Wall clock time and date at job start Mon Mar 30 2020 02:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35698 * 117.00004 * 2 1 4 4 C 1.38789 * 119.02861 * 0.02562 * 3 2 1 5 5 C 1.39050 * 120.94407 * 179.70114 * 4 3 2 6 6 C 1.43203 * 120.48170 * 180.26647 * 5 4 3 7 7 N 5.82782 * 79.89962 * 0.17843 * 2 1 3 8 8 C 1.46658 * 119.03153 * 0.55028 * 5 4 3 9 9 C 1.39993 * 120.88025 * 179.74213 * 8 5 4 10 10 H 1.08001 * 119.99602 * 225.52695 * 9 8 5 11 11 C 1.40596 * 119.99881 * 45.52085 * 9 8 5 12 12 N 1.30476 * 119.99658 * 203.58608 * 11 9 8 13 13 Si 1.86796 * 119.99973 * 23.31242 * 11 9 8 14 14 H 1.48505 * 109.46878 * 266.08546 * 13 11 9 15 15 H 1.48496 * 109.47263 * 26.08400 * 13 11 9 16 16 H 1.48494 * 109.47349 * 146.09058 * 13 11 9 17 17 C 1.46784 * 118.24078 * 359.46815 * 8 5 4 18 18 C 1.46664 * 120.52018 * 180.23034 * 17 8 5 19 19 O 1.21338 * 119.99415 * 5.23820 * 18 17 8 20 20 C 1.38794 * 119.02396 * 180.02562 * 3 2 1 21 21 H 1.09004 * 109.47065 * 299.99609 * 1 2 3 22 22 H 1.09002 * 109.47443 * 59.99952 * 1 2 3 23 23 H 1.09000 * 109.47528 * 179.97438 * 1 2 3 24 24 H 1.08006 * 119.52753 * 359.97438 * 4 3 2 25 25 H 0.97001 * 119.99739 * 179.73277 * 12 11 9 26 26 H 1.07992 * 120.00493 * 185.24355 * 18 17 8 27 27 H 1.08004 * 119.56510 * 0.02562 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 6 1.2695 2.3601 0.0005 5 6 1.8590 3.6194 0.0068 6 6 1.0492 4.8005 0.0130 7 7 0.4069 5.7375 0.0179 8 6 3.3221 3.7204 0.0005 9 6 3.9562 4.9685 0.0011 10 1 4.7819 5.1549 -0.6696 11 6 3.5178 5.9793 0.8745 12 7 3.7534 7.2315 0.5937 13 14 2.5915 5.5298 2.4331 14 1 1.1304 5.5807 2.1726 15 1 2.9713 4.1582 2.8566 16 1 2.9362 6.4934 3.5091 17 6 4.1040 2.4782 -0.0001 18 6 5.5701 2.5209 -0.0012 19 8 6.1460 3.5847 0.0944 20 6 3.4321 1.2581 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 0.1927 2.2764 0.0005 25 1 3.4476 7.9291 1.1944 26 1 6.1369 1.6058 -0.0871 27 1 3.9978 0.3381 -0.0014 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575650065.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:04 Heat of formation + Delta-G solvation = -11.613949 kcal Electronic energy + Delta-G solvation = -15432.236067 eV Core-core repulsion = 12735.349920 eV Total energy + Delta-G solvation = -2696.886146 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.17561 -37.89036 -36.53787 -34.91357 -33.76964 -30.80083 -30.11387 -27.43102 -25.33411 -23.44349 -22.37169 -19.89680 -18.21377 -17.68291 -16.07941 -15.85298 -15.43467 -15.12533 -14.30624 -14.24310 -13.48433 -13.44686 -13.28995 -12.98819 -12.66380 -12.21259 -11.96056 -11.76053 -11.50767 -11.35598 -10.90777 -10.61150 -10.39363 -10.25948 -9.82402 -9.31644 -8.65420 -8.15573 -7.37222 -7.22463 -4.75049 1.40824 2.14722 2.96862 3.02990 3.13180 3.23589 3.67853 3.77855 3.97576 4.10771 4.29743 4.96659 5.00977 5.23372 5.44280 5.48287 5.54715 5.72304 5.88062 6.11799 6.40271 6.50362 6.68628 6.87162 7.02383 7.29782 7.38076 8.00434 8.06251 8.27968 8.37668 8.56747 8.60580 9.66797 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.022817 B = 0.012739 C = 0.009243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.835238 B = 2197.390724 C = 3028.428700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.329 6.329 3 C -0.028 4.028 4 C -0.072 4.072 5 C -0.144 4.144 6 C 0.281 3.719 7 N -0.469 5.469 8 C 0.123 3.877 9 C -0.377 4.377 10 H 0.119 0.881 11 C 0.087 3.913 12 N -0.753 5.753 13 Si 0.878 3.122 14 H -0.244 1.244 15 H -0.240 1.240 16 H -0.275 1.275 17 C -0.263 4.263 18 C 0.373 3.627 19 O -0.463 6.463 20 C -0.019 4.019 21 H 0.045 0.955 22 H 0.046 0.954 23 H 0.087 0.913 24 H 0.113 0.887 25 H 0.294 0.706 26 H 0.077 0.923 27 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.729 -10.594 1.073 10.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.244 6.244 3 C -0.071 4.071 4 C -0.094 4.094 5 C -0.150 4.150 6 C -0.030 4.030 7 N -0.147 5.147 8 C 0.117 3.883 9 C -0.402 4.402 10 H 0.136 0.864 11 C -0.139 4.139 12 N -0.373 5.373 13 Si 0.700 3.300 14 H -0.167 1.167 15 H -0.163 1.163 16 H -0.200 1.200 17 C -0.265 4.265 18 C 0.235 3.765 19 O -0.339 6.339 20 C -0.038 4.038 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.105 0.895 24 H 0.131 0.869 25 H 0.105 0.895 26 H 0.093 0.907 27 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.298 -8.446 1.147 9.139 hybrid contribution -0.534 -0.298 0.643 0.887 sum -3.833 -8.744 1.791 9.713 Atomic orbital electron populations 1.22805 0.80426 1.02428 1.00592 1.85888 1.19554 1.27484 1.91504 1.17955 0.91603 0.83048 1.14524 1.20829 0.98277 0.91206 0.99066 1.16827 0.91323 0.86286 1.20558 1.25335 0.92296 0.92818 0.92516 1.81058 1.11033 1.09937 1.12702 1.19372 0.87645 0.92278 0.89011 1.19683 1.13391 0.92008 1.15145 0.86371 1.26408 0.93042 0.93915 1.00581 1.69530 1.31556 1.01216 1.35019 0.86858 0.81739 0.81342 0.80065 1.16746 1.16316 1.20048 1.21358 0.95235 0.91711 1.18233 1.23242 0.88334 0.91928 0.72954 1.90535 1.72757 1.34507 1.36129 1.20291 0.90855 0.96959 0.95744 0.93649 0.93570 0.89458 0.86916 0.89456 0.90704 0.86308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.78 101.05 0.99 1.40 15 2 O -0.33 -5.33 10.46 -18.80 -0.20 -5.53 15 3 C -0.03 -0.51 6.67 -39.17 -0.26 -0.77 15 4 C -0.07 -1.38 8.66 -39.08 -0.34 -1.72 15 5 C -0.14 -3.22 4.83 -104.27 -0.50 -3.72 15 6 C 0.28 6.64 10.48 -22.47 -0.24 6.41 15 7 N -0.47 -11.52 17.33 41.84 0.73 -10.80 15 8 C 0.12 2.90 4.86 -102.39 -0.50 2.40 15 9 C -0.38 -9.77 7.55 -38.04 -0.29 -10.06 15 10 H 0.12 3.30 6.94 -52.49 -0.36 2.93 15 11 C 0.09 2.25 4.59 -17.24 -0.08 2.17 15 12 N -0.75 -19.72 13.91 55.58 0.77 -18.95 15 13 Si 0.88 20.29 24.75 -169.99 -4.21 16.08 15 14 H -0.24 -5.70 5.27 56.52 0.30 -5.40 15 15 H -0.24 -5.49 7.11 56.52 0.40 -5.09 15 16 H -0.27 -6.10 7.11 56.52 0.40 -5.69 15 17 C -0.26 -5.36 6.06 -102.65 -0.62 -5.98 15 18 C 0.37 7.09 11.43 34.13 0.39 7.48 15 19 O -0.46 -10.73 14.92 5.51 0.08 -10.65 15 20 C -0.02 -0.34 9.65 -38.98 -0.38 -0.71 15 21 H 0.04 0.54 7.60 -51.93 -0.39 0.14 15 22 H 0.05 0.54 7.60 -51.93 -0.39 0.15 15 23 H 0.09 0.82 8.14 -51.93 -0.42 0.40 15 24 H 0.11 1.88 6.10 -52.48 -0.32 1.56 15 25 H 0.29 7.07 8.29 -40.82 -0.34 6.73 15 26 H 0.08 1.06 8.06 -52.49 -0.42 0.64 15 27 H 0.12 1.72 8.06 -52.48 -0.42 1.30 15 LS Contribution 246.18 15.07 3.71 3.71 Total: -1.00 -28.66 246.18 -2.92 -31.57 By element: Atomic # 1 Polarization: -0.35 SS G_CDS: -1.98 Total: -2.33 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -1.82 Total: -3.11 kcal Atomic # 7 Polarization: -31.24 SS G_CDS: 1.50 Total: -29.75 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.11 Total: -16.18 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.21 Total: 16.08 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -28.66 -2.92 -31.57 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575650065.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.960 kcal (2) G-P(sol) polarization free energy of solvation -28.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds