Wall clock time and date at job start Mon Mar 30 2020 03:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47054 * 272.83051 * 3 2 1 5 5 C 1.36784 * 120.00153 * 262.64228 * 4 3 2 6 6 H 1.07999 * 120.00117 * 209.85755 * 5 4 3 7 7 C 1.39109 * 119.99922 * 29.86138 * 5 4 3 8 8 N 1.31326 * 120.00005 * 28.03035 * 7 5 4 9 9 Si 1.86797 * 119.99880 * 208.03632 * 7 5 4 10 10 H 1.48500 * 109.47374 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47361 * 119.99758 * 9 7 5 12 12 H 1.48502 * 109.47270 * 239.99664 * 9 7 5 13 13 C 1.34775 * 119.99511 * 82.64649 * 4 3 2 14 14 O 1.21566 * 119.99637 * 182.37893 * 13 4 3 15 15 C 1.47991 * 120.00242 * 2.38325 * 13 4 3 16 16 C 1.39824 * 120.18812 * 172.77297 * 15 13 4 17 17 C 1.38777 * 117.88888 * 180.23755 * 16 15 13 18 18 C 1.38611 * 118.07652 * 359.47298 * 17 16 15 19 19 N 1.32161 * 120.08893 * 0.25497 * 18 17 16 20 20 N 1.28354 * 122.30781 * 0.02562 * 19 18 17 21 21 H 4.40644 * 5.51456 * 179.97438 * 4 1 2 22 22 H 1.08999 * 109.46910 * 152.83576 * 3 2 1 23 23 H 1.08999 * 109.47164 * 32.83351 * 3 2 1 24 24 H 0.96998 * 119.99630 * 180.02562 * 8 7 5 25 25 H 1.07998 * 121.05406 * 0.02562 * 16 15 13 26 26 H 1.07997 * 120.95874 * 179.75071 * 17 16 15 27 27 H 1.08003 * 119.95598 * 180.27924 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.0673 1.3796 5 6 3.5049 1.0769 2.0312 6 1 4.2719 1.0416 2.7906 7 6 2.8936 2.2860 1.7156 8 7 1.6638 2.2995 1.2552 9 14 3.8221 3.8902 1.9467 10 1 5.1802 3.6045 2.4752 11 1 3.9355 4.5891 0.6413 12 1 3.0888 4.7527 2.9078 13 6 3.2186 -1.2574 2.0066 14 8 3.5827 -1.3094 3.1653 15 6 2.8681 -2.5007 1.2846 16 6 3.0964 -3.7463 1.8776 17 6 2.7544 -4.8812 1.1559 18 6 2.1979 -4.7113 -0.1022 19 7 2.0111 -3.4954 -0.5853 20 7 2.3290 -2.4397 0.0719 21 1 -1.0500 0.0002 0.0000 22 1 3.0089 0.9151 -0.4692 23 1 3.0097 -0.8627 -0.5572 24 1 1.2377 3.1426 1.0348 25 1 3.5283 -3.8227 2.8644 26 1 2.9130 -5.8682 1.5646 27 1 1.9163 -5.5736 -0.6883 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701791949.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:18 Heat of formation + Delta-G solvation = 109.780511 kcal Electronic energy + Delta-G solvation = -15615.926378 eV Core-core repulsion = 12956.597042 eV Total energy + Delta-G solvation = -2659.329336 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.075 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.61188 -38.26714 -35.25268 -32.85588 -32.47461 -31.62470 -31.14476 -26.44210 -25.72125 -24.11797 -23.75926 -20.13456 -17.80884 -17.48171 -16.77106 -16.40072 -16.04940 -15.04106 -14.69378 -14.23536 -13.84426 -13.60517 -12.99680 -12.91524 -12.33795 -12.22816 -11.78189 -11.13944 -10.74199 -10.48580 -10.44288 -9.96116 -9.55030 -9.27266 -9.20504 -9.18977 -8.76287 -8.46034 -7.88811 -6.51093 -4.00230 0.97906 1.14908 3.06792 3.19622 3.26066 3.49023 3.85402 4.11598 4.23761 4.38060 4.41588 4.71640 4.86262 4.94235 5.01462 5.27877 5.40321 5.65586 5.75134 6.08152 6.27518 6.43483 6.58914 6.81750 7.16759 7.39180 7.97429 8.27315 8.94655 9.04647 9.06560 9.16636 9.79592 10.45690 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.038230 B = 0.009001 C = 0.007754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.228159 B = 3109.991881 C = 3610.266957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.097 4.097 3 C 0.219 3.781 4 N -0.393 5.393 5 C -0.321 4.321 6 H 0.107 0.893 7 C 0.044 3.956 8 N -0.815 5.815 9 Si 0.918 3.082 10 H -0.263 1.263 11 H -0.276 1.276 12 H -0.280 1.280 13 C 0.475 3.525 14 O -0.582 6.582 15 C 0.053 3.947 16 C -0.081 4.081 17 C -0.130 4.130 18 C 0.024 3.976 19 N -0.250 5.250 20 N -0.217 5.217 21 H 0.195 0.805 22 H 0.085 0.915 23 H 0.106 0.894 24 H 0.274 0.726 25 H 0.154 0.846 26 H 0.146 0.854 27 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.050 -8.532 -3.830 9.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.098 4.098 3 C 0.096 3.904 4 N -0.107 5.107 5 C -0.449 4.449 6 H 0.124 0.876 7 C -0.167 4.167 8 N -0.448 5.448 9 Si 0.743 3.257 10 H -0.187 1.187 11 H -0.202 1.202 12 H -0.205 1.205 13 C 0.263 3.737 14 O -0.467 6.467 15 C -0.092 4.092 16 C -0.111 4.111 17 C -0.159 4.159 18 C -0.140 4.140 19 N -0.092 5.092 20 N -0.064 5.064 21 H 0.212 0.788 22 H 0.103 0.897 23 H 0.123 0.877 24 H 0.084 0.916 25 H 0.172 0.828 26 H 0.164 0.836 27 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 0.570 -7.425 -4.571 8.738 hybrid contribution 0.333 -0.139 1.261 1.312 sum 0.903 -7.564 -3.310 8.306 Atomic orbital electron populations 1.24067 0.95184 1.06414 1.02147 1.22642 0.93823 0.95179 0.98171 1.18769 0.85279 1.02192 0.84176 1.43660 1.51082 1.05429 1.10518 1.19712 1.19485 0.83197 1.22542 0.87571 1.25542 0.94382 1.00217 0.96601 1.70187 1.09055 1.28184 1.37360 0.86028 0.80430 0.81004 0.78269 1.18731 1.20198 1.20535 1.17404 0.87767 0.82470 0.86030 1.90621 1.54361 1.85606 1.16110 1.23436 0.96166 0.96453 0.93101 1.22362 0.95826 0.91568 1.01314 1.22289 0.98156 0.99976 0.95444 1.24221 0.97038 0.97920 0.94843 1.73101 1.11653 0.96115 1.28314 1.73816 1.07345 1.20099 1.05130 0.78790 0.89745 0.87701 0.91593 0.82782 0.83598 0.81775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.91 19.19 29.55 0.57 -5.35 15 2 C -0.10 -2.34 9.79 -37.12 -0.36 -2.70 15 3 C 0.22 5.17 4.79 -6.83 -0.03 5.13 15 4 N -0.39 -10.27 2.56 -118.97 -0.30 -10.57 15 5 C -0.32 -8.76 8.97 -15.02 -0.13 -8.89 15 6 H 0.11 2.98 7.69 -52.49 -0.40 2.57 15 7 C 0.04 1.12 4.62 -17.44 -0.08 1.04 15 8 N -0.82 -21.53 10.54 55.50 0.58 -20.94 15 9 Si 0.92 19.59 29.64 -169.99 -5.04 14.55 15 10 H -0.26 -5.58 7.11 56.52 0.40 -5.18 15 11 H -0.28 -5.75 7.11 56.52 0.40 -5.35 15 12 H -0.28 -6.00 7.11 56.52 0.40 -5.60 15 13 C 0.47 12.18 7.53 -12.26 -0.09 12.09 15 14 O -0.58 -16.29 16.20 5.31 0.09 -16.20 15 15 C 0.05 1.14 6.67 -82.84 -0.55 0.58 15 16 C -0.08 -1.38 9.73 -38.79 -0.38 -1.75 15 17 C -0.13 -1.69 10.20 -39.24 -0.40 -2.09 15 18 C 0.02 0.34 11.31 -17.27 -0.20 0.14 15 19 N -0.25 -4.53 11.51 30.59 0.35 -4.18 15 20 N -0.22 -4.51 6.17 33.32 0.21 -4.31 15 21 H 0.19 3.72 7.80 -54.09 -0.42 3.29 15 22 H 0.08 1.98 7.35 -51.93 -0.38 1.60 15 23 H 0.11 2.31 5.36 -51.93 -0.28 2.03 15 24 H 0.27 6.77 8.31 -40.82 -0.34 6.43 15 25 H 0.15 2.48 7.74 -52.49 -0.41 2.07 15 26 H 0.15 1.26 8.06 -52.49 -0.42 0.83 15 27 H 0.17 1.54 8.06 -52.48 -0.42 1.12 15 LS Contribution 251.09 15.07 3.78 3.78 Total: -1.00 -31.97 251.09 -3.86 -35.84 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -1.87 Total: 3.82 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -1.66 Total: -1.80 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 0.84 Total: -39.99 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: 0.09 Total: -16.20 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.04 Total: 14.55 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -31.97 -3.86 -35.84 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701791949.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.616 kcal (2) G-P(sol) polarization free energy of solvation -31.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds