Wall clock time and date at job start Mon Mar 30 2020 03:06:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.09001 * 109.47388 * 2 1
4 4 N 1.46899 * 109.47216 * 120.00126 * 2 1 3
5 5 C 1.50699 * 109.46996 * 240.00153 * 2 1 3
6 6 N 1.30093 * 124.98305 * 284.95733 * 5 2 1
7 7 C 1.35892 * 109.73903 * 180.02562 * 6 5 2
8 8 C 1.39675 * 133.50276 * 180.02562 * 7 6 5
9 9 C 1.37715 * 119.77833 * 180.27485 * 8 7 6
10 10 C 1.38723 * 120.51306 * 359.40241 * 9 8 7
11 11 C 1.37954 * 120.44197 * 0.61095 * 10 9 8
12 12 C 1.38714 * 119.83047 * 359.69781 * 11 10 9
13 13 N 1.36538 * 124.98327 * 105.00246 * 5 2 1
14 14 C 1.37313 * 126.39760 * 359.97438 * 13 5 2
15 15 H 1.08004 * 119.99743 * 326.49294 * 14 13 5
16 16 C 1.38906 * 120.00142 * 146.49226 * 14 13 5
17 17 N 1.31378 * 120.00008 * 339.40629 * 16 14 13
18 18 Si 1.86803 * 120.00202 * 159.41211 * 16 14 13
19 19 H 1.48498 * 109.47411 * 59.99420 * 18 16 14
20 20 H 1.48493 * 109.47193 * 179.97438 * 18 16 14
21 21 H 1.48505 * 109.46863 * 299.99748 * 18 16 14
22 22 H 1.08997 * 109.46911 * 179.97438 * 1 2 3
23 23 H 1.08997 * 109.46996 * 299.99978 * 1 2 3
24 24 H 1.09002 * 109.47034 * 59.99868 * 1 2 3
25 25 H 1.00894 * 110.99873 * 296.04513 * 4 2 1
26 26 H 1.00901 * 110.99721 * 59.99776 * 4 2 1
27 27 H 1.08005 * 120.11035 * 359.97438 * 8 7 6
28 28 H 1.08000 * 119.73806 * 179.69705 * 9 8 7
29 29 H 1.08004 * 119.77570 * 180.30652 * 10 9 8
30 30 H 1.07998 * 120.08929 * 179.66098 * 11 10 9
31 31 H 0.97001 * 120.00355 * 180.48441 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 7 2.0197 -0.6925 1.1994
5 6 2.0323 -0.7104 -1.2305
6 7 2.0216 -1.9996 -1.4040
7 6 2.5461 -2.3034 -2.6203
8 6 2.7675 -3.5037 -3.2993
9 6 3.3373 -3.4853 -4.5529
10 6 3.6821 -2.2827 -5.1524
11 6 3.4703 -1.0883 -4.4954
12 6 2.9031 -1.0882 -3.2295
13 7 2.5663 -0.0953 -2.3263
14 6 2.7373 1.2560 -2.4998
15 1 2.0270 1.9493 -2.0738
16 6 3.8238 1.7315 -3.2230
17 7 4.8822 0.9721 -3.3938
18 14 3.7800 3.4506 -3.9525
19 1 3.6103 4.4462 -2.8639
20 1 5.0520 3.7158 -4.6713
21 1 2.6430 3.5566 -4.9019
22 1 -0.3633 -1.0276 -0.0005
23 1 -0.3633 0.5138 0.8900
24 1 -0.3633 0.5139 -0.8900
25 1 1.7503 -0.1990 2.0372
26 1 1.6962 -1.6480 1.2227
27 1 2.4973 -4.4435 -2.8407
28 1 3.5128 -4.4142 -5.0753
29 1 4.1237 -2.2819 -6.1380
30 1 3.7458 -0.1557 -4.9652
31 1 5.6437 1.3067 -3.8929
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000019734268.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:06:24
Heat of formation + Delta-G solvation = 63.374597 kcal
Electronic energy + Delta-G solvation = -16064.245616 eV
Core-core repulsion = 13538.737063 eV
Total energy + Delta-G solvation = -2525.508553 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 231.107 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.75501 -36.47907 -34.90946 -34.00037 -31.19175 -29.14982 -28.51536 -27.55722
-25.20336 -23.29227 -21.10764 -20.61977 -19.05004 -17.65843 -16.58455 -15.36984
-15.20482 -14.64886 -14.43681 -13.92775 -13.44293 -13.00148 -12.85903 -12.72628
-12.60611 -11.97579 -11.51261 -11.39279 -11.32706 -10.90206 -10.78027 -10.69290
-10.33585 -10.28641 -9.49316 -8.86394 -8.63859 -8.26258 -7.20292 -6.89140
-6.66441 -4.50041 2.16326 2.76369 2.99410 3.01915 3.04483 3.76948
4.00761 4.50188 4.68343 5.12942 5.14990 5.35323 5.63030 5.65861
5.83033 5.99197 6.01860 6.22143 6.26147 6.45603 6.65129 6.77276
6.82905 6.96999 7.09351 7.25390 7.54977 7.57737 7.66674 7.89726
7.93863 8.09711 8.20126 8.64311 9.24555 9.42410 10.21674
Molecular weight = 231.11amu
Principal moments of inertia in cm(-1)
A = 0.017163 B = 0.014486 C = 0.008514
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1631.004718 B = 1932.460358 C = 3287.746839
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C 0.183 3.817
3 H 0.095 0.905
4 N -0.833 5.833
5 C 0.224 3.776
6 N -0.523 5.523
7 C 0.028 3.972
8 C -0.089 4.089
9 C -0.146 4.146
10 C -0.159 4.159
11 C -0.044 4.044
12 C 0.046 3.954
13 N -0.283 5.283
14 C -0.363 4.363
15 H 0.107 0.893
16 C 0.056 3.944
17 N -0.817 5.817
18 Si 0.926 3.074
19 H -0.266 1.266
20 H -0.277 1.277
21 H -0.265 1.265
22 H 0.060 0.940
23 H 0.054 0.946
24 H 0.060 0.940
25 H 0.336 0.664
26 H 0.348 0.652
27 H 0.107 0.893
28 H 0.107 0.893
29 H 0.106 0.894
30 H 0.115 0.885
31 H 0.281 0.719
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.293 0.191 1.041 4.422
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.237 4.237
2 C 0.070 3.930
3 H 0.113 0.887
4 N -0.363 5.363
5 C -0.038 4.038
6 N -0.246 5.246
7 C -0.096 4.096
8 C -0.109 4.109
9 C -0.167 4.167
10 C -0.180 4.180
11 C -0.064 4.064
12 C -0.069 4.069
13 N 0.047 4.953
14 C -0.491 4.491
15 H 0.125 0.875
16 C -0.158 4.158
17 N -0.445 5.445
18 Si 0.750 3.250
19 H -0.191 1.191
20 H -0.202 1.202
21 H -0.190 1.190
22 H 0.079 0.921
23 H 0.073 0.927
24 H 0.079 0.921
25 H 0.148 0.852
26 H 0.162 0.838
27 H 0.125 0.875
28 H 0.125 0.875
29 H 0.125 0.875
30 H 0.132 0.868
31 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -3.614 -0.049 1.260 3.827
hybrid contribution -0.395 1.358 -0.724 1.589
sum -4.009 1.309 0.536 4.251
Atomic orbital electron populations
1.22563 0.97031 1.02395 1.01711 1.19435 0.91338 0.96868 0.85381
0.88695 1.58620 1.67799 1.06903 1.02971 1.22789 1.03128 0.88199
0.89693 1.70014 1.25905 1.11724 1.16937 1.18879 1.04556 0.93142
0.93047 1.19856 1.01854 0.94766 0.94432 1.20479 1.03536 0.96993
0.95646 1.20559 1.05447 0.92182 0.99776 1.20032 0.96532 0.97654
0.92164 1.18666 1.06066 0.88541 0.93672 1.41077 1.39232 1.05595
1.09419 1.19557 1.11105 0.79648 1.38796 0.87505 1.25547 0.93465
1.00560 0.96189 1.70063 1.02988 1.38180 1.33316 0.86008 0.78427
0.80807 0.79726 1.19058 1.20176 1.19020 0.92078 0.92678 0.92131
0.85190 0.83807 0.87489 0.87499 0.87542 0.86755 0.90791
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.83 9.46 37.16 0.35 -2.47 16
2 C 0.18 3.55 3.70 -68.86 -0.25 3.29 16
3 H 0.10 1.88 7.27 -51.93 -0.38 1.50 16
4 N -0.83 -14.44 9.21 -5.65 -0.05 -14.49 16
5 C 0.22 5.48 6.68 -154.37 -1.03 4.45 16
6 N -0.52 -13.18 11.05 -8.11 -0.09 -13.27 16
7 C 0.03 0.71 7.23 -84.66 -0.61 0.10 16
8 C -0.09 -1.99 10.10 -39.24 -0.40 -2.39 16
9 C -0.15 -2.96 10.02 -39.59 -0.40 -3.35 16
10 C -0.16 -3.39 10.03 -39.51 -0.40 -3.79 16
11 C -0.04 -1.08 8.57 -39.51 -0.34 -1.42 16
12 C 0.05 1.24 6.16 -83.86 -0.52 0.72 16
13 N -0.28 -7.51 2.86 -56.64 -0.16 -7.67 16
14 C -0.36 -9.30 9.21 -14.85 -0.14 -9.44 16
15 H 0.11 2.53 7.65 -52.48 -0.40 2.13 16
16 C 0.06 1.38 4.52 -17.50 -0.08 1.30 16
17 N -0.82 -21.48 10.62 55.49 0.59 -20.89 16
18 Si 0.93 18.60 29.60 -169.99 -5.03 13.57 16
19 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16
20 H -0.28 -5.50 7.11 56.52 0.40 -5.09 16
21 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16
22 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16
23 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16
24 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16
25 H 0.34 4.55 9.07 -39.29 -0.36 4.19 16
26 H 0.35 5.97 8.81 -39.29 -0.35 5.62 16
27 H 0.11 2.12 8.06 -52.48 -0.42 1.70 16
28 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16
29 H 0.11 1.93 8.06 -52.48 -0.42 1.51 16
30 H 0.11 2.86 6.25 -52.49 -0.33 2.54 16
31 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16
LS Contribution 266.30 15.07 4.01 4.01
Total: -1.00 -29.97 266.30 -8.02 -37.99
By element:
Atomic # 1 Polarization: 17.23 SS G_CDS: -3.48 Total: 13.74 kcal
Atomic # 6 Polarization: -9.18 SS G_CDS: -3.81 Total: -12.99 kcal
Atomic # 7 Polarization: -56.61 SS G_CDS: 0.29 Total: -56.32 kcal
Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal
Total LS contribution 4.01 Total: 4.01 kcal
Total: -29.97 -8.02 -37.99 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000019734268.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 101.363 kcal
(2) G-P(sol) polarization free energy of solvation -29.969 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.395 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.988 kcal
(6) G-S(sol) free energy of system = (1) + (5) 63.375 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds