Wall clock time and date at job start Mon Mar 30 2020 02:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39921 * 120.89531 * 209.70665 * 3 2 1 5 5 C 1.38400 * 119.17991 * 179.97438 * 4 3 2 6 6 N 1.31512 * 121.05047 * 359.97438 * 5 4 3 7 7 C 1.32713 * 121.98189 * 359.70461 * 6 5 4 8 8 C 1.48170 * 119.65329 * 180.31773 * 7 6 5 9 9 O 1.21518 * 119.99506 * 180.26884 * 8 7 6 10 10 N 1.34774 * 120.00356 * 0.26669 * 8 7 6 11 11 C 1.46498 * 120.00341 * 180.02562 * 10 8 7 12 12 C 1.50691 * 109.47280 * 179.97438 * 11 10 8 13 13 H 1.07999 * 120.00115 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99877 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00130 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99964 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47176 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46961 * 119.99504 * 16 14 12 19 19 H 1.48500 * 109.47261 * 239.99774 * 16 14 12 20 20 C 1.39166 * 120.68908 * 0.58822 * 7 6 5 21 21 H 1.07996 * 120.40536 * 359.95016 * 4 3 2 22 22 H 1.08004 * 119.47261 * 179.97438 * 5 4 3 23 23 H 0.96996 * 119.99794 * 359.97438 * 10 8 7 24 24 H 1.08999 * 109.47282 * 300.00667 * 11 10 8 25 25 H 1.09007 * 109.46740 * 59.99869 * 11 10 8 26 26 H 0.97003 * 119.99998 * 180.02562 * 15 14 12 27 27 H 1.08002 * 120.55712 * 179.70814 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2860 1.0438 0.5950 5 6 4.6694 1.0082 0.5749 6 7 5.3141 0.0122 0.0077 7 6 4.6776 -1.0025 -0.5638 8 6 5.4559 -2.1015 -1.1818 9 8 4.8795 -3.0311 -1.7110 10 7 6.8031 -2.0700 -1.1570 11 6 7.5726 -3.1563 -1.7686 12 6 9.0453 -2.8818 -1.6063 13 1 9.3753 -1.9875 -1.0987 14 6 9.9717 -3.7721 -2.1066 15 7 9.5700 -4.8609 -2.7252 16 14 11.7975 -3.4315 -1.9060 17 1 11.9851 -2.1504 -1.1788 18 1 12.4249 -4.5345 -1.1345 19 1 12.4338 -3.3393 -3.2446 20 6 3.2868 -1.0423 -0.5935 21 1 2.7670 1.8668 1.0637 22 1 5.2283 1.8112 1.0324 23 1 7.2631 -1.3277 -0.7349 24 1 7.3221 -4.0983 -1.2808 25 1 7.3301 -3.2208 -2.8294 26 1 10.2218 -5.4874 -3.0769 27 1 2.7711 -1.8668 -1.0632 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357387013.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:52 Heat of formation + Delta-G solvation = 2.502654 kcal Electronic energy + Delta-G solvation = -14389.742011 eV Core-core repulsion = 11725.760757 eV Total energy + Delta-G solvation = -2663.981253 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.075 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.73122 -39.97635 -37.88305 -36.22930 -34.50460 -33.77893 -32.62341 -29.41356 -26.40703 -25.57530 -24.14500 -22.25386 -20.53502 -18.68182 -17.98357 -17.39862 -16.99744 -16.65604 -16.43841 -16.16463 -15.37723 -15.37186 -14.72413 -14.41171 -14.25361 -14.17110 -13.99839 -13.78296 -12.98601 -12.88849 -12.73412 -12.20950 -11.44923 -11.33961 -11.01623 -10.80112 -10.67826 -10.37095 -9.83659 -8.27108 -6.43080 -0.62687 -0.28972 1.36845 1.46408 1.47208 1.54714 1.61135 2.05270 2.20031 2.42832 2.58091 2.84055 3.08178 3.19113 3.69790 3.79220 3.85945 4.35145 4.49328 4.66278 4.87056 5.10326 5.24064 5.43309 5.46350 5.66403 5.84986 6.20311 6.57818 6.66655 6.89951 7.22370 7.37422 8.85142 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.055835 B = 0.004823 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.353354 B = 5804.291070 C = 6290.489887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C 0.280 3.720 3 C 0.012 3.988 4 C -0.070 4.070 5 C 0.114 3.886 6 N -0.457 5.457 7 C 0.076 3.924 8 C 0.546 3.454 9 O -0.588 6.588 10 N -0.683 5.683 11 C 0.262 3.738 12 C -0.554 4.554 13 H 0.083 0.917 14 C 0.004 3.996 15 N -0.930 5.930 16 Si 0.985 3.015 17 H -0.253 1.253 18 H -0.279 1.279 19 H -0.279 1.279 20 C -0.073 4.073 21 H 0.198 0.802 22 H 0.220 0.780 23 H 0.414 0.586 24 H -0.005 1.005 25 H -0.005 1.005 26 H 0.269 0.731 27 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.215 15.811 8.923 19.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.109 5.109 2 C -0.036 4.036 3 C 0.001 3.999 4 C -0.093 4.093 5 C -0.046 4.046 6 N -0.169 5.169 7 C -0.061 4.061 8 C 0.332 3.668 9 O -0.470 6.470 10 N -0.331 5.331 11 C 0.140 3.860 12 C -0.592 4.592 13 H 0.101 0.899 14 C -0.196 4.196 15 N -0.568 5.568 16 Si 0.808 3.192 17 H -0.176 1.176 18 H -0.205 1.205 19 H -0.205 1.205 20 C -0.097 4.097 21 H 0.215 0.785 22 H 0.236 0.764 23 H 0.251 0.749 24 H 0.013 0.987 25 H 0.013 0.987 26 H 0.078 0.922 27 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.353 14.936 8.422 19.532 hybrid contribution 0.433 -0.435 -0.247 0.662 sum -8.919 14.501 8.176 18.886 Atomic orbital electron populations 1.81319 1.12738 1.08173 1.08681 1.25303 0.92063 0.93080 0.93106 1.16070 0.84427 0.97206 1.02240 1.22979 0.95396 0.96966 0.93928 1.23671 0.91683 0.95454 0.93803 1.67492 1.42426 1.00873 1.06064 1.20608 0.91022 0.94344 1.00089 1.18527 0.82967 0.85497 0.79834 1.90734 1.71036 1.37187 1.48016 1.46098 1.05349 1.25794 1.55891 1.18699 0.90673 0.84997 0.91649 1.21616 0.90288 1.08642 1.38651 0.89871 1.26053 1.05255 0.94275 0.93996 1.70137 1.36604 1.12187 1.37910 0.85101 0.77149 0.78867 0.78040 1.17627 1.20471 1.20464 1.22045 0.93358 0.98352 0.95901 0.78498 0.76376 0.74864 0.98702 0.98719 0.92238 0.83594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -10.25 18.54 19.00 0.35 -9.90 15 2 C 0.28 5.30 15.40 88.33 1.36 6.66 15 3 C 0.01 0.19 5.75 -21.23 -0.12 0.07 15 4 C -0.07 -0.63 9.86 22.72 0.22 -0.41 15 5 C 0.11 1.34 11.17 84.78 0.95 2.28 15 6 N -0.46 -10.54 9.51 -185.15 -1.76 -12.30 15 7 C 0.08 2.21 6.75 41.87 0.28 2.49 15 8 C 0.55 22.54 7.81 86.88 0.68 23.22 15 9 O -0.59 -28.78 16.32 -3.77 -0.06 -28.84 15 10 N -0.68 -29.94 5.54 -469.40 -2.60 -32.54 15 11 C 0.26 14.40 5.43 85.63 0.46 14.86 15 12 C -0.55 -30.14 9.28 25.60 0.24 -29.90 15 13 H 0.08 4.13 7.60 -2.91 -0.02 4.11 15 14 C 0.00 0.21 5.46 84.66 0.46 0.67 15 15 N -0.93 -55.62 13.29 21.45 0.28 -55.34 15 16 Si 0.99 42.07 29.54 68.60 2.03 44.09 15 17 H -0.25 -9.98 7.11 99.48 0.71 -9.27 15 18 H -0.28 -11.70 7.11 99.48 0.71 -11.00 15 19 H -0.28 -11.70 7.11 99.48 0.71 -10.99 15 20 C -0.07 -1.75 9.38 22.89 0.21 -1.54 15 21 H 0.20 0.04 8.06 -2.91 -0.02 0.01 15 22 H 0.22 0.58 8.06 -2.91 -0.02 0.56 15 23 H 0.41 15.88 7.65 -92.71 -0.71 15.17 15 24 H 0.00 -0.30 8.14 -2.39 -0.02 -0.32 15 25 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 15 26 H 0.27 14.96 8.31 -92.71 -0.77 14.19 15 27 H 0.15 3.80 7.64 -2.91 -0.02 3.78 15 Total: -1.00 -74.00 263.93 3.50 -70.50 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: 0.51 Total: 5.90 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: 4.75 Total: 18.42 kcal Atomic # 7 Polarization: -106.35 SS G_CDS: -3.72 Total: -110.08 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -0.06 Total: -28.84 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Total: -74.00 3.50 -70.50 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357387013.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.005 kcal (2) G-P(sol) polarization free energy of solvation -74.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds