Wall clock time and date at job start Mon Mar 30 2020 02:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31329 * 1 3 3 Si 1.86804 * 119.99853 * 2 1 4 4 H 1.48500 * 109.46889 * 239.99529 * 3 2 1 5 5 H 1.48495 * 109.47372 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47188 * 120.00050 * 3 2 1 7 7 C 1.38945 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00176 * 180.02562 * 7 2 1 9 9 N 1.37160 * 120.00019 * 0.02562 * 7 2 1 10 10 N 1.40069 * 126.02949 * 0.02632 * 9 7 2 11 11 C 1.31907 * 108.27313 * 180.02562 * 10 9 7 12 12 C 1.48226 * 125.88504 * 180.02562 * 11 10 9 13 13 C 1.39873 * 120.54904 * 359.96991 * 12 11 10 14 14 C 1.38384 * 118.30158 * 179.97438 * 13 12 11 15 15 C 1.38333 * 119.29548 * 359.97438 * 14 13 12 16 16 N 1.31913 * 121.05435 * 0.02562 * 15 14 13 17 17 C 1.31726 * 121.85645 * 359.72367 * 16 15 14 18 18 C 1.40989 * 108.22241 * 359.97438 * 11 10 9 19 19 C 1.35610 * 107.86944 * 0.27007 * 18 11 10 20 20 O 1.35688 * 126.15091 * 179.73612 * 19 18 11 21 21 H 0.96999 * 120.00048 * 0.02562 * 1 2 3 22 22 H 1.07998 * 120.85199 * 359.97438 * 13 12 11 23 23 H 1.07997 * 120.34804 * 180.02562 * 14 13 12 24 24 H 1.08001 * 119.47453 * 179.97438 * 15 14 13 25 25 H 1.08002 * 119.70851 * 180.29141 * 17 16 15 26 26 H 1.08002 * 126.06037 * 179.97438 * 18 11 10 27 27 H 0.96696 * 114.00205 * 90.01740 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2473 1.6178 0.0000 4 1 3.1011 1.6964 -1.2125 5 1 1.2823 2.7465 -0.0006 6 1 3.1010 1.6965 1.2125 7 6 2.0080 -1.2033 0.0005 8 1 3.0881 -1.2033 0.0010 9 7 1.3223 -2.3911 0.0005 10 7 -0.0707 -2.5383 -0.0005 11 6 -0.3504 -3.8274 0.0004 12 6 -1.7082 -4.4218 -0.0007 13 6 -2.8426 -3.6034 -0.0023 14 6 -4.0875 -4.2077 -0.0039 15 6 -4.1697 -5.5886 -0.0043 16 7 -3.0820 -6.3350 -0.0028 17 6 -1.8757 -5.8059 -0.0062 18 6 0.8649 -4.5422 0.0015 19 6 1.8779 -3.6407 0.0073 20 8 3.2042 -3.9271 0.0151 21 1 -0.4850 0.8400 -0.0004 22 1 -2.7493 -2.5275 -0.0024 23 1 -4.9854 -3.6075 -0.0056 24 1 -5.1398 -6.0632 -0.0051 25 1 -1.0088 -6.4499 -0.0095 26 1 0.9702 -5.6171 0.0028 27 1 3.5939 -4.0100 -0.8660 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409436870.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:26 Heat of formation + Delta-G solvation = 46.815394 kcal Electronic energy + Delta-G solvation = -15111.487366 eV Core-core repulsion = 12449.427657 eV Total energy + Delta-G solvation = -2662.059709 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.075 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.72259 -40.62087 -37.76579 -35.74562 -33.77772 -32.84519 -31.23551 -29.59490 -27.10244 -24.66640 -24.33800 -21.91556 -21.28245 -20.07671 -18.45872 -17.80262 -17.21547 -16.70595 -16.32713 -15.90977 -15.44799 -14.88842 -14.77475 -14.45973 -14.24095 -13.89262 -13.73208 -12.95692 -12.91304 -12.62570 -12.31874 -11.97332 -11.69425 -10.85928 -10.79253 -10.40987 -10.38507 -9.39839 -9.21290 -8.58039 -6.36478 0.04111 0.38053 1.16030 1.35631 1.51532 1.61877 2.02176 2.18930 2.46914 2.94451 3.14829 3.40877 3.69313 4.00618 4.14408 4.15723 4.22647 4.48371 4.83833 4.91313 4.98250 5.07979 5.27301 5.28426 5.49913 5.81729 5.84040 6.09036 6.47594 6.72372 7.06346 7.37362 7.53018 8.40245 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.032081 B = 0.007743 C = 0.006255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.590826 B = 3615.440298 C = 4475.694689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.001 3.999 3 Si 1.017 2.983 4 H -0.253 1.253 5 H -0.270 1.270 6 H -0.259 1.259 7 C -0.352 4.352 8 H 0.130 0.870 9 N -0.173 5.173 10 N -0.275 5.275 11 C -0.003 4.003 12 C -0.046 4.046 13 C -0.082 4.082 14 C -0.160 4.160 15 C 0.082 3.918 16 N -0.496 5.496 17 C 0.100 3.900 18 C -0.284 4.284 19 C 0.123 3.877 20 O -0.468 6.468 21 H 0.282 0.718 22 H 0.119 0.881 23 H 0.166 0.834 24 H 0.193 0.807 25 H 0.166 0.834 26 H 0.158 0.842 27 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.234 -3.662 -1.726 5.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.212 4.212 3 Si 0.835 3.165 4 H -0.177 1.177 5 H -0.194 1.194 6 H -0.183 1.183 7 C -0.485 4.485 8 H 0.148 0.852 9 N 0.050 4.950 10 N -0.111 5.111 11 C -0.154 4.154 12 C -0.050 4.050 13 C -0.109 4.109 14 C -0.179 4.179 15 C -0.075 4.075 16 N -0.204 5.204 17 C -0.059 4.059 18 C -0.316 4.316 19 C -0.046 4.046 20 O -0.271 6.271 21 H 0.092 0.908 22 H 0.137 0.863 23 H 0.184 0.816 24 H 0.210 0.790 25 H 0.183 0.817 26 H 0.175 0.825 27 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -3.932 -3.312 -1.117 5.261 hybrid contribution 1.163 0.996 -0.471 1.602 sum -2.768 -2.316 -1.588 3.943 Atomic orbital electron populations 1.70322 1.08097 1.29621 1.35738 1.26792 0.96570 1.03931 0.93881 0.84684 0.77775 0.73861 0.80162 1.17741 1.19414 1.18293 1.20518 0.92962 0.81485 1.53494 0.85211 1.45760 1.04183 1.04945 1.40154 1.78505 0.89222 1.15134 1.28237 1.20626 0.93187 0.92153 1.09433 1.19028 0.90124 0.94808 1.01019 1.21800 0.92686 1.00453 0.96004 1.22359 0.97849 0.96857 1.00816 1.23349 0.98059 0.90780 0.95358 1.67701 0.98867 1.40981 1.12868 1.22835 0.95747 0.91077 0.96199 1.20753 0.89980 0.99218 1.21621 1.18956 0.84651 0.85059 1.15944 1.84776 1.17459 1.90530 1.34361 0.90847 0.86339 0.81607 0.79005 0.81651 0.82478 0.75050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.39 11.81 21.66 0.26 -44.13 15 2 C 0.00 0.08 5.50 84.94 0.47 0.54 15 3 Si 1.02 37.89 29.55 68.60 2.03 39.92 15 4 H -0.25 -8.87 7.11 99.48 0.71 -8.16 15 5 H -0.27 -9.69 7.11 99.48 0.71 -8.98 15 6 H -0.26 -9.29 7.11 99.48 0.71 -8.58 15 7 C -0.35 -18.91 10.17 84.03 0.85 -18.05 15 8 H 0.13 6.36 7.83 -2.91 -0.02 6.34 15 9 N -0.17 -9.64 3.74 -301.47 -1.13 -10.76 15 10 N -0.27 -15.59 10.13 -48.07 -0.49 -16.07 15 11 C 0.00 -0.15 7.00 42.46 0.30 0.15 15 12 C -0.05 -1.92 5.89 -19.94 -0.12 -2.04 15 13 C -0.08 -3.17 9.82 22.70 0.22 -2.95 15 14 C -0.16 -4.54 10.10 22.33 0.23 -4.32 15 15 C 0.08 2.19 11.17 84.70 0.95 3.14 15 16 N -0.50 -16.07 10.35 -194.84 -2.02 -18.09 15 17 C 0.10 3.57 10.75 84.99 0.91 4.48 15 18 C -0.28 -13.16 10.21 22.34 0.23 -12.93 15 19 C 0.12 6.07 7.94 83.32 0.66 6.73 15 20 O -0.47 -19.35 13.55 -90.06 -1.22 -20.57 15 21 H 0.28 14.05 8.31 -92.71 -0.77 13.28 15 22 H 0.12 5.07 7.93 -2.91 -0.02 5.04 15 23 H 0.17 3.43 8.06 -2.91 -0.02 3.41 15 24 H 0.19 3.38 8.06 -2.91 -0.02 3.36 15 25 H 0.17 5.32 7.05 -2.91 -0.02 5.30 15 26 H 0.16 6.07 7.35 -2.91 -0.02 6.05 15 27 H 0.39 11.92 9.06 -74.06 -0.67 11.25 15 Total: -1.00 -69.33 252.63 2.68 -66.65 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: 0.54 Total: 28.30 kcal Atomic # 6 Polarization: -29.95 SS G_CDS: 4.70 Total: -25.25 kcal Atomic # 7 Polarization: -85.69 SS G_CDS: -3.37 Total: -89.06 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -1.22 Total: -20.57 kcal Atomic # 14 Polarization: 37.89 SS G_CDS: 2.03 Total: 39.92 kcal Total: -69.33 2.68 -66.65 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409436870.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.470 kcal (2) G-P(sol) polarization free energy of solvation -69.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds