Wall clock time and date at job start Mon Mar 30 2020 02:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35551 * 116.99912 * 2 1 4 4 C 1.38188 * 119.97955 * 0.02562 * 3 2 1 5 5 C 1.39696 * 120.16070 * 179.97438 * 4 3 2 6 6 C 1.46784 * 119.94582 * 179.97438 * 5 4 3 7 7 O 1.21320 * 119.99808 * 0.02562 * 6 5 4 8 8 C 1.41681 * 120.11143 * 359.97438 * 5 4 3 9 9 C 1.43201 * 120.02312 * 179.97438 * 8 5 4 10 10 N 6.72562 * 117.08324 * 0.02562 * 2 1 3 11 11 C 1.38453 * 119.95887 * 0.02562 * 8 5 4 12 12 C 1.40768 * 119.84134 * 359.74512 * 11 8 5 13 13 C 1.40740 * 120.05842 * 180.24823 * 12 11 8 14 14 H 1.08001 * 120.00256 * 205.15774 * 13 12 11 15 15 C 1.40367 * 120.00218 * 25.15842 * 13 12 11 16 16 N 1.30597 * 119.99384 * 17.61333 * 15 13 12 17 17 Si 1.86796 * 120.00503 * 197.60892 * 15 13 12 18 18 H 1.48505 * 109.47107 * 89.99650 * 17 15 13 19 19 H 1.48500 * 109.47247 * 209.99982 * 17 15 13 20 20 H 1.48505 * 109.46872 * 330.00072 * 17 15 13 21 21 H 1.09006 * 109.47270 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47204 * 60.00141 * 1 2 3 23 23 H 1.08994 * 109.47506 * 300.00025 * 1 2 3 24 24 H 1.08010 * 119.91976 * 359.95424 * 4 3 2 25 25 H 1.08000 * 120.00291 * 179.97438 * 6 5 4 26 26 H 1.08004 * 120.08286 * 179.97438 * 11 8 5 27 27 H 0.97000 * 119.99763 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2078 0.0000 4 6 1.2913 2.3664 0.0005 5 6 1.9215 3.6132 0.0011 6 6 1.1170 4.8409 0.0011 7 8 -0.0942 4.7724 0.0011 8 6 3.3360 3.6946 0.0016 9 6 3.9801 4.9735 0.0016 10 7 4.4910 5.9881 0.0027 11 6 4.0952 2.5367 0.0011 12 6 3.4582 1.2814 0.0054 13 6 4.2254 0.1016 0.0102 14 1 3.8103 -0.8142 -0.3842 15 6 5.5302 0.1149 0.5276 16 7 5.9149 1.0924 1.3034 17 14 6.7162 -1.2655 0.1065 18 1 7.4673 -0.9141 -1.1255 19 1 7.6690 -1.4591 1.2289 20 1 5.9550 -2.5205 -0.1189 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 0.5138 0.8899 24 1 0.2128 2.3080 0.0002 25 1 1.6033 5.8052 0.0019 26 1 5.1736 2.5964 0.0011 27 1 6.8167 1.1019 1.6607 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575644609.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:51 Heat of formation + Delta-G solvation = -44.994558 kcal Electronic energy + Delta-G solvation = -15127.872036 eV Core-core repulsion = 12429.538398 eV Total energy + Delta-G solvation = -2698.333638 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.068 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.86145 -39.52227 -38.33950 -37.13594 -35.65580 -32.30456 -31.16055 -28.23320 -28.10683 -24.85059 -23.61127 -21.89341 -20.15850 -18.69005 -18.29432 -17.57348 -16.62205 -16.29689 -16.11077 -15.48445 -15.20084 -15.12511 -14.69326 -14.51761 -14.45459 -13.80503 -13.70441 -13.32806 -12.92802 -12.82511 -12.59549 -12.18705 -12.10195 -11.69231 -11.56009 -11.18341 -10.55749 -9.68427 -9.14487 -8.84117 -6.43387 -0.24091 0.59901 1.35194 1.45062 1.58512 1.67128 1.78659 2.09198 2.17558 2.72241 2.79479 3.09842 3.50089 3.56525 4.20334 4.43556 4.51721 4.52512 4.68459 4.81574 4.93656 5.11632 5.21210 5.41794 5.48062 5.66080 5.95538 6.21379 6.42674 6.53602 6.58223 6.68013 7.01244 8.05051 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.022345 B = 0.010050 C = 0.007082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.758465 B = 2785.498707 C = 3952.825759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.328 6.328 3 C 0.011 3.989 4 C -0.112 4.112 5 C -0.273 4.273 6 C 0.392 3.608 7 O -0.525 6.525 8 C 0.014 3.986 9 C 0.286 3.714 10 N -0.464 5.464 11 C -0.122 4.122 12 C 0.089 3.911 13 C -0.424 4.424 14 H 0.096 0.904 15 C 0.036 3.964 16 N -0.786 5.786 17 Si 0.989 3.011 18 H -0.258 1.258 19 H -0.266 1.266 20 H -0.254 1.254 21 H 0.118 0.882 22 H 0.052 0.948 23 H 0.049 0.951 24 H 0.129 0.871 25 H 0.098 0.902 26 H 0.129 0.871 27 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.391 -4.463 -1.549 4.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.242 6.242 3 C -0.035 4.035 4 C -0.132 4.132 5 C -0.278 4.278 6 C 0.259 3.741 7 O -0.406 6.406 8 C 0.010 3.990 9 C -0.027 4.027 10 N -0.141 5.141 11 C -0.145 4.145 12 C 0.085 3.915 13 C -0.449 4.449 14 H 0.114 0.886 15 C -0.185 4.185 16 N -0.409 5.409 17 Si 0.808 3.192 18 H -0.182 1.182 19 H -0.191 1.191 20 H -0.178 1.178 21 H 0.136 0.864 22 H 0.071 0.929 23 H 0.067 0.933 24 H 0.146 0.854 25 H 0.114 0.886 26 H 0.146 0.854 27 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.950 -3.015 -1.382 3.450 hybrid contribution 0.195 -0.585 0.073 0.621 sum -0.755 -3.600 -1.308 3.904 Atomic orbital electron populations 1.23146 0.78289 1.04622 1.01064 1.85897 1.21591 1.26953 1.89793 1.19228 0.91982 0.83974 1.08282 1.20888 0.99116 0.90856 1.02315 1.19607 0.91271 0.95175 1.21773 1.23649 0.88074 0.92909 0.69497 1.90402 1.18350 1.90978 1.40886 1.15873 0.91641 0.85736 1.05779 1.25949 0.92075 0.92519 0.92171 1.81115 1.09776 1.12063 1.11114 1.21057 0.99338 0.89364 1.04728 1.17343 0.88718 0.94035 0.91445 1.20071 0.97342 0.96853 1.30672 0.88599 1.27000 0.99922 0.99825 0.91718 1.69680 1.20838 1.31193 1.19171 0.85061 0.77036 0.77797 0.79280 1.18226 1.19051 1.17785 0.86388 0.92936 0.93273 0.85353 0.88603 0.85360 0.88565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.69 9.80 113.37 1.11 1.80 15 2 O -0.33 -13.15 9.74 -88.57 -0.86 -14.01 15 3 C 0.01 0.47 6.72 23.08 0.16 0.63 15 4 C -0.11 -4.64 8.55 22.61 0.19 -4.45 15 5 C -0.27 -11.22 5.91 -19.84 -0.12 -11.34 15 6 C 0.39 14.92 10.99 70.06 0.77 15.69 15 7 O -0.53 -22.13 17.13 -3.15 -0.05 -22.18 15 8 C 0.01 0.58 5.76 -21.13 -0.12 0.46 15 9 C 0.29 11.37 13.89 88.33 1.23 12.59 15 10 N -0.46 -18.59 18.54 19.00 0.35 -18.23 15 11 C -0.12 -5.51 8.35 22.94 0.19 -5.32 15 12 C 0.09 4.12 5.58 -21.23 -0.12 4.00 15 13 C -0.42 -19.29 8.70 23.40 0.20 -19.08 15 14 H 0.10 4.29 7.63 -2.91 -0.02 4.26 15 15 C 0.04 1.52 5.13 85.39 0.44 1.96 15 16 N -0.79 -34.40 10.96 21.90 0.24 -34.16 15 17 Si 0.99 31.78 29.60 68.60 2.03 33.82 15 18 H -0.26 -8.09 7.11 99.48 0.71 -7.38 15 19 H -0.27 -8.20 7.11 99.48 0.71 -7.50 15 20 H -0.25 -8.07 7.11 99.48 0.71 -7.36 15 21 H 0.12 2.63 8.14 -2.38 -0.02 2.61 15 22 H 0.05 1.44 7.65 -2.39 -0.02 1.42 15 23 H 0.05 1.39 7.65 -2.39 -0.02 1.37 15 24 H 0.13 4.95 5.81 -2.91 -0.02 4.93 15 25 H 0.10 3.24 7.17 -2.91 -0.02 3.21 15 26 H 0.13 5.92 6.17 -2.91 -0.02 5.90 15 27 H 0.30 11.82 8.29 -92.71 -0.77 11.05 15 Total: -1.00 -52.17 255.17 6.86 -45.32 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 1.22 Total: 12.52 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 3.93 Total: -3.06 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: 0.59 Total: -52.40 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -0.92 Total: -36.20 kcal Atomic # 14 Polarization: 31.78 SS G_CDS: 2.03 Total: 33.82 kcal Total: -52.17 6.86 -45.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575644609.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.321 kcal (2) G-P(sol) polarization free energy of solvation -52.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds