Wall clock time and date at job start Mon Mar 30 2020 02:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31329 * 1 3 3 Si 1.86804 * 119.99853 * 2 1 4 4 H 1.48500 * 109.46889 * 239.99529 * 3 2 1 5 5 H 1.48495 * 109.47372 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47188 * 120.00050 * 3 2 1 7 7 C 1.38945 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00176 * 180.02562 * 7 2 1 9 9 N 1.37160 * 120.00019 * 0.02562 * 7 2 1 10 10 N 1.40069 * 126.02949 * 0.02632 * 9 7 2 11 11 C 1.31907 * 108.27313 * 180.02562 * 10 9 7 12 12 C 1.48226 * 125.88504 * 180.02562 * 11 10 9 13 13 C 1.39873 * 120.54904 * 359.96991 * 12 11 10 14 14 C 1.38384 * 118.30158 * 179.97438 * 13 12 11 15 15 C 1.38333 * 119.29548 * 359.97438 * 14 13 12 16 16 N 1.31913 * 121.05435 * 0.02562 * 15 14 13 17 17 C 1.31726 * 121.85645 * 359.72367 * 16 15 14 18 18 C 1.40989 * 108.22241 * 359.97438 * 11 10 9 19 19 C 1.35610 * 107.86944 * 0.27007 * 18 11 10 20 20 O 1.35688 * 126.15091 * 179.73612 * 19 18 11 21 21 H 0.96999 * 120.00048 * 0.02562 * 1 2 3 22 22 H 1.07998 * 120.85199 * 359.97438 * 13 12 11 23 23 H 1.07997 * 120.34804 * 180.02562 * 14 13 12 24 24 H 1.08001 * 119.47453 * 179.97438 * 15 14 13 25 25 H 1.08002 * 119.70851 * 180.29141 * 17 16 15 26 26 H 1.08002 * 126.06037 * 179.97438 * 18 11 10 27 27 H 0.96696 * 114.00205 * 90.01740 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2473 1.6178 0.0000 4 1 3.1011 1.6964 -1.2125 5 1 1.2823 2.7465 -0.0006 6 1 3.1010 1.6965 1.2125 7 6 2.0080 -1.2033 0.0005 8 1 3.0881 -1.2033 0.0010 9 7 1.3223 -2.3911 0.0005 10 7 -0.0707 -2.5383 -0.0005 11 6 -0.3504 -3.8274 0.0004 12 6 -1.7082 -4.4218 -0.0007 13 6 -2.8426 -3.6034 -0.0023 14 6 -4.0875 -4.2077 -0.0039 15 6 -4.1697 -5.5886 -0.0043 16 7 -3.0820 -6.3350 -0.0028 17 6 -1.8757 -5.8059 -0.0062 18 6 0.8649 -4.5422 0.0015 19 6 1.8779 -3.6407 0.0073 20 8 3.2042 -3.9271 0.0151 21 1 -0.4850 0.8400 -0.0004 22 1 -2.7493 -2.5275 -0.0024 23 1 -4.9854 -3.6075 -0.0056 24 1 -5.1398 -6.0632 -0.0051 25 1 -1.0088 -6.4499 -0.0095 26 1 0.9702 -5.6171 0.0028 27 1 3.5939 -4.0100 -0.8660 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409436870.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:26 Heat of formation + Delta-G solvation = 69.613759 kcal Electronic energy + Delta-G solvation = -15110.498754 eV Core-core repulsion = 12449.427657 eV Total energy + Delta-G solvation = -2661.071097 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.075 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.97147 -39.13803 -36.04688 -33.94634 -32.19339 -31.36534 -29.56257 -27.75160 -25.31394 -23.09979 -22.90647 -20.14842 -19.56832 -18.26338 -16.77127 -16.35170 -15.57647 -15.14713 -14.72227 -14.35048 -13.71045 -13.36875 -13.10954 -12.96063 -12.55892 -12.43131 -12.03104 -11.33139 -11.21406 -11.09757 -10.78385 -10.29339 -10.02129 -9.26677 -9.10556 -8.89846 -8.83288 -7.70634 -7.34421 -6.76377 -4.43738 1.46711 1.80232 2.83115 2.96165 2.99908 3.27016 3.66673 3.82530 4.24366 4.64550 4.81135 4.89164 5.16106 5.32115 5.55950 5.62473 5.75289 5.91976 6.24291 6.48646 6.64452 6.72664 6.88623 6.91870 7.21026 7.25145 7.53660 7.89513 8.14528 8.42859 8.50839 9.18699 9.39723 10.18968 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.032081 B = 0.007743 C = 0.006255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.590826 B = 3615.440298 C = 4475.694689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.046 3.954 3 Si 0.938 3.062 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.312 4.312 8 H 0.121 0.879 9 N -0.142 5.142 10 N -0.233 5.233 11 C -0.002 4.002 12 C -0.010 4.010 13 C -0.069 4.069 14 C -0.171 4.171 15 C 0.066 3.934 16 N -0.486 5.486 17 C 0.093 3.907 18 C -0.274 4.274 19 C 0.126 3.874 20 O -0.467 6.467 21 H 0.279 0.721 22 H 0.142 0.858 23 H 0.128 0.872 24 H 0.146 0.854 25 H 0.154 0.846 26 H 0.128 0.872 27 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.344 -2.841 -1.581 4.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.172 4.172 3 Si 0.761 3.239 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.446 4.446 8 H 0.138 0.862 9 N 0.081 4.919 10 N -0.070 5.070 11 C -0.151 4.151 12 C -0.014 4.014 13 C -0.096 4.096 14 C -0.191 4.191 15 C -0.092 4.092 16 N -0.195 5.195 17 C -0.066 4.066 18 C -0.307 4.307 19 C -0.042 4.042 20 O -0.267 6.267 21 H 0.089 0.911 22 H 0.160 0.840 23 H 0.146 0.854 24 H 0.164 0.836 25 H 0.171 0.829 26 H 0.145 0.855 27 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -3.069 -2.490 -0.956 4.067 hybrid contribution 1.034 0.959 -0.508 1.499 sum -2.035 -1.532 -1.465 2.938 Atomic orbital electron populations 1.70184 1.06255 1.28572 1.34053 1.25688 0.95782 1.00497 0.95247 0.85824 0.79214 0.79076 0.79752 1.18977 1.19929 1.18922 1.20016 0.92190 0.80770 1.51611 0.86163 1.45510 1.04056 1.04005 1.38348 1.78610 0.88364 1.13214 1.26781 1.19996 0.91129 0.92711 1.11284 1.18941 0.91186 0.93549 0.97698 1.21792 0.91194 1.01403 0.95170 1.22003 0.98184 0.96179 1.02762 1.22544 0.96923 0.90882 0.98805 1.67571 0.98745 1.40737 1.12400 1.22705 0.94629 0.92095 0.97123 1.20378 0.90718 0.97883 1.21684 1.18557 0.83285 0.85284 1.17043 1.84866 1.18941 1.90809 1.32127 0.91087 0.84028 0.85410 0.83629 0.82893 0.85451 0.77980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.08 11.81 55.49 0.66 -19.42 15 2 C 0.05 1.14 5.50 -17.51 -0.10 1.04 15 3 Si 0.94 18.25 29.55 -169.99 -5.02 13.23 15 4 H -0.27 -5.00 7.11 56.52 0.40 -4.60 15 5 H -0.27 -5.24 7.11 56.52 0.40 -4.84 15 6 H -0.26 -5.08 7.11 56.52 0.40 -4.68 15 7 C -0.31 -8.10 10.17 -14.91 -0.15 -8.25 15 8 H 0.12 2.87 7.83 -52.48 -0.41 2.46 15 9 N -0.14 -3.83 3.74 -11.72 -0.04 -3.87 15 10 N -0.23 -6.32 10.13 33.45 0.34 -5.98 15 11 C 0.00 -0.05 7.00 -82.69 -0.58 -0.63 15 12 C -0.01 -0.20 5.89 -104.74 -0.62 -0.82 15 13 C -0.07 -1.33 9.82 -38.92 -0.38 -1.71 15 14 C -0.17 -2.69 10.10 -39.49 -0.40 -3.09 15 15 C 0.07 1.02 11.17 -17.48 -0.20 0.82 15 16 N -0.49 -8.61 10.35 -12.94 -0.13 -8.74 15 17 C 0.09 1.74 10.75 -17.16 -0.18 1.55 15 18 C -0.27 -6.33 10.21 -39.48 -0.40 -6.73 15 19 C 0.13 3.07 7.94 -16.30 -0.13 2.94 15 20 O -0.47 -9.75 13.55 -18.77 -0.25 -10.01 15 21 H 0.28 6.67 8.31 -40.82 -0.34 6.33 15 22 H 0.14 2.89 7.93 -52.49 -0.42 2.48 15 23 H 0.13 1.59 8.06 -52.49 -0.42 1.17 15 24 H 0.15 1.73 8.06 -52.49 -0.42 1.30 15 25 H 0.15 2.58 7.05 -52.49 -0.37 2.21 15 26 H 0.13 2.53 7.35 -52.49 -0.39 2.14 15 27 H 0.37 5.74 9.06 45.56 0.41 6.15 15 LS Contribution 252.63 15.07 3.81 3.81 Total: -1.00 -30.79 252.63 -4.94 -35.73 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -1.15 Total: 10.12 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -3.14 Total: -14.87 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.82 Total: -38.01 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: -0.25 Total: -10.01 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.02 Total: 13.23 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -30.79 -4.94 -35.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409436870.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.344 kcal (2) G-P(sol) polarization free energy of solvation -30.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds