Wall clock time and date at job start Mon Mar 30 2020 03:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47388 * 2 1 4 4 N 1.46899 * 109.47216 * 120.00126 * 2 1 3 5 5 C 1.50699 * 109.46996 * 240.00153 * 2 1 3 6 6 N 1.30093 * 124.98305 * 284.95733 * 5 2 1 7 7 C 1.35892 * 109.73903 * 180.02562 * 6 5 2 8 8 C 1.39675 * 133.50276 * 180.02562 * 7 6 5 9 9 C 1.37715 * 119.77833 * 180.27485 * 8 7 6 10 10 C 1.38723 * 120.51306 * 359.40241 * 9 8 7 11 11 C 1.37954 * 120.44197 * 0.61095 * 10 9 8 12 12 C 1.38714 * 119.83047 * 359.69781 * 11 10 9 13 13 N 1.36538 * 124.98327 * 105.00246 * 5 2 1 14 14 C 1.37313 * 126.39760 * 359.97438 * 13 5 2 15 15 H 1.08004 * 119.99743 * 326.49294 * 14 13 5 16 16 C 1.38906 * 120.00142 * 146.49226 * 14 13 5 17 17 N 1.31378 * 120.00008 * 339.40629 * 16 14 13 18 18 Si 1.86803 * 120.00202 * 159.41211 * 16 14 13 19 19 H 1.48498 * 109.47411 * 59.99420 * 18 16 14 20 20 H 1.48493 * 109.47193 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46863 * 299.99748 * 18 16 14 22 22 H 1.08997 * 109.46911 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46996 * 299.99978 * 1 2 3 24 24 H 1.09002 * 109.47034 * 59.99868 * 1 2 3 25 25 H 1.00894 * 110.99873 * 296.04513 * 4 2 1 26 26 H 1.00901 * 110.99721 * 59.99776 * 4 2 1 27 27 H 1.08005 * 120.11035 * 359.97438 * 8 7 6 28 28 H 1.08000 * 119.73806 * 179.69705 * 9 8 7 29 29 H 1.08004 * 119.77570 * 180.30652 * 10 9 8 30 30 H 1.07998 * 120.08929 * 179.66098 * 11 10 9 31 31 H 0.97001 * 120.00355 * 180.48441 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0323 -0.7104 -1.2305 6 7 2.0216 -1.9996 -1.4040 7 6 2.5461 -2.3034 -2.6203 8 6 2.7675 -3.5037 -3.2993 9 6 3.3373 -3.4853 -4.5529 10 6 3.6821 -2.2827 -5.1524 11 6 3.4703 -1.0883 -4.4954 12 6 2.9031 -1.0882 -3.2295 13 7 2.5663 -0.0953 -2.3263 14 6 2.7373 1.2560 -2.4998 15 1 2.0270 1.9493 -2.0738 16 6 3.8238 1.7315 -3.2230 17 7 4.8822 0.9721 -3.3938 18 14 3.7800 3.4506 -3.9525 19 1 3.6103 4.4462 -2.8639 20 1 5.0520 3.7158 -4.6713 21 1 2.6430 3.5566 -4.9019 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.7503 -0.1990 2.0372 26 1 1.6962 -1.6480 1.2227 27 1 2.4973 -4.4435 -2.8407 28 1 3.5128 -4.4142 -5.0753 29 1 4.1237 -2.2819 -6.1380 30 1 3.7458 -0.1557 -4.9652 31 1 5.6437 1.3067 -3.8929 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019734268.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:24 Heat of formation + Delta-G solvation = 43.527569 kcal Electronic energy + Delta-G solvation = -16065.106248 eV Core-core repulsion = 13538.737063 eV Total energy + Delta-G solvation = -2526.369185 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.57135 -38.15752 -36.50626 -35.78749 -33.06707 -30.90908 -30.06731 -29.14006 -27.09064 -24.88720 -22.91131 -22.37133 -20.79617 -19.47186 -18.26412 -17.22366 -16.79910 -16.35515 -16.06315 -15.60969 -14.99676 -14.73224 -14.63046 -14.20907 -14.06154 -13.72184 -13.21036 -12.98082 -12.87086 -12.56644 -12.36330 -12.24874 -12.02360 -11.98534 -11.32070 -10.71738 -10.51501 -9.64988 -9.03930 -8.70373 -8.49752 -6.43487 0.37869 1.01706 1.34882 1.41854 1.48769 2.07362 2.22261 2.77757 2.85535 3.31412 3.54269 3.86967 4.06908 4.22640 4.27061 4.39411 4.52238 4.72990 4.83867 4.89148 4.99145 5.06528 5.13096 5.18858 5.34529 5.46364 5.79735 5.89115 6.09625 6.19076 6.27408 6.41541 6.71636 6.77147 7.39107 7.55721 8.38680 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.017163 B = 0.014486 C = 0.008514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.004718 B = 1932.460358 C = 3287.746839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.184 3.816 3 H 0.087 0.913 4 N -0.839 5.839 5 C 0.211 3.789 6 N -0.536 5.536 7 C -0.006 4.006 8 C -0.100 4.100 9 C -0.133 4.133 10 C -0.148 4.148 11 C -0.074 4.074 12 C 0.011 3.989 13 N -0.305 5.305 14 C -0.390 4.390 15 H 0.116 0.884 16 C 0.016 3.984 17 N -0.855 5.855 18 Si 0.999 3.001 19 H -0.254 1.254 20 H -0.273 1.273 21 H -0.262 1.262 22 H 0.056 0.944 23 H 0.093 0.907 24 H 0.049 0.951 25 H 0.358 0.642 26 H 0.350 0.650 27 H 0.130 0.870 28 H 0.155 0.845 29 H 0.142 0.858 30 H 0.100 0.900 31 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.628 0.084 0.671 4.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.070 3.930 3 H 0.105 0.895 4 N -0.372 5.372 5 C -0.052 4.052 6 N -0.259 5.259 7 C -0.130 4.130 8 C -0.120 4.120 9 C -0.153 4.153 10 C -0.169 4.169 11 C -0.095 4.095 12 C -0.104 4.104 13 N 0.024 4.976 14 C -0.518 4.518 15 H 0.133 0.867 16 C -0.194 4.194 17 N -0.485 5.485 18 Si 0.819 3.181 19 H -0.177 1.177 20 H -0.198 1.198 21 H -0.187 1.187 22 H 0.075 0.925 23 H 0.112 0.888 24 H 0.068 0.932 25 H 0.173 0.827 26 H 0.163 0.837 27 H 0.148 0.852 28 H 0.173 0.827 29 H 0.160 0.840 30 H 0.118 0.882 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.962 -0.167 0.912 4.069 hybrid contribution -0.275 1.266 -0.612 1.432 sum -4.237 1.099 0.301 4.387 Atomic orbital electron populations 1.22438 0.94309 1.02508 1.03051 1.19507 0.93315 0.95789 0.84347 0.89541 1.58514 1.68210 1.07184 1.03311 1.23788 1.02249 0.88449 0.90705 1.70003 1.26569 1.12269 1.17065 1.19509 1.05568 0.94250 0.93625 1.20290 1.01850 0.94592 0.95225 1.20986 1.01134 0.98448 0.94763 1.21035 1.03603 0.91413 1.00811 1.20167 0.98384 0.98587 0.92317 1.19193 1.07206 0.89257 0.94752 1.41362 1.40125 1.06001 1.10156 1.19995 1.11887 0.79914 1.39968 0.86673 1.26522 0.92539 1.04576 0.95754 1.70167 1.03753 1.40295 1.34266 0.84927 0.78381 0.75775 0.79008 1.17746 1.19794 1.18684 0.92523 0.88840 0.93193 0.82663 0.83660 0.85199 0.82712 0.84043 0.88158 0.90650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.04 9.46 71.98 0.68 -4.36 16 2 C 0.18 7.11 3.70 44.17 0.16 7.28 16 3 H 0.09 3.46 7.27 -2.39 -0.02 3.44 16 4 N -0.84 -28.53 9.21 -171.80 -1.58 -30.12 16 5 C 0.21 10.53 6.68 137.76 0.92 11.45 16 6 N -0.54 -27.48 11.05 -179.56 -1.98 -29.46 16 7 C -0.01 -0.33 7.23 39.42 0.28 -0.05 16 8 C -0.10 -4.33 10.10 22.49 0.23 -4.10 16 9 C -0.13 -5.02 10.02 22.26 0.22 -4.80 16 10 C -0.15 -6.07 10.03 22.32 0.22 -5.85 16 11 C -0.07 -3.71 8.57 22.32 0.19 -3.52 16 12 C 0.01 0.60 6.16 38.79 0.24 0.84 16 13 N -0.31 -16.70 2.86 -333.12 -0.95 -17.65 16 14 C -0.39 -20.54 9.21 83.99 0.77 -19.76 16 15 H 0.12 5.58 7.65 -2.91 -0.02 5.56 16 16 C 0.02 0.79 4.52 84.92 0.38 1.17 16 17 N -0.86 -46.15 10.62 21.65 0.23 -45.92 16 18 Si 1.00 38.34 29.60 68.60 2.03 40.37 16 19 H -0.25 -9.14 7.11 99.48 0.71 -8.44 16 20 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 21 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 22 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 23 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 24 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.36 9.14 9.07 -89.70 -0.81 8.32 16 26 H 0.35 11.79 8.81 -89.69 -0.79 11.00 16 27 H 0.13 4.90 8.06 -2.91 -0.02 4.88 16 28 H 0.16 4.36 8.06 -2.91 -0.02 4.33 16 29 H 0.14 4.70 8.06 -2.91 -0.02 4.68 16 30 H 0.10 5.19 6.25 -2.91 -0.02 5.17 16 31 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -66.85 266.30 1.61 -65.24 By element: Atomic # 1 Polarization: 39.67 SS G_CDS: -0.44 Total: 39.23 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: 4.31 Total: -21.70 kcal Atomic # 7 Polarization: -118.86 SS G_CDS: -4.29 Total: -123.15 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.37 kcal Total: -66.85 1.61 -65.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019734268.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.768 kcal (2) G-P(sol) polarization free energy of solvation -66.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds