Wall clock time and date at job start Mon Mar 30 2020 03:06:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.09001 * 109.47388 * 2 1
4 4 N 1.46899 * 109.47216 * 120.00126 * 2 1 3
5 5 C 1.50699 * 109.46996 * 240.00153 * 2 1 3
6 6 N 1.30093 * 124.98305 * 284.95733 * 5 2 1
7 7 C 1.35892 * 109.73903 * 180.02562 * 6 5 2
8 8 C 1.39675 * 133.50276 * 180.02562 * 7 6 5
9 9 C 1.37715 * 119.77833 * 180.27485 * 8 7 6
10 10 C 1.38723 * 120.51306 * 359.40241 * 9 8 7
11 11 C 1.37954 * 120.44197 * 0.61095 * 10 9 8
12 12 C 1.38714 * 119.83047 * 359.69781 * 11 10 9
13 13 N 1.36538 * 124.98327 * 105.00246 * 5 2 1
14 14 C 1.37313 * 126.39760 * 359.97438 * 13 5 2
15 15 H 1.08004 * 119.99743 * 326.49294 * 14 13 5
16 16 C 1.38906 * 120.00142 * 146.49226 * 14 13 5
17 17 N 1.31378 * 120.00008 * 339.40629 * 16 14 13
18 18 Si 1.86803 * 120.00202 * 159.41211 * 16 14 13
19 19 H 1.48498 * 109.47411 * 59.99420 * 18 16 14
20 20 H 1.48493 * 109.47193 * 179.97438 * 18 16 14
21 21 H 1.48505 * 109.46863 * 299.99748 * 18 16 14
22 22 H 1.08997 * 109.46911 * 179.97438 * 1 2 3
23 23 H 1.08997 * 109.46996 * 299.99978 * 1 2 3
24 24 H 1.09002 * 109.47034 * 59.99868 * 1 2 3
25 25 H 1.00894 * 110.99873 * 296.04513 * 4 2 1
26 26 H 1.00901 * 110.99721 * 59.99776 * 4 2 1
27 27 H 1.08005 * 120.11035 * 359.97438 * 8 7 6
28 28 H 1.08000 * 119.73806 * 179.69705 * 9 8 7
29 29 H 1.08004 * 119.77570 * 180.30652 * 10 9 8
30 30 H 1.07998 * 120.08929 * 179.66098 * 11 10 9
31 31 H 0.97001 * 120.00355 * 180.48441 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 7 2.0197 -0.6925 1.1994
5 6 2.0323 -0.7104 -1.2305
6 7 2.0216 -1.9996 -1.4040
7 6 2.5461 -2.3034 -2.6203
8 6 2.7675 -3.5037 -3.2993
9 6 3.3373 -3.4853 -4.5529
10 6 3.6821 -2.2827 -5.1524
11 6 3.4703 -1.0883 -4.4954
12 6 2.9031 -1.0882 -3.2295
13 7 2.5663 -0.0953 -2.3263
14 6 2.7373 1.2560 -2.4998
15 1 2.0270 1.9493 -2.0738
16 6 3.8238 1.7315 -3.2230
17 7 4.8822 0.9721 -3.3938
18 14 3.7800 3.4506 -3.9525
19 1 3.6103 4.4462 -2.8639
20 1 5.0520 3.7158 -4.6713
21 1 2.6430 3.5566 -4.9019
22 1 -0.3633 -1.0276 -0.0005
23 1 -0.3633 0.5138 0.8900
24 1 -0.3633 0.5139 -0.8900
25 1 1.7503 -0.1990 2.0372
26 1 1.6962 -1.6480 1.2227
27 1 2.4973 -4.4435 -2.8407
28 1 3.5128 -4.4142 -5.0753
29 1 4.1237 -2.2819 -6.1380
30 1 3.7458 -0.1557 -4.9652
31 1 5.6437 1.3067 -3.8929
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000019734268.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:06:24
Heat of formation + Delta-G solvation = 43.527569 kcal
Electronic energy + Delta-G solvation = -16065.106248 eV
Core-core repulsion = 13538.737063 eV
Total energy + Delta-G solvation = -2526.369185 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 231.107 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-42.57135 -38.15752 -36.50626 -35.78749 -33.06707 -30.90908 -30.06731 -29.14006
-27.09064 -24.88720 -22.91131 -22.37133 -20.79617 -19.47186 -18.26412 -17.22366
-16.79910 -16.35515 -16.06315 -15.60969 -14.99676 -14.73224 -14.63046 -14.20907
-14.06154 -13.72184 -13.21036 -12.98082 -12.87086 -12.56644 -12.36330 -12.24874
-12.02360 -11.98534 -11.32070 -10.71738 -10.51501 -9.64988 -9.03930 -8.70373
-8.49752 -6.43487 0.37869 1.01706 1.34882 1.41854 1.48769 2.07362
2.22261 2.77757 2.85535 3.31412 3.54269 3.86967 4.06908 4.22640
4.27061 4.39411 4.52238 4.72990 4.83867 4.89148 4.99145 5.06528
5.13096 5.18858 5.34529 5.46364 5.79735 5.89115 6.09625 6.19076
6.27408 6.41541 6.71636 6.77147 7.39107 7.55721 8.38680
Molecular weight = 231.11amu
Principal moments of inertia in cm(-1)
A = 0.017163 B = 0.014486 C = 0.008514
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1631.004718 B = 1932.460358 C = 3287.746839
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.184 3.816
3 H 0.087 0.913
4 N -0.839 5.839
5 C 0.211 3.789
6 N -0.536 5.536
7 C -0.006 4.006
8 C -0.100 4.100
9 C -0.133 4.133
10 C -0.148 4.148
11 C -0.074 4.074
12 C 0.011 3.989
13 N -0.305 5.305
14 C -0.390 4.390
15 H 0.116 0.884
16 C 0.016 3.984
17 N -0.855 5.855
18 Si 0.999 3.001
19 H -0.254 1.254
20 H -0.273 1.273
21 H -0.262 1.262
22 H 0.056 0.944
23 H 0.093 0.907
24 H 0.049 0.951
25 H 0.358 0.642
26 H 0.350 0.650
27 H 0.130 0.870
28 H 0.155 0.845
29 H 0.142 0.858
30 H 0.100 0.900
31 H 0.283 0.717
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.628 0.084 0.671 4.677
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C 0.070 3.930
3 H 0.105 0.895
4 N -0.372 5.372
5 C -0.052 4.052
6 N -0.259 5.259
7 C -0.130 4.130
8 C -0.120 4.120
9 C -0.153 4.153
10 C -0.169 4.169
11 C -0.095 4.095
12 C -0.104 4.104
13 N 0.024 4.976
14 C -0.518 4.518
15 H 0.133 0.867
16 C -0.194 4.194
17 N -0.485 5.485
18 Si 0.819 3.181
19 H -0.177 1.177
20 H -0.198 1.198
21 H -0.187 1.187
22 H 0.075 0.925
23 H 0.112 0.888
24 H 0.068 0.932
25 H 0.173 0.827
26 H 0.163 0.837
27 H 0.148 0.852
28 H 0.173 0.827
29 H 0.160 0.840
30 H 0.118 0.882
31 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -3.962 -0.167 0.912 4.069
hybrid contribution -0.275 1.266 -0.612 1.432
sum -4.237 1.099 0.301 4.387
Atomic orbital electron populations
1.22438 0.94309 1.02508 1.03051 1.19507 0.93315 0.95789 0.84347
0.89541 1.58514 1.68210 1.07184 1.03311 1.23788 1.02249 0.88449
0.90705 1.70003 1.26569 1.12269 1.17065 1.19509 1.05568 0.94250
0.93625 1.20290 1.01850 0.94592 0.95225 1.20986 1.01134 0.98448
0.94763 1.21035 1.03603 0.91413 1.00811 1.20167 0.98384 0.98587
0.92317 1.19193 1.07206 0.89257 0.94752 1.41362 1.40125 1.06001
1.10156 1.19995 1.11887 0.79914 1.39968 0.86673 1.26522 0.92539
1.04576 0.95754 1.70167 1.03753 1.40295 1.34266 0.84927 0.78381
0.75775 0.79008 1.17746 1.19794 1.18684 0.92523 0.88840 0.93193
0.82663 0.83660 0.85199 0.82712 0.84043 0.88158 0.90650
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.04 9.46 71.98 0.68 -4.36 16
2 C 0.18 7.11 3.70 44.17 0.16 7.28 16
3 H 0.09 3.46 7.27 -2.39 -0.02 3.44 16
4 N -0.84 -28.53 9.21 -171.80 -1.58 -30.12 16
5 C 0.21 10.53 6.68 137.76 0.92 11.45 16
6 N -0.54 -27.48 11.05 -179.56 -1.98 -29.46 16
7 C -0.01 -0.33 7.23 39.42 0.28 -0.05 16
8 C -0.10 -4.33 10.10 22.49 0.23 -4.10 16
9 C -0.13 -5.02 10.02 22.26 0.22 -4.80 16
10 C -0.15 -6.07 10.03 22.32 0.22 -5.85 16
11 C -0.07 -3.71 8.57 22.32 0.19 -3.52 16
12 C 0.01 0.60 6.16 38.79 0.24 0.84 16
13 N -0.31 -16.70 2.86 -333.12 -0.95 -17.65 16
14 C -0.39 -20.54 9.21 83.99 0.77 -19.76 16
15 H 0.12 5.58 7.65 -2.91 -0.02 5.56 16
16 C 0.02 0.79 4.52 84.92 0.38 1.17 16
17 N -0.86 -46.15 10.62 21.65 0.23 -45.92 16
18 Si 1.00 38.34 29.60 68.60 2.03 40.37 16
19 H -0.25 -9.14 7.11 99.48 0.71 -8.44 16
20 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16
21 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16
22 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16
23 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16
24 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16
25 H 0.36 9.14 9.07 -89.70 -0.81 8.32 16
26 H 0.35 11.79 8.81 -89.69 -0.79 11.00 16
27 H 0.13 4.90 8.06 -2.91 -0.02 4.88 16
28 H 0.16 4.36 8.06 -2.91 -0.02 4.33 16
29 H 0.14 4.70 8.06 -2.91 -0.02 4.68 16
30 H 0.10 5.19 6.25 -2.91 -0.02 5.17 16
31 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16
Total: -1.00 -66.85 266.30 1.61 -65.24
By element:
Atomic # 1 Polarization: 39.67 SS G_CDS: -0.44 Total: 39.23 kcal
Atomic # 6 Polarization: -26.01 SS G_CDS: 4.31 Total: -21.70 kcal
Atomic # 7 Polarization: -118.86 SS G_CDS: -4.29 Total: -123.15 kcal
Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.37 kcal
Total: -66.85 1.61 -65.24 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000019734268.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 108.768 kcal
(2) G-P(sol) polarization free energy of solvation -66.852 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.915 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.612 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.240 kcal
(6) G-S(sol) free energy of system = (1) + (5) 43.528 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds