 8.14 -2.39 -0.02 -0.32 15
25 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 15
26 H 0.27 14.96 8.31 -92.71 -0.77 14.19 15
27 H 0.15 3.80 7.64 -2.91 -0.02 3.78 15
Total: -1.00 -74.00 263.93 3.50 -70.50
By element:
Atomic # 1 Polarization: 5.39 SS G_CDS: 0.51 Total: 5.90 kcal
Atomic # 6 Polarization: 13.67 SS G_CDS: 4.75 Total: 18.42 kcal
Atomic # 7 Polarization: -106.35 SS G_CDS: -3.72 Total: -110.08 kcal
Atomic # 8 Polarization: -28.78 SS G_CDS: -0.06 Total: -28.84 kcal
Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal
Total: -74.00 3.50 -70.50 kcal
The number of atoms in the molecule is 27
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000357387013.mol2 27
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 73.005 kcal
(2) G-P(sol) polarization free energy of solvation -74.005 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.999 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.502 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.503 kcal
(6) G-S(sol) free energy of system = (1) + (5) 2.503 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds