Wall clock time and date at job start Mon Mar 30 2020 03:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47388 * 2 1 4 4 N 1.46899 * 109.47216 * 120.00126 * 2 1 3 5 5 C 1.50699 * 109.46996 * 240.00153 * 2 1 3 6 6 N 1.30093 * 124.98305 * 284.95733 * 5 2 1 7 7 C 1.35892 * 109.73903 * 180.02562 * 6 5 2 8 8 C 1.39675 * 133.50276 * 180.02562 * 7 6 5 9 9 C 1.37715 * 119.77833 * 180.27485 * 8 7 6 10 10 C 1.38723 * 120.51306 * 359.40241 * 9 8 7 11 11 C 1.37954 * 120.44197 * 0.61095 * 10 9 8 12 12 C 1.38714 * 119.83047 * 359.69781 * 11 10 9 13 13 N 1.36538 * 124.98327 * 105.00246 * 5 2 1 14 14 C 1.37313 * 126.39760 * 359.97438 * 13 5 2 15 15 H 1.08004 * 119.99743 * 326.49294 * 14 13 5 16 16 C 1.38906 * 120.00142 * 146.49226 * 14 13 5 17 17 N 1.31378 * 120.00008 * 339.40629 * 16 14 13 18 18 Si 1.86803 * 120.00202 * 159.41211 * 16 14 13 19 19 H 1.48498 * 109.47411 * 59.99420 * 18 16 14 20 20 H 1.48493 * 109.47193 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46863 * 299.99748 * 18 16 14 22 22 H 1.08997 * 109.46911 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46996 * 299.99978 * 1 2 3 24 24 H 1.09002 * 109.47034 * 59.99868 * 1 2 3 25 25 H 1.00894 * 110.99873 * 296.04513 * 4 2 1 26 26 H 1.00901 * 110.99721 * 59.99776 * 4 2 1 27 27 H 1.08005 * 120.11035 * 359.97438 * 8 7 6 28 28 H 1.08000 * 119.73806 * 179.69705 * 9 8 7 29 29 H 1.08004 * 119.77570 * 180.30652 * 10 9 8 30 30 H 1.07998 * 120.08929 * 179.66098 * 11 10 9 31 31 H 0.97001 * 120.00355 * 180.48441 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0323 -0.7104 -1.2305 6 7 2.0216 -1.9996 -1.4040 7 6 2.5461 -2.3034 -2.6203 8 6 2.7675 -3.5037 -3.2993 9 6 3.3373 -3.4853 -4.5529 10 6 3.6821 -2.2827 -5.1524 11 6 3.4703 -1.0883 -4.4954 12 6 2.9031 -1.0882 -3.2295 13 7 2.5663 -0.0953 -2.3263 14 6 2.7373 1.2560 -2.4998 15 1 2.0270 1.9493 -2.0738 16 6 3.8238 1.7315 -3.2230 17 7 4.8822 0.9721 -3.3938 18 14 3.7800 3.4506 -3.9525 19 1 3.6103 4.4462 -2.8639 20 1 5.0520 3.7158 -4.6713 21 1 2.6430 3.5566 -4.9019 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.7503 -0.1990 2.0372 26 1 1.6962 -1.6480 1.2227 27 1 2.4973 -4.4435 -2.8407 28 1 3.5128 -4.4142 -5.0753 29 1 4.1237 -2.2819 -6.1380 30 1 3.7458 -0.1557 -4.9652 31 1 5.6437 1.3067 -3.8929 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019734268.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:24 Heat of formation + Delta-G solvation = 63.374597 kcal Electronic energy + Delta-G solvation = -16064.245616 eV Core-core repulsion = 13538.737063 eV Total energy + Delta-G solvation = -2525.508553 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.75501 -36.47907 -34.90946 -34.00037 -31.19175 -29.14982 -28.51536 -27.55722 -25.20336 -23.29227 -21.10764 -20.61977 -19.05004 -17.65843 -16.58455 -15.36984 -15.20482 -14.64886 -14.43681 -13.92775 -13.44293 -13.00148 -12.85903 -12.72628 -12.60611 -11.97579 -11.51261 -11.39279 -11.32706 -10.90206 -10.78027 -10.69290 -10.33585 -10.28641 -9.49316 -8.86394 -8.63859 -8.26258 -7.20292 -6.89140 -6.66441 -4.50041 2.16326 2.76369 2.99410 3.01915 3.04483 3.76948 4.00761 4.50188 4.68343 5.12942 5.14990 5.35323 5.63030 5.65861 5.83033 5.99197 6.01860 6.22143 6.26147 6.45603 6.65129 6.77276 6.82905 6.96999 7.09351 7.25390 7.54977 7.57737 7.66674 7.89726 7.93863 8.09711 8.20126 8.64311 9.24555 9.42410 10.21674 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.017163 B = 0.014486 C = 0.008514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.004718 B = 1932.460358 C = 3287.746839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.183 3.817 3 H 0.095 0.905 4 N -0.833 5.833 5 C 0.224 3.776 6 N -0.523 5.523 7 C 0.028 3.972 8 C -0.089 4.089 9 C -0.146 4.146 10 C -0.159 4.159 11 C -0.044 4.044 12 C 0.046 3.954 13 N -0.283 5.283 14 C -0.363 4.363 15 H 0.107 0.893 16 C 0.056 3.944 17 N -0.817 5.817 18 Si 0.926 3.074 19 H -0.266 1.266 20 H -0.277 1.277 21 H -0.265 1.265 22 H 0.060 0.940 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.336 0.664 26 H 0.348 0.652 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.115 0.885 31 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.293 0.191 1.041 4.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.070 3.930 3 H 0.113 0.887 4 N -0.363 5.363 5 C -0.038 4.038 6 N -0.246 5.246 7 C -0.096 4.096 8 C -0.109 4.109 9 C -0.167 4.167 10 C -0.180 4.180 11 C -0.064 4.064 12 C -0.069 4.069 13 N 0.047 4.953 14 C -0.491 4.491 15 H 0.125 0.875 16 C -0.158 4.158 17 N -0.445 5.445 18 Si 0.750 3.250 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.190 1.190 22 H 0.079 0.921 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.148 0.852 26 H 0.162 0.838 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.132 0.868 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.614 -0.049 1.260 3.827 hybrid contribution -0.395 1.358 -0.724 1.589 sum -4.009 1.309 0.536 4.251 Atomic orbital electron populations 1.22563 0.97031 1.02395 1.01711 1.19435 0.91338 0.96868 0.85381 0.88695 1.58620 1.67799 1.06903 1.02971 1.22789 1.03128 0.88199 0.89693 1.70014 1.25905 1.11724 1.16937 1.18879 1.04556 0.93142 0.93047 1.19856 1.01854 0.94766 0.94432 1.20479 1.03536 0.96993 0.95646 1.20559 1.05447 0.92182 0.99776 1.20032 0.96532 0.97654 0.92164 1.18666 1.06066 0.88541 0.93672 1.41077 1.39232 1.05595 1.09419 1.19557 1.11105 0.79648 1.38796 0.87505 1.25547 0.93465 1.00560 0.96189 1.70063 1.02988 1.38180 1.33316 0.86008 0.78427 0.80807 0.79726 1.19058 1.20176 1.19020 0.92078 0.92678 0.92131 0.85190 0.83807 0.87489 0.87499 0.87542 0.86755 0.90791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.83 9.46 37.16 0.35 -2.47 16 2 C 0.18 3.55 3.70 -68.86 -0.25 3.29 16 3 H 0.10 1.88 7.27 -51.93 -0.38 1.50 16 4 N -0.83 -14.44 9.21 -5.65 -0.05 -14.49 16 5 C 0.22 5.48 6.68 -154.37 -1.03 4.45 16 6 N -0.52 -13.18 11.05 -8.11 -0.09 -13.27 16 7 C 0.03 0.71 7.23 -84.66 -0.61 0.10 16 8 C -0.09 -1.99 10.10 -39.24 -0.40 -2.39 16 9 C -0.15 -2.96 10.02 -39.59 -0.40 -3.35 16 10 C -0.16 -3.39 10.03 -39.51 -0.40 -3.79 16 11 C -0.04 -1.08 8.57 -39.51 -0.34 -1.42 16 12 C 0.05 1.24 6.16 -83.86 -0.52 0.72 16 13 N -0.28 -7.51 2.86 -56.64 -0.16 -7.67 16 14 C -0.36 -9.30 9.21 -14.85 -0.14 -9.44 16 15 H 0.11 2.53 7.65 -52.48 -0.40 2.13 16 16 C 0.06 1.38 4.52 -17.50 -0.08 1.30 16 17 N -0.82 -21.48 10.62 55.49 0.59 -20.89 16 18 Si 0.93 18.60 29.60 -169.99 -5.03 13.57 16 19 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 20 H -0.28 -5.50 7.11 56.52 0.40 -5.09 16 21 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 22 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.34 4.55 9.07 -39.29 -0.36 4.19 16 26 H 0.35 5.97 8.81 -39.29 -0.35 5.62 16 27 H 0.11 2.12 8.06 -52.48 -0.42 1.70 16 28 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 29 H 0.11 1.93 8.06 -52.48 -0.42 1.51 16 30 H 0.11 2.86 6.25 -52.49 -0.33 2.54 16 31 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 266.30 15.07 4.01 4.01 Total: -1.00 -29.97 266.30 -8.02 -37.99 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -3.48 Total: 13.74 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: -3.81 Total: -12.99 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: 0.29 Total: -56.32 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.97 -8.02 -37.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019734268.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.363 kcal (2) G-P(sol) polarization free energy of solvation -29.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds