Wall clock time and date at job start Mon Mar 30 2020 02:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30845 * 1 3 3 Si 1.86801 * 120.00138 * 2 1 4 4 H 1.48503 * 109.47072 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47077 * 299.99802 * 3 2 1 6 6 H 1.48499 * 109.47080 * 59.99922 * 3 2 1 7 7 C 1.39959 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00205 * 163.12042 * 7 2 1 9 9 C 1.41067 * 120.00246 * 343.11396 * 7 2 1 10 10 C 1.40354 * 120.25075 * 334.49046 * 9 7 2 11 11 C 1.39349 * 120.00990 * 179.97438 * 10 9 7 12 12 C 1.47766 * 119.75351 * 179.97438 * 11 10 9 13 13 N 1.34774 * 119.99450 * 179.97438 * 12 11 10 14 14 O 1.21559 * 120.00119 * 359.97438 * 12 11 10 15 15 C 1.39578 * 120.48761 * 0.27351 * 11 10 9 16 16 C 1.39659 * 120.20096 * 359.49215 * 15 11 10 17 17 N 1.35935 * 133.28294 * 180.17937 * 16 15 11 18 18 C 1.30079 * 109.44063 * 180.27052 * 17 16 15 19 19 N 1.36065 * 110.00895 * 0.02562 * 18 17 16 20 20 H 0.97004 * 126.27301 * 180.02562 * 19 18 17 21 21 C 1.37162 * 107.45797 * 359.97438 * 19 18 17 22 22 H 0.97004 * 119.99991 * 0.02562 * 1 2 3 23 23 H 1.08000 * 119.99710 * 359.97158 * 10 9 7 24 24 H 0.96998 * 120.00420 * 0.02562 * 13 12 11 25 25 H 0.97007 * 119.99976 * 179.72214 * 13 12 11 26 26 H 1.08001 * 119.90005 * 179.74229 * 15 11 10 27 27 H 1.08005 * 124.99983 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.7025 1.3463 -0.0006 5 1 1.8838 2.3964 -1.2125 6 1 1.8837 2.3964 1.2125 7 6 2.0082 -1.2121 0.0005 8 1 3.0533 -1.2325 -0.2710 9 6 1.3485 -2.4073 0.3559 10 6 0.2220 -2.3713 1.1923 11 6 -0.4262 -3.5550 1.5398 12 6 -1.6114 -3.5106 2.4212 13 7 -2.2423 -4.6524 2.7599 14 8 -2.0172 -2.4443 2.8407 15 6 0.0395 -4.7827 1.0664 16 6 1.1563 -4.8350 0.2293 17 7 1.8211 -5.8552 -0.3748 18 6 2.8186 -5.3768 -1.0591 19 7 2.8588 -4.0221 -0.9383 20 1 3.5054 -3.4281 -1.3508 21 6 1.8169 -3.6501 -0.1275 22 1 -0.4850 0.8401 -0.0004 23 1 -0.1426 -1.4262 1.5668 24 1 -1.9182 -5.5032 2.4254 25 1 -3.0179 -4.6237 3.3418 26 1 -0.4676 -5.6946 1.3450 27 1 3.5133 -5.9679 -1.6374 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396085795.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:58 Heat of formation + Delta-G solvation = 17.941319 kcal Electronic energy + Delta-G solvation = -15374.191917 eV Core-core repulsion = 12710.880134 eV Total energy + Delta-G solvation = -2663.311783 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.075 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.94214 -38.66851 -35.81738 -33.84705 -32.82562 -31.89389 -29.32280 -28.13414 -25.40092 -22.98964 -21.64438 -20.43772 -19.58266 -17.72377 -16.97969 -16.76148 -15.68880 -15.37564 -14.99580 -14.19828 -13.78823 -13.72409 -13.24474 -12.84146 -12.58403 -11.97755 -11.62761 -11.32225 -10.79394 -10.47105 -10.29630 -10.26543 -9.73393 -9.24125 -9.13324 -9.07652 -9.01603 -7.36673 -7.09816 -6.89342 -4.45787 2.02518 2.47607 2.92091 3.00900 3.04274 3.74601 3.82514 3.95250 3.95929 4.28126 4.62280 5.12371 5.46438 5.70354 5.93787 6.34119 6.56990 6.71408 6.80597 6.94315 7.04243 7.35256 7.44361 7.65226 7.83007 7.98554 8.06962 8.29285 8.32977 8.57974 8.61841 8.88961 9.03716 10.02626 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.018765 B = 0.012035 C = 0.007490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.794304 B = 2325.893722 C = 3737.511169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.074 3.926 3 Si 0.911 3.089 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.268 1.268 7 C -0.458 4.458 8 H 0.076 0.924 9 C 0.121 3.879 10 C -0.130 4.130 11 C -0.104 4.104 12 C 0.569 3.431 13 N -0.862 5.862 14 O -0.550 6.550 15 C -0.178 4.178 16 C 0.063 3.937 17 N -0.515 5.515 18 C 0.218 3.782 19 N -0.588 5.588 20 H 0.414 0.586 21 C -0.004 4.004 22 H 0.287 0.713 23 H 0.140 0.860 24 H 0.399 0.601 25 H 0.392 0.608 26 H 0.100 0.900 27 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.886 -4.497 -0.797 5.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.147 4.147 3 Si 0.735 3.265 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.193 1.193 7 C -0.486 4.486 8 H 0.095 0.905 9 C 0.116 3.884 10 C -0.153 4.153 11 C -0.109 4.109 12 C 0.357 3.643 13 N -0.426 5.426 14 O -0.429 6.429 15 C -0.201 4.201 16 C -0.054 4.054 17 N -0.237 5.237 18 C -0.068 4.068 19 N -0.198 5.198 20 H 0.251 0.749 21 C -0.114 4.114 22 H 0.098 0.902 23 H 0.157 0.843 24 H 0.229 0.771 25 H 0.222 0.778 26 H 0.118 0.882 27 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 2.275 -4.434 -0.536 5.012 hybrid contribution 0.765 1.321 -0.388 1.575 sum 3.039 -3.113 -0.924 4.448 Atomic orbital electron populations 1.69807 1.07519 1.29904 1.32160 1.25912 0.94821 1.01451 0.92501 0.86209 0.80642 0.80756 0.78884 1.18470 1.19847 1.19322 1.19403 0.97442 0.91198 1.40606 0.90539 1.16585 0.92557 0.88548 0.90708 1.21097 0.97700 0.96691 0.99858 1.19258 0.96262 0.94520 1.00875 1.18653 0.83121 0.83077 0.79438 1.43851 1.34368 1.09793 1.54549 1.90733 1.67050 1.29744 1.55338 1.19397 0.99335 0.95244 1.06122 1.18572 0.97848 0.88075 1.00953 1.70340 1.07993 1.31491 1.13903 1.24892 0.99051 0.81449 1.01442 1.42681 1.26740 1.08051 1.42351 0.74910 1.19364 0.93840 0.97058 1.01087 0.90218 0.84263 0.77092 0.77825 0.88189 0.78457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.69 10.96 55.55 0.61 -19.08 15 2 C 0.07 1.78 5.15 -17.33 -0.09 1.69 15 3 Si 0.91 17.90 29.59 -169.99 -5.03 12.87 15 4 H -0.26 -5.00 7.11 56.52 0.40 -4.60 15 5 H -0.27 -5.27 7.11 56.52 0.40 -4.87 15 6 H -0.27 -5.29 7.11 56.52 0.40 -4.89 15 7 C -0.46 -11.33 9.04 -37.87 -0.34 -11.67 15 8 H 0.08 1.76 7.90 -52.49 -0.41 1.34 15 9 C 0.12 3.09 5.56 -106.85 -0.59 2.49 15 10 C -0.13 -3.43 8.22 -38.37 -0.32 -3.75 15 11 C -0.10 -2.48 5.86 -105.09 -0.62 -3.09 15 12 C 0.57 12.46 8.04 -12.37 -0.10 12.36 15 13 N -0.86 -13.72 8.82 30.51 0.27 -13.45 15 14 O -0.55 -13.92 17.14 5.31 0.09 -13.83 15 15 C -0.18 -3.99 9.59 -38.55 -0.37 -4.36 15 16 C 0.06 1.47 7.21 -84.75 -0.61 0.86 15 17 N -0.51 -10.87 11.29 -12.09 -0.14 -11.01 15 18 C 0.22 3.75 12.97 -89.78 -1.16 2.59 15 19 N -0.59 -11.00 6.19 -11.40 -0.07 -11.07 15 20 H 0.41 6.43 8.96 -40.82 -0.37 6.07 15 21 C 0.00 -0.10 7.02 -83.53 -0.59 -0.69 15 22 H 0.29 6.70 8.30 -40.82 -0.34 6.36 15 23 H 0.14 3.94 5.73 -52.49 -0.30 3.64 15 24 H 0.40 5.47 6.82 -40.82 -0.28 5.19 15 25 H 0.39 5.23 8.93 -40.82 -0.36 4.87 15 26 H 0.10 1.92 6.35 -52.49 -0.33 1.59 15 27 H 0.20 2.26 8.06 -52.48 -0.42 1.83 15 LS Contribution 245.01 15.07 3.69 3.69 Total: -1.00 -31.94 245.01 -6.98 -38.92 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -1.61 Total: 16.53 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -4.79 Total: -3.57 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 0.67 Total: -54.60 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.09 Total: -13.83 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -31.94 -6.98 -38.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396085795.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.861 kcal (2) G-P(sol) polarization free energy of solvation -31.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds