Wall clock time and date at job start Mon Mar 30 2020 02:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35818 * 116.99480 * 2 1 4 4 C 1.38170 * 119.67013 * 179.72999 * 3 2 1 5 5 C 1.40677 * 120.17401 * 179.72407 * 4 3 2 6 6 C 1.40849 * 120.23278 * 180.29183 * 5 4 3 7 7 H 1.07995 * 119.99617 * 154.40668 * 6 5 4 8 8 C 1.40233 * 119.99747 * 334.40276 * 6 5 4 9 9 N 1.30659 * 120.00343 * 342.89496 * 8 6 5 10 10 Si 1.86802 * 119.99809 * 162.89678 * 8 6 5 11 11 H 1.48505 * 109.46998 * 60.00109 * 10 8 6 12 12 H 1.48499 * 109.47080 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47309 * 300.00130 * 10 8 6 14 14 C 1.41894 * 119.53476 * 0.53760 * 5 4 3 15 15 C 1.43204 * 120.31378 * 179.71117 * 14 5 4 16 16 N 6.72725 * 116.75874 * 0.02562 * 2 1 3 17 17 C 1.40887 * 119.36605 * 359.73731 * 14 5 4 18 18 C 1.47150 * 120.09712 * 180.02562 * 17 14 5 19 19 O 1.21253 * 119.99990 * 179.97438 * 18 17 14 20 20 C 1.39145 * 119.67463 * 359.97438 * 3 2 1 21 21 H 1.09002 * 109.46684 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47354 * 300.00169 * 1 2 3 23 23 H 1.08987 * 109.47327 * 60.00813 * 1 2 3 24 24 H 1.08004 * 119.91394 * 359.97438 * 4 3 2 25 25 H 0.96995 * 120.00189 * 179.97438 * 9 8 6 26 26 H 1.07997 * 119.99655 * 359.97240 * 18 17 14 27 27 H 1.08000 * 119.77401 * 359.97438 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2102 0.0000 4 6 3.4257 1.2747 0.0057 5 6 4.0753 2.5225 -0.0001 6 6 5.4821 2.5897 -0.0006 7 1 5.9812 3.4561 -0.4086 8 6 6.2347 1.5315 0.5289 9 7 5.6663 0.6528 1.3112 10 14 8.0500 1.3781 0.1158 11 1 8.7670 2.5942 0.5768 12 1 8.6131 0.1836 0.7950 13 1 8.2130 1.2344 -1.3532 14 6 3.3032 3.7130 -0.0002 15 6 3.9471 4.9921 0.0001 16 7 4.4579 6.0068 0.0027 17 6 1.8971 3.6246 -0.0002 18 6 1.0807 4.8489 -0.0008 19 8 -0.1293 4.7707 -0.0012 20 6 1.2809 2.3728 -0.0005 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5136 -0.8899 24 1 4.0074 0.3647 0.0105 25 1 6.1868 -0.0793 1.6772 26 1 1.5593 5.8170 -0.0010 27 1 0.2030 2.3058 -0.0014 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575645003.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:24 Heat of formation + Delta-G solvation = -32.803852 kcal Electronic energy + Delta-G solvation = -15122.664369 eV Core-core repulsion = 12424.859359 eV Total energy + Delta-G solvation = -2697.805009 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.068 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.39763 -38.25881 -36.87316 -35.10936 -33.89244 -30.44311 -29.87619 -27.08725 -25.68939 -24.14732 -21.79837 -20.40676 -17.99346 -17.48891 -16.53318 -16.03307 -15.12899 -15.04698 -14.91062 -14.10762 -13.76060 -13.38735 -13.08454 -12.92721 -12.71084 -12.00669 -11.83929 -11.51964 -11.41612 -11.35065 -11.23354 -10.80663 -10.46499 -10.25638 -10.11641 -9.48273 -9.21723 -7.99847 -7.38861 -7.13713 -4.87060 1.33375 2.25550 2.89081 2.91079 2.94443 3.25981 3.67080 3.72111 3.97489 4.02601 4.36036 4.79219 5.16625 5.27650 5.52494 5.60255 5.74612 5.80852 6.05344 6.16336 6.58720 6.77786 6.87211 7.03498 7.13850 7.40845 7.52387 7.83176 7.96263 8.28657 8.35141 8.38766 8.62397 9.72564 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.021750 B = 0.010334 C = 0.007159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.040198 B = 2708.943627 C = 3910.059013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.323 6.323 3 C 0.133 3.867 4 C -0.155 4.155 5 C 0.161 3.839 6 C -0.435 4.435 7 H 0.089 0.911 8 C 0.077 3.923 9 N -0.762 5.762 10 Si 0.916 3.084 11 H -0.261 1.261 12 H -0.273 1.273 13 H -0.258 1.258 14 C -0.153 4.153 15 C 0.295 3.705 16 N -0.493 5.493 17 C -0.084 4.084 18 C 0.384 3.616 19 O -0.474 6.474 20 C -0.243 4.243 21 H 0.088 0.912 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.138 0.862 25 H 0.292 0.708 26 H 0.090 0.910 27 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.064 -3.373 -1.395 4.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.237 6.237 3 C 0.088 3.912 4 C -0.175 4.175 5 C 0.155 3.845 6 C -0.463 4.463 7 H 0.107 0.893 8 C -0.146 4.146 9 N -0.384 5.384 10 Si 0.739 3.261 11 H -0.185 1.185 12 H -0.198 1.198 13 H -0.182 1.182 14 C -0.159 4.159 15 C -0.015 4.015 16 N -0.172 5.172 17 C -0.087 4.087 18 C 0.245 3.755 19 O -0.349 6.349 20 C -0.263 4.263 21 H 0.106 0.894 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.156 0.844 25 H 0.104 0.896 26 H 0.106 0.894 27 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.797 -2.247 -1.227 3.791 hybrid contribution 0.498 -0.472 -0.015 0.686 sum -2.299 -2.719 -1.241 3.770 Atomic orbital electron populations 1.22874 0.79970 1.02497 1.01045 1.86025 1.20116 1.28135 1.89435 1.18923 0.92379 0.82877 0.96987 1.20770 0.89485 0.99104 1.08137 1.17043 0.92748 0.88298 0.86410 1.19689 0.90775 1.03262 1.32542 0.89261 1.26093 1.02323 0.93956 0.92274 1.69693 1.39566 1.10380 1.18791 0.86189 0.80327 0.79114 0.80428 1.18484 1.19771 1.18166 1.16023 0.90322 0.86600 1.22956 1.25632 0.92070 0.92141 0.91667 1.81066 1.09361 1.12614 1.14205 1.19946 0.92271 0.94323 1.02202 1.24114 0.88507 0.93468 0.69454 1.90421 1.17700 1.90882 1.35916 1.20700 0.98728 0.90920 1.15956 0.89389 0.93184 0.93225 0.84421 0.89604 0.89360 0.86305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.80 101.05 0.99 1.44 15 2 O -0.32 -6.21 10.48 -19.17 -0.20 -6.41 15 3 C 0.13 2.82 6.67 -39.27 -0.26 2.56 15 4 C -0.15 -3.55 8.60 -38.69 -0.33 -3.88 15 5 C 0.16 3.77 5.58 -106.59 -0.60 3.17 15 6 C -0.44 -10.25 8.47 -37.85 -0.32 -10.57 15 7 H 0.09 2.10 7.29 -52.49 -0.38 1.72 15 8 C 0.08 1.70 5.14 -17.30 -0.09 1.61 15 9 N -0.76 -17.24 10.97 55.56 0.61 -16.63 15 10 Si 0.92 16.77 29.59 -169.99 -5.03 11.74 15 11 H -0.26 -4.85 7.11 56.52 0.40 -4.45 15 12 H -0.27 -4.81 7.11 56.52 0.40 -4.41 15 13 H -0.26 -4.68 7.11 56.52 0.40 -4.28 15 14 C -0.15 -3.37 5.84 -105.57 -0.62 -3.98 15 15 C 0.29 6.46 12.68 -22.47 -0.28 6.17 15 16 N -0.49 -11.02 18.54 41.84 0.78 -10.25 15 17 C -0.08 -1.72 5.89 -104.80 -0.62 -2.34 15 18 C 0.38 7.15 11.01 34.35 0.38 7.52 15 19 O -0.47 -9.54 17.14 5.58 0.10 -9.44 15 20 C -0.24 -4.92 8.57 -38.77 -0.33 -5.25 15 21 H 0.09 0.99 8.14 -51.93 -0.42 0.56 15 22 H 0.05 0.69 7.64 -51.93 -0.40 0.29 15 23 H 0.05 0.67 7.64 -51.94 -0.40 0.27 15 24 H 0.14 3.26 6.19 -52.48 -0.32 2.93 15 25 H 0.29 5.97 8.29 -40.82 -0.34 5.63 15 26 H 0.09 1.49 7.20 -52.49 -0.38 1.11 15 27 H 0.12 2.23 5.79 -52.49 -0.30 1.93 15 LS Contribution 254.47 15.07 3.83 3.83 Total: -1.00 -25.66 254.47 -3.74 -29.40 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -1.74 Total: 1.30 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -2.08 Total: -3.54 kcal Atomic # 7 Polarization: -28.26 SS G_CDS: 1.39 Total: -26.88 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.11 Total: -15.85 kcal Atomic # 14 Polarization: 16.77 SS G_CDS: -5.03 Total: 11.74 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -25.66 -3.74 -29.40 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575645003.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.406 kcal (2) G-P(sol) polarization free energy of solvation -25.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds