Wall clock time and date at job start Mon Mar 30 2020 02:50:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.35818 * 116.99480 * 2 1
4 4 C 1.38170 * 119.67013 * 179.72999 * 3 2 1
5 5 C 1.40677 * 120.17401 * 179.72407 * 4 3 2
6 6 C 1.40849 * 120.23278 * 180.29183 * 5 4 3
7 7 H 1.07995 * 119.99617 * 154.40668 * 6 5 4
8 8 C 1.40233 * 119.99747 * 334.40276 * 6 5 4
9 9 N 1.30659 * 120.00343 * 342.89496 * 8 6 5
10 10 Si 1.86802 * 119.99809 * 162.89678 * 8 6 5
11 11 H 1.48505 * 109.46998 * 60.00109 * 10 8 6
12 12 H 1.48499 * 109.47080 * 180.02562 * 10 8 6
13 13 H 1.48498 * 109.47309 * 300.00130 * 10 8 6
14 14 C 1.41894 * 119.53476 * 0.53760 * 5 4 3
15 15 C 1.43204 * 120.31378 * 179.71117 * 14 5 4
16 16 N 6.72725 * 116.75874 * 0.02562 * 2 1 3
17 17 C 1.40887 * 119.36605 * 359.73731 * 14 5 4
18 18 C 1.47150 * 120.09712 * 180.02562 * 17 14 5
19 19 O 1.21253 * 119.99990 * 179.97438 * 18 17 14
20 20 C 1.39145 * 119.67463 * 359.97438 * 3 2 1
21 21 H 1.09002 * 109.46684 * 180.02562 * 1 2 3
22 22 H 1.08998 * 109.47354 * 300.00169 * 1 2 3
23 23 H 1.08987 * 109.47327 * 60.00813 * 1 2 3
24 24 H 1.08004 * 119.91394 * 359.97438 * 4 3 2
25 25 H 0.96995 * 120.00189 * 179.97438 * 9 8 6
26 26 H 1.07997 * 119.99655 * 359.97240 * 18 17 14
27 27 H 1.08000 * 119.77401 * 359.97438 * 20 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0455 1.2102 0.0000
4 6 3.4257 1.2747 0.0057
5 6 4.0753 2.5225 -0.0001
6 6 5.4821 2.5897 -0.0006
7 1 5.9812 3.4561 -0.4086
8 6 6.2347 1.5315 0.5289
9 7 5.6663 0.6528 1.3112
10 14 8.0500 1.3781 0.1158
11 1 8.7670 2.5942 0.5768
12 1 8.6131 0.1836 0.7950
13 1 8.2130 1.2344 -1.3532
14 6 3.3032 3.7130 -0.0002
15 6 3.9471 4.9921 0.0001
16 7 4.4579 6.0068 0.0027
17 6 1.8971 3.6246 -0.0002
18 6 1.0807 4.8489 -0.0008
19 8 -0.1293 4.7707 -0.0012
20 6 1.2809 2.3728 -0.0005
21 1 -0.3633 -1.0277 0.0005
22 1 -0.3634 0.5138 0.8899
23 1 -0.3633 0.5136 -0.8899
24 1 4.0074 0.3647 0.0105
25 1 6.1868 -0.0793 1.6772
26 1 1.5593 5.8170 -0.0010
27 1 0.2030 2.3058 -0.0014
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000575645003.mol2 27
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:50:24
Heat of formation + Delta-G solvation = -46.954080 kcal
Electronic energy + Delta-G solvation = -15123.277969 eV
Core-core repulsion = 12424.859359 eV
Total energy + Delta-G solvation = -2698.418609 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 231.068 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-40.98953 -39.79276 -38.50353 -36.83634 -35.55670 -32.11224 -31.50872 -28.47520
-27.29413 -25.74596 -23.41391 -22.03816 -19.62388 -19.12487 -18.17495 -17.61862
-16.64635 -16.45776 -16.42146 -15.67382 -15.32785 -14.99749 -14.71457 -14.49760
-14.41055 -13.59199 -13.48620 -13.15374 -12.90424 -12.87260 -12.71834 -12.35691
-12.00090 -11.84227 -11.65223 -11.11225 -10.78603 -9.70853 -9.03822 -8.78612
-6.63045 -0.29279 0.58933 1.38830 1.42846 1.51681 1.69572 1.97165
2.15635 2.27398 2.59661 2.68685 3.28738 3.45409 3.56754 4.20157
4.36978 4.42689 4.49143 4.60663 4.78364 4.90676 5.07925 5.19730
5.38974 5.48998 5.74041 5.79829 6.16493 6.36129 6.60562 6.64080
6.75137 6.89094 8.09969
Molecular weight = 231.07amu
Principal moments of inertia in cm(-1)
A = 0.021750 B = 0.010334 C = 0.007159
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1287.040198 B = 2708.943627 C = 3910.059013
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.022 3.978
2 O -0.338 6.338
3 C 0.141 3.859
4 C -0.179 4.179
5 C 0.144 3.856
6 C -0.465 4.465
7 H 0.081 0.919
8 C 0.045 3.955
9 N -0.787 5.787
10 Si 0.979 3.021
11 H -0.265 1.265
12 H -0.259 1.259
13 H -0.255 1.255
14 C -0.165 4.165
15 C 0.303 3.697
16 N -0.504 5.504
17 C -0.084 4.084
18 C 0.396 3.604
19 O -0.485 6.485
20 C -0.242 4.242
21 H 0.121 0.879
22 H 0.055 0.945
23 H 0.059 0.941
24 H 0.124 0.876
25 H 0.301 0.699
26 H 0.116 0.884
27 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.613 -3.591 -1.502 5.311
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 O -0.252 6.252
3 C 0.095 3.905
4 C -0.200 4.200
5 C 0.139 3.861
6 C -0.492 4.492
7 H 0.099 0.901
8 C -0.176 4.176
9 N -0.410 5.410
10 Si 0.799 3.201
11 H -0.190 1.190
12 H -0.183 1.183
13 H -0.179 1.179
14 C -0.171 4.171
15 C -0.007 4.007
16 N -0.183 5.183
17 C -0.087 4.087
18 C 0.257 3.743
19 O -0.360 6.360
20 C -0.262 4.262
21 H 0.140 0.860
22 H 0.074 0.926
23 H 0.078 0.922
24 H 0.142 0.858
25 H 0.113 0.887
26 H 0.132 0.868
27 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges -3.375 -2.472 -1.331 4.390
hybrid contribution 0.513 -0.454 0.029 0.686
sum -2.861 -2.926 -1.302 4.295
Atomic orbital electron populations
1.23249 0.77169 1.05098 1.01761 1.86012 1.22965 1.27217 1.88958
1.18960 0.92052 0.83957 0.95485 1.20678 0.90437 0.98479 1.10357
1.17277 0.93182 0.89043 0.86600 1.19830 0.91305 1.04018 1.34035
0.90104 1.26781 1.05928 0.93220 0.91644 1.69713 1.41198 1.10879
1.19166 0.85267 0.75434 0.79168 0.80214 1.18959 1.18315 1.17931
1.16076 0.90990 0.86210 1.23803 1.25603 0.91804 0.91973 0.91310
1.81061 1.09507 1.12974 1.14758 1.20210 0.91901 0.95448 1.01155
1.24228 0.88004 0.93504 0.68557 1.90424 1.18183 1.90953 1.36416
1.20920 0.99574 0.90527 1.15144 0.86037 0.92594 0.92247 0.85828
0.88733 0.86805 0.84493
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.56 9.80 113.37 1.11 1.67 15
2 O -0.34 -12.55 10.48 -91.51 -0.96 -13.51 15
3 C 0.14 5.90 6.67 22.47 0.15 6.05 15
4 C -0.18 -8.34 8.60 22.85 0.20 -8.15 15
5 C 0.14 6.88 5.58 -21.14 -0.12 6.76 15
6 C -0.46 -22.31 8.47 23.39 0.20 -22.11 15
7 H 0.08 3.89 7.29 -2.91 -0.02 3.87 15
8 C 0.05 2.02 5.14 85.35 0.44 2.46 15
9 N -0.79 -35.96 10.97 21.87 0.24 -35.72 15
10 Si 0.98 34.20 29.59 68.60 2.03 36.23 15
11 H -0.27 -9.38 7.11 99.48 0.71 -8.67 15
12 H -0.26 -8.39 7.11 99.48 0.71 -7.69 15
13 H -0.26 -8.75 7.11 99.48 0.71 -8.04 15
14 C -0.16 -7.22 5.84 -20.48 -0.12 -7.34 15
15 C 0.30 13.13 12.68 88.33 1.12 14.25 15
16 N -0.50 -22.16 18.54 19.01 0.35 -21.81 15
17 C -0.08 -3.32 5.89 -19.98 -0.12 -3.44 15
18 C 0.40 13.91 11.01 70.16 0.77 14.68 15
19 O -0.48 -18.31 17.14 -2.94 -0.05 -18.36 15
20 C -0.24 -9.44 8.57 22.80 0.20 -9.24 15
21 H 0.12 2.33 8.14 -2.39 -0.02 2.31 15
22 H 0.06 1.39 7.64 -2.39 -0.02 1.38 15
23 H 0.06 1.44 7.64 -2.39 -0.02 1.42 15
24 H 0.12 6.03 6.19 -2.91 -0.02 6.01 15
25 H 0.30 12.29 8.29 -92.71 -0.77 11.52 15
26 H 0.12 3.53 7.20 -2.91 -0.02 3.51 15
27 H 0.14 4.81 5.79 -2.91 -0.02 4.80 15
Total: -1.00 -53.84 254.47 6.66 -47.18
By element:
Atomic # 1 Polarization: 9.19 SS G_CDS: 1.22 Total: 10.41 kcal
Atomic # 6 Polarization: -8.24 SS G_CDS: 3.83 Total: -4.41 kcal
Atomic # 7 Polarization: -58.12 SS G_CDS: 0.59 Total: -57.53 kcal
Atomic # 8 Polarization: -30.86 SS G_CDS: -1.01 Total: -31.87 kcal
Atomic # 14 Polarization: 34.20 SS G_CDS: 2.03 Total: 36.23 kcal
Total: -53.84 6.66 -47.18 kcal
The number of atoms in the molecule is 27
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000575645003.mol2 27
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 0.225 kcal
(2) G-P(sol) polarization free energy of solvation -53.838 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.613 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.659 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.179 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.954 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds