Wall clock time and date at job start Mon Mar 30 2020 02:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30845 * 1 3 3 Si 1.86801 * 120.00138 * 2 1 4 4 H 1.48503 * 109.47072 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47077 * 299.99802 * 3 2 1 6 6 H 1.48499 * 109.47080 * 59.99922 * 3 2 1 7 7 C 1.39959 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00205 * 163.12042 * 7 2 1 9 9 C 1.41067 * 120.00246 * 343.11396 * 7 2 1 10 10 C 1.40354 * 120.25075 * 334.49046 * 9 7 2 11 11 C 1.39349 * 120.00990 * 179.97438 * 10 9 7 12 12 C 1.47766 * 119.75351 * 179.97438 * 11 10 9 13 13 N 1.34774 * 119.99450 * 179.97438 * 12 11 10 14 14 O 1.21559 * 120.00119 * 359.97438 * 12 11 10 15 15 C 1.39578 * 120.48761 * 0.27351 * 11 10 9 16 16 C 1.39659 * 120.20096 * 359.49215 * 15 11 10 17 17 N 1.35935 * 133.28294 * 180.17937 * 16 15 11 18 18 C 1.30079 * 109.44063 * 180.27052 * 17 16 15 19 19 N 1.36065 * 110.00895 * 0.02562 * 18 17 16 20 20 H 0.97004 * 126.27301 * 180.02562 * 19 18 17 21 21 C 1.37162 * 107.45797 * 359.97438 * 19 18 17 22 22 H 0.97004 * 119.99991 * 0.02562 * 1 2 3 23 23 H 1.08000 * 119.99710 * 359.97158 * 10 9 7 24 24 H 0.96998 * 120.00420 * 0.02562 * 13 12 11 25 25 H 0.97007 * 119.99976 * 179.72214 * 13 12 11 26 26 H 1.08001 * 119.90005 * 179.74229 * 15 11 10 27 27 H 1.08005 * 124.99983 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.7025 1.3463 -0.0006 5 1 1.8838 2.3964 -1.2125 6 1 1.8837 2.3964 1.2125 7 6 2.0082 -1.2121 0.0005 8 1 3.0533 -1.2325 -0.2710 9 6 1.3485 -2.4073 0.3559 10 6 0.2220 -2.3713 1.1923 11 6 -0.4262 -3.5550 1.5398 12 6 -1.6114 -3.5106 2.4212 13 7 -2.2423 -4.6524 2.7599 14 8 -2.0172 -2.4443 2.8407 15 6 0.0395 -4.7827 1.0664 16 6 1.1563 -4.8350 0.2293 17 7 1.8211 -5.8552 -0.3748 18 6 2.8186 -5.3768 -1.0591 19 7 2.8588 -4.0221 -0.9383 20 1 3.5054 -3.4281 -1.3508 21 6 1.8169 -3.6501 -0.1275 22 1 -0.4850 0.8401 -0.0004 23 1 -0.1426 -1.4262 1.5668 24 1 -1.9182 -5.5032 2.4254 25 1 -3.0179 -4.6237 3.3418 26 1 -0.4676 -5.6946 1.3450 27 1 3.5133 -5.9679 -1.6374 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396085795.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:58 Heat of formation + Delta-G solvation = -6.207786 kcal Electronic energy + Delta-G solvation = -15375.239100 eV Core-core repulsion = 12710.880134 eV Total energy + Delta-G solvation = -2664.358966 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.075 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.56765 -40.39772 -37.58558 -35.61642 -34.43959 -33.54637 -31.06933 -29.84539 -27.22160 -24.66621 -23.34324 -22.10114 -21.24098 -19.39262 -18.66313 -18.33895 -17.40788 -17.05317 -16.65481 -15.85939 -15.43352 -15.40526 -14.93903 -14.55226 -14.19266 -13.70982 -13.36772 -12.93327 -12.48411 -12.27636 -12.03110 -11.92859 -11.41901 -11.00839 -10.88240 -10.70289 -10.61885 -9.13030 -8.86482 -8.67063 -6.33232 0.30307 0.71647 1.35668 1.40484 1.53231 2.05290 2.17596 2.28623 2.47946 2.75807 2.85378 3.62029 3.70455 4.25420 4.31277 4.68391 4.86520 5.00425 5.09123 5.15089 5.29594 5.66161 5.83567 5.97554 6.03896 6.18835 6.41492 6.58119 6.73260 6.80595 6.90542 7.25907 7.45724 8.27013 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.018765 B = 0.012035 C = 0.007490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.794304 B = 2325.893722 C = 3737.511169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.031 3.969 3 Si 0.985 3.015 4 H -0.249 1.249 5 H -0.265 1.265 6 H -0.272 1.272 7 C -0.484 4.484 8 H 0.088 0.912 9 C 0.097 3.903 10 C -0.168 4.168 11 C -0.118 4.118 12 C 0.567 3.433 13 N -0.828 5.828 14 O -0.594 6.594 15 C -0.168 4.168 16 C 0.041 3.959 17 N -0.541 5.541 18 C 0.252 3.748 19 N -0.581 5.581 20 H 0.429 0.571 21 C -0.024 4.024 22 H 0.289 0.711 23 H 0.107 0.893 24 H 0.414 0.586 25 H 0.410 0.590 26 H 0.132 0.868 27 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.408 -6.156 -1.701 7.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.186 4.186 3 Si 0.805 3.195 4 H -0.172 1.172 5 H -0.190 1.190 6 H -0.197 1.197 7 C -0.512 4.512 8 H 0.106 0.894 9 C 0.093 3.907 10 C -0.191 4.191 11 C -0.123 4.123 12 C 0.355 3.645 13 N -0.393 5.393 14 O -0.476 6.476 15 C -0.190 4.190 16 C -0.076 4.076 17 N -0.264 5.264 18 C -0.035 4.035 19 N -0.192 5.192 20 H 0.269 0.731 21 C -0.134 4.134 22 H 0.099 0.901 23 H 0.125 0.875 24 H 0.247 0.753 25 H 0.242 0.758 26 H 0.150 0.850 27 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 3.799 -6.155 -1.446 7.376 hybrid contribution 0.334 1.591 -0.160 1.634 sum 4.133 -4.564 -1.606 6.363 Atomic orbital electron populations 1.69913 1.09322 1.30807 1.33775 1.26839 0.95391 1.04886 0.91452 0.85109 0.79635 0.76002 0.78706 1.17193 1.19000 1.19741 1.19696 0.98032 0.91757 1.41764 0.89388 1.16834 0.92832 0.90031 0.91012 1.20943 0.99606 0.96462 1.02079 1.19443 0.96978 0.94437 1.01445 1.18521 0.82990 0.83820 0.79218 1.43470 1.33832 1.08636 1.53346 1.90708 1.68162 1.31677 1.57053 1.19730 0.98905 0.95665 1.04713 1.18966 0.98368 0.88886 1.01390 1.70380 1.09518 1.31033 1.15481 1.26159 0.97742 0.80865 0.98699 1.42735 1.25905 1.09087 1.41469 0.73120 1.19411 0.95423 0.96477 1.02116 0.90054 0.87474 0.75332 0.75797 0.84990 0.72164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.74 10.96 21.83 0.24 -43.50 15 2 C 0.03 1.53 5.15 85.26 0.44 1.97 15 3 Si 0.99 37.33 29.59 68.60 2.03 39.36 15 4 H -0.25 -8.82 7.11 99.48 0.71 -8.11 15 5 H -0.27 -9.61 7.11 99.48 0.71 -8.90 15 6 H -0.27 -10.38 7.11 99.48 0.71 -9.67 15 7 C -0.48 -24.53 9.04 23.38 0.21 -24.32 15 8 H 0.09 4.05 7.90 -2.91 -0.02 4.03 15 9 C 0.10 5.14 5.56 -21.31 -0.12 5.02 15 10 C -0.17 -9.26 8.22 23.05 0.19 -9.08 15 11 C -0.12 -5.74 5.86 -20.17 -0.12 -5.85 15 12 C 0.57 25.14 8.04 86.76 0.70 25.84 15 13 N -0.83 -25.11 8.82 -175.66 -1.55 -26.66 15 14 O -0.59 -31.19 17.14 -3.90 -0.07 -31.26 15 15 C -0.17 -7.36 9.59 22.94 0.22 -7.14 15 16 C 0.04 1.88 7.21 39.35 0.28 2.16 15 17 N -0.54 -21.20 11.29 -192.17 -2.17 -23.37 15 18 C 0.25 7.58 12.97 180.06 2.34 9.92 15 19 N -0.58 -20.25 6.19 -189.99 -1.18 -21.43 15 20 H 0.43 12.18 8.96 -92.71 -0.83 11.35 15 21 C -0.02 -1.11 7.02 39.57 0.28 -0.83 15 22 H 0.29 14.26 8.30 -92.71 -0.77 13.49 15 23 H 0.11 6.54 5.73 -2.91 -0.02 6.52 15 24 H 0.41 10.28 6.82 -92.71 -0.63 9.65 15 25 H 0.41 10.15 8.93 -92.70 -0.83 9.33 15 26 H 0.13 4.74 6.35 -2.91 -0.02 4.72 15 27 H 0.26 4.19 8.06 -2.91 -0.02 4.17 15 Total: -1.00 -73.32 245.01 0.70 -72.62 By element: Atomic # 1 Polarization: 37.59 SS G_CDS: -1.02 Total: 36.57 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 4.42 Total: -2.33 kcal Atomic # 7 Polarization: -110.30 SS G_CDS: -4.66 Total: -114.96 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -0.07 Total: -31.26 kcal Atomic # 14 Polarization: 37.33 SS G_CDS: 2.03 Total: 39.36 kcal Total: -73.32 0.70 -72.62 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396085795.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.408 kcal (2) G-P(sol) polarization free energy of solvation -73.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds