Wall clock time and date at job start Mon Mar 30 2020 02:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35818 * 116.99480 * 2 1 4 4 C 1.38170 * 119.67013 * 179.72999 * 3 2 1 5 5 C 1.40677 * 120.17401 * 179.72407 * 4 3 2 6 6 C 1.40849 * 120.23278 * 180.29183 * 5 4 3 7 7 H 1.07995 * 119.99617 * 154.40668 * 6 5 4 8 8 C 1.40233 * 119.99747 * 334.40276 * 6 5 4 9 9 N 1.30659 * 120.00343 * 342.89496 * 8 6 5 10 10 Si 1.86802 * 119.99809 * 162.89678 * 8 6 5 11 11 H 1.48505 * 109.46998 * 60.00109 * 10 8 6 12 12 H 1.48499 * 109.47080 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47309 * 300.00130 * 10 8 6 14 14 C 1.41894 * 119.53476 * 0.53760 * 5 4 3 15 15 C 1.43204 * 120.31378 * 179.71117 * 14 5 4 16 16 N 6.72725 * 116.75874 * 0.02562 * 2 1 3 17 17 C 1.40887 * 119.36605 * 359.73731 * 14 5 4 18 18 C 1.47150 * 120.09712 * 180.02562 * 17 14 5 19 19 O 1.21253 * 119.99990 * 179.97438 * 18 17 14 20 20 C 1.39145 * 119.67463 * 359.97438 * 3 2 1 21 21 H 1.09002 * 109.46684 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47354 * 300.00169 * 1 2 3 23 23 H 1.08987 * 109.47327 * 60.00813 * 1 2 3 24 24 H 1.08004 * 119.91394 * 359.97438 * 4 3 2 25 25 H 0.96995 * 120.00189 * 179.97438 * 9 8 6 26 26 H 1.07997 * 119.99655 * 359.97240 * 18 17 14 27 27 H 1.08000 * 119.77401 * 359.97438 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2102 0.0000 4 6 3.4257 1.2747 0.0057 5 6 4.0753 2.5225 -0.0001 6 6 5.4821 2.5897 -0.0006 7 1 5.9812 3.4561 -0.4086 8 6 6.2347 1.5315 0.5289 9 7 5.6663 0.6528 1.3112 10 14 8.0500 1.3781 0.1158 11 1 8.7670 2.5942 0.5768 12 1 8.6131 0.1836 0.7950 13 1 8.2130 1.2344 -1.3532 14 6 3.3032 3.7130 -0.0002 15 6 3.9471 4.9921 0.0001 16 7 4.4579 6.0068 0.0027 17 6 1.8971 3.6246 -0.0002 18 6 1.0807 4.8489 -0.0008 19 8 -0.1293 4.7707 -0.0012 20 6 1.2809 2.3728 -0.0005 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5136 -0.8899 24 1 4.0074 0.3647 0.0105 25 1 6.1868 -0.0793 1.6772 26 1 1.5593 5.8170 -0.0010 27 1 0.2030 2.3058 -0.0014 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575645003.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:24 Heat of formation + Delta-G solvation = -46.954080 kcal Electronic energy + Delta-G solvation = -15123.277969 eV Core-core repulsion = 12424.859359 eV Total energy + Delta-G solvation = -2698.418609 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.068 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.98953 -39.79276 -38.50353 -36.83634 -35.55670 -32.11224 -31.50872 -28.47520 -27.29413 -25.74596 -23.41391 -22.03816 -19.62388 -19.12487 -18.17495 -17.61862 -16.64635 -16.45776 -16.42146 -15.67382 -15.32785 -14.99749 -14.71457 -14.49760 -14.41055 -13.59199 -13.48620 -13.15374 -12.90424 -12.87260 -12.71834 -12.35691 -12.00090 -11.84227 -11.65223 -11.11225 -10.78603 -9.70853 -9.03822 -8.78612 -6.63045 -0.29279 0.58933 1.38830 1.42846 1.51681 1.69572 1.97165 2.15635 2.27398 2.59661 2.68685 3.28738 3.45409 3.56754 4.20157 4.36978 4.42689 4.49143 4.60663 4.78364 4.90676 5.07925 5.19730 5.38974 5.48998 5.74041 5.79829 6.16493 6.36129 6.60562 6.64080 6.75137 6.89094 8.09969 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.021750 B = 0.010334 C = 0.007159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.040198 B = 2708.943627 C = 3910.059013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.338 6.338 3 C 0.141 3.859 4 C -0.179 4.179 5 C 0.144 3.856 6 C -0.465 4.465 7 H 0.081 0.919 8 C 0.045 3.955 9 N -0.787 5.787 10 Si 0.979 3.021 11 H -0.265 1.265 12 H -0.259 1.259 13 H -0.255 1.255 14 C -0.165 4.165 15 C 0.303 3.697 16 N -0.504 5.504 17 C -0.084 4.084 18 C 0.396 3.604 19 O -0.485 6.485 20 C -0.242 4.242 21 H 0.121 0.879 22 H 0.055 0.945 23 H 0.059 0.941 24 H 0.124 0.876 25 H 0.301 0.699 26 H 0.116 0.884 27 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.613 -3.591 -1.502 5.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.252 6.252 3 C 0.095 3.905 4 C -0.200 4.200 5 C 0.139 3.861 6 C -0.492 4.492 7 H 0.099 0.901 8 C -0.176 4.176 9 N -0.410 5.410 10 Si 0.799 3.201 11 H -0.190 1.190 12 H -0.183 1.183 13 H -0.179 1.179 14 C -0.171 4.171 15 C -0.007 4.007 16 N -0.183 5.183 17 C -0.087 4.087 18 C 0.257 3.743 19 O -0.360 6.360 20 C -0.262 4.262 21 H 0.140 0.860 22 H 0.074 0.926 23 H 0.078 0.922 24 H 0.142 0.858 25 H 0.113 0.887 26 H 0.132 0.868 27 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.375 -2.472 -1.331 4.390 hybrid contribution 0.513 -0.454 0.029 0.686 sum -2.861 -2.926 -1.302 4.295 Atomic orbital electron populations 1.23249 0.77169 1.05098 1.01761 1.86012 1.22965 1.27217 1.88958 1.18960 0.92052 0.83957 0.95485 1.20678 0.90437 0.98479 1.10357 1.17277 0.93182 0.89043 0.86600 1.19830 0.91305 1.04018 1.34035 0.90104 1.26781 1.05928 0.93220 0.91644 1.69713 1.41198 1.10879 1.19166 0.85267 0.75434 0.79168 0.80214 1.18959 1.18315 1.17931 1.16076 0.90990 0.86210 1.23803 1.25603 0.91804 0.91973 0.91310 1.81061 1.09507 1.12974 1.14758 1.20210 0.91901 0.95448 1.01155 1.24228 0.88004 0.93504 0.68557 1.90424 1.18183 1.90953 1.36416 1.20920 0.99574 0.90527 1.15144 0.86037 0.92594 0.92247 0.85828 0.88733 0.86805 0.84493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 9.80 113.37 1.11 1.67 15 2 O -0.34 -12.55 10.48 -91.51 -0.96 -13.51 15 3 C 0.14 5.90 6.67 22.47 0.15 6.05 15 4 C -0.18 -8.34 8.60 22.85 0.20 -8.15 15 5 C 0.14 6.88 5.58 -21.14 -0.12 6.76 15 6 C -0.46 -22.31 8.47 23.39 0.20 -22.11 15 7 H 0.08 3.89 7.29 -2.91 -0.02 3.87 15 8 C 0.05 2.02 5.14 85.35 0.44 2.46 15 9 N -0.79 -35.96 10.97 21.87 0.24 -35.72 15 10 Si 0.98 34.20 29.59 68.60 2.03 36.23 15 11 H -0.27 -9.38 7.11 99.48 0.71 -8.67 15 12 H -0.26 -8.39 7.11 99.48 0.71 -7.69 15 13 H -0.26 -8.75 7.11 99.48 0.71 -8.04 15 14 C -0.16 -7.22 5.84 -20.48 -0.12 -7.34 15 15 C 0.30 13.13 12.68 88.33 1.12 14.25 15 16 N -0.50 -22.16 18.54 19.01 0.35 -21.81 15 17 C -0.08 -3.32 5.89 -19.98 -0.12 -3.44 15 18 C 0.40 13.91 11.01 70.16 0.77 14.68 15 19 O -0.48 -18.31 17.14 -2.94 -0.05 -18.36 15 20 C -0.24 -9.44 8.57 22.80 0.20 -9.24 15 21 H 0.12 2.33 8.14 -2.39 -0.02 2.31 15 22 H 0.06 1.39 7.64 -2.39 -0.02 1.38 15 23 H 0.06 1.44 7.64 -2.39 -0.02 1.42 15 24 H 0.12 6.03 6.19 -2.91 -0.02 6.01 15 25 H 0.30 12.29 8.29 -92.71 -0.77 11.52 15 26 H 0.12 3.53 7.20 -2.91 -0.02 3.51 15 27 H 0.14 4.81 5.79 -2.91 -0.02 4.80 15 Total: -1.00 -53.84 254.47 6.66 -47.18 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 1.22 Total: 10.41 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 3.83 Total: -4.41 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.59 Total: -57.53 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -1.01 Total: -31.87 kcal Atomic # 14 Polarization: 34.20 SS G_CDS: 2.03 Total: 36.23 kcal Total: -53.84 6.66 -47.18 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575645003.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.225 kcal (2) G-P(sol) polarization free energy of solvation -53.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds