Wall clock time and date at job start Mon Mar 30 2020 02:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35226 * 116.99733 * 2 1 4 4 C 1.40132 * 120.11646 * 90.00271 * 3 2 1 5 5 C 1.43198 * 119.98139 * 359.97438 * 4 3 2 6 6 N 3.52455 * 95.73252 * 78.64155 * 2 1 3 7 7 C 1.39325 * 120.03443 * 179.72162 * 4 3 2 8 8 C 1.40040 * 120.27536 * 0.27695 * 7 4 3 9 9 C 1.47008 * 119.88437 * 179.97438 * 8 7 4 10 10 O 1.21278 * 120.00351 * 179.97438 * 9 8 7 11 11 C 1.39498 * 120.23402 * 359.97438 * 8 7 4 12 12 C 1.40282 * 119.95790 * 359.97438 * 11 8 7 13 13 C 1.41258 * 120.13470 * 179.97438 * 12 11 8 14 14 H 1.07995 * 120.00214 * 154.18318 * 13 12 11 15 15 C 1.39931 * 119.99533 * 334.18764 * 13 12 11 16 16 N 1.30861 * 120.00546 * 343.37322 * 15 13 12 17 17 Si 1.86804 * 119.99392 * 163.37866 * 15 13 12 18 18 H 1.48489 * 109.47442 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.47011 * 120.00048 * 17 15 13 20 20 H 1.48507 * 109.46765 * 239.99643 * 17 15 13 21 21 H 1.09001 * 109.47068 * 299.99448 * 1 2 3 22 22 H 1.08996 * 109.47140 * 59.99883 * 1 2 3 23 23 H 1.09000 * 109.47049 * 180.02562 * 1 2 3 24 24 H 1.08002 * 119.86158 * 180.25310 * 7 4 3 25 25 H 1.08006 * 120.00096 * 0.02562 * 9 8 7 26 26 H 1.08002 * 120.02403 * 179.97438 * 11 8 7 27 27 H 0.97000 * 120.00166 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0429 1.2049 0.0000 4 6 2.3621 1.8314 1.2122 5 6 2.0376 1.1955 2.4535 6 7 1.7811 0.6907 3.4382 7 6 2.9998 3.0701 1.2102 8 6 3.3195 3.6977 -0.0002 9 6 3.9919 5.0050 0.0077 10 8 4.2702 5.5502 -1.0393 11 6 3.0023 3.0867 -1.2135 12 6 2.3612 1.8390 -1.2229 13 6 2.0377 1.2171 -2.4493 14 1 1.9433 0.1426 -2.5016 15 6 1.8396 1.9935 -3.5965 16 7 1.6299 3.2806 -3.4874 17 14 1.8745 1.1925 -5.2838 18 1 2.1282 -0.2630 -5.1356 19 1 0.5681 1.4016 -5.9580 20 1 2.9555 1.8026 -6.0990 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 3.2482 3.5486 2.1460 25 1 4.2388 5.4796 0.9459 26 1 3.2500 3.5739 -2.1450 27 1 1.4930 3.8188 -4.2827 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575646962.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:07 Heat of formation + Delta-G solvation = -44.000905 kcal Electronic energy + Delta-G solvation = -15252.921516 eV Core-core repulsion = 12554.630966 eV Total energy + Delta-G solvation = -2698.290550 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.068 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.77759 -39.63863 -37.73847 -37.32660 -35.62355 -32.02416 -31.55738 -28.14907 -27.28590 -24.81600 -24.20182 -22.00277 -19.91863 -18.39402 -17.91447 -17.49338 -17.07475 -16.30380 -16.18695 -15.65541 -15.06054 -14.82187 -14.64342 -14.51640 -14.27167 -14.02897 -13.56025 -13.32481 -12.92290 -12.83452 -12.39104 -12.24781 -12.19113 -11.86686 -11.14147 -10.67191 -10.53053 -9.59461 -9.42522 -8.74552 -6.42652 -0.11619 0.36491 1.27394 1.41457 1.55350 1.69936 1.72317 2.18625 2.27087 2.72394 3.04290 3.06693 3.58479 3.70856 4.36569 4.45930 4.59790 4.69977 4.75669 4.79711 4.91936 5.02629 5.19485 5.42655 5.67535 5.76963 5.98023 6.29572 6.53658 6.60779 6.73719 6.78623 6.99442 8.21169 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.019655 B = 0.011575 C = 0.007574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.220754 B = 2418.419885 C = 3695.892638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.343 6.343 3 C 0.028 3.972 4 C -0.047 4.047 5 C 0.294 3.706 6 N -0.470 5.470 7 C -0.106 4.106 8 C -0.191 4.191 9 C 0.396 3.604 10 O -0.512 6.512 11 C -0.080 4.080 12 C 0.054 3.946 13 C -0.467 4.467 14 H 0.082 0.918 15 C 0.038 3.962 16 N -0.814 5.814 17 Si 0.979 3.021 18 H -0.257 1.257 19 H -0.265 1.265 20 H -0.266 1.266 21 H 0.034 0.966 22 H 0.040 0.960 23 H 0.106 0.894 24 H 0.162 0.838 25 H 0.159 0.841 26 H 0.117 0.883 27 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.266 0.866 2.220 2.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.259 6.259 3 C -0.020 4.020 4 C -0.051 4.051 5 C -0.020 4.020 6 N -0.147 5.147 7 C -0.128 4.128 8 C -0.193 4.193 9 C 0.258 3.742 10 O -0.389 6.389 11 C -0.100 4.100 12 C 0.051 3.949 13 C -0.495 4.495 14 H 0.101 0.899 15 C -0.179 4.179 16 N -0.439 5.439 17 Si 0.800 3.200 18 H -0.181 1.181 19 H -0.190 1.190 20 H -0.191 1.191 21 H 0.052 0.948 22 H 0.059 0.941 23 H 0.125 0.875 24 H 0.180 0.820 25 H 0.174 0.826 26 H 0.135 0.865 27 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.024 0.407 3.058 3.085 hybrid contribution -0.343 -0.091 -1.268 1.316 sum -0.318 0.316 1.791 1.846 Atomic orbital electron populations 1.22973 0.79578 1.03290 0.99803 1.85763 1.20164 1.25820 1.94185 1.18914 1.02929 0.89307 0.90807 1.16144 1.07776 0.96204 0.85014 1.25763 0.92038 0.91968 0.92222 1.81093 1.11130 1.10009 1.12484 1.20822 1.01548 0.92563 0.97836 1.20842 1.05608 0.99362 0.93441 1.24657 0.71956 0.83554 0.94027 1.90489 1.44696 1.64131 1.39572 1.21856 0.94928 0.95707 0.97545 1.17963 0.92240 0.92265 0.92456 1.19693 1.41735 0.95448 0.92665 0.89942 1.26720 0.91250 0.94956 1.04975 1.69799 1.32537 1.07730 1.33808 0.85177 0.79010 0.79680 0.76146 1.18092 1.18952 1.19101 0.94775 0.94097 0.87535 0.82013 0.82562 0.86541 0.89621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.35 11.12 113.37 1.26 2.61 15 2 O -0.34 -14.80 9.10 -85.08 -0.77 -15.57 15 3 C 0.03 1.26 5.76 23.50 0.14 1.40 15 4 C -0.05 -1.82 5.74 -21.31 -0.12 -1.95 15 5 C 0.29 11.02 14.84 88.33 1.31 12.34 15 6 N -0.47 -18.16 18.54 19.00 0.35 -17.81 15 7 C -0.11 -3.50 9.47 22.97 0.22 -3.28 15 8 C -0.19 -7.15 5.86 -20.24 -0.12 -7.27 15 9 C 0.40 12.42 11.43 70.12 0.80 13.22 15 10 O -0.51 -20.76 17.13 -3.02 -0.05 -20.82 15 11 C -0.08 -3.72 8.21 23.07 0.19 -3.53 15 12 C 0.05 2.59 5.57 -21.27 -0.12 2.48 15 13 C -0.47 -22.94 8.70 23.42 0.20 -22.73 15 14 H 0.08 4.05 7.65 -2.91 -0.02 4.03 15 15 C 0.04 1.75 5.15 85.25 0.44 2.19 15 16 N -0.81 -39.47 10.96 21.83 0.24 -39.23 15 17 Si 0.98 35.91 29.59 68.60 2.03 37.94 15 18 H -0.26 -9.34 7.11 99.48 0.71 -8.63 15 19 H -0.26 -9.30 7.11 99.48 0.71 -8.60 15 20 H -0.27 -9.57 7.11 99.48 0.71 -8.86 15 21 H 0.03 1.16 8.14 -2.39 -0.02 1.14 15 22 H 0.04 1.53 8.14 -2.39 -0.02 1.52 15 23 H 0.11 3.12 8.14 -2.39 -0.02 3.10 15 24 H 0.16 3.82 8.06 -2.91 -0.02 3.80 15 25 H 0.16 2.90 8.06 -2.91 -0.02 2.88 15 26 H 0.12 5.99 5.74 -2.91 -0.02 5.97 15 27 H 0.29 12.99 8.30 -92.71 -0.77 12.22 15 Total: -1.00 -58.65 260.71 7.20 -51.45 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: 1.21 Total: 8.57 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: 4.20 Total: -4.53 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: 0.59 Total: -57.04 kcal Atomic # 8 Polarization: -35.56 SS G_CDS: -0.83 Total: -36.39 kcal Atomic # 14 Polarization: 35.91 SS G_CDS: 2.03 Total: 37.94 kcal Total: -58.65 7.20 -51.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575646962.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.449 kcal (2) G-P(sol) polarization free energy of solvation -58.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds