Wall clock time and date at job start Mon Mar 30 2020 03:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46896 * 111.00126 * 2 1 4 4 C 1.50699 * 109.47090 * 293.95397 * 3 2 1 5 5 H 1.07998 * 120.00144 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00178 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99937 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00136 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.47190 * 60.00098 * 8 6 4 10 10 H 1.48497 * 109.47185 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47062 * 300.00630 * 8 6 4 12 12 C 1.39485 * 110.99899 * 123.95435 * 2 1 3 13 13 C 1.38944 * 119.94755 * 295.76768 * 12 2 1 14 14 C 1.37797 * 120.15752 * 179.72252 * 13 12 2 15 15 C 1.39756 * 120.04303 * 0.55290 * 14 13 12 16 16 C 1.43203 * 120.05500 * 179.69848 * 15 14 13 17 17 N 6.73857 * 110.96634 * 123.86212 * 2 1 3 18 18 C 1.39816 * 119.89246 * 359.72494 * 15 14 13 19 19 C 1.38224 * 119.84330 * 359.97438 * 18 15 14 20 20 N 1.40032 * 120.01892 * 180.02562 * 19 18 15 21 21 H 1.09009 * 109.47037 * 296.04385 * 1 2 3 22 22 H 1.08992 * 109.47254 * 56.04810 * 1 2 3 23 23 H 1.09004 * 109.47303 * 176.04758 * 1 2 3 24 24 H 1.09003 * 109.47282 * 53.95191 * 3 2 1 25 25 H 1.09001 * 109.47321 * 173.95223 * 3 2 1 26 26 H 0.96997 * 119.99980 * 179.97438 * 7 6 4 27 27 H 1.08000 * 119.91885 * 0.02562 * 13 12 2 28 28 H 1.08007 * 119.97719 * 180.28282 * 14 13 12 29 29 H 1.08001 * 120.07730 * 180.02562 * 18 15 14 30 30 H 0.97000 * 120.00205 * 179.97438 * 20 19 18 31 31 H 0.97005 * 120.00598 * 359.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0740 1.5115 -2.0484 6 6 2.0268 3.3494 -1.5285 7 7 2.7120 4.0019 -0.6150 8 14 1.5831 4.1867 -3.1383 9 1 0.1059 4.2229 -3.2866 10 1 2.1151 5.5731 -3.1382 11 1 2.1757 3.4295 -4.2699 12 6 1.9689 -0.7273 1.0802 13 6 1.7288 -0.2944 2.3784 14 6 2.2157 -1.0127 3.4489 15 6 2.9628 -2.1735 3.2308 16 6 3.4744 -2.9166 4.3429 17 7 3.8802 -3.5061 5.2251 18 6 3.2105 -2.6078 1.9251 19 6 2.7146 -1.8871 0.8548 20 7 2.9600 -2.3190 -0.4545 21 1 -0.3633 0.4512 0.9234 22 1 -0.3633 0.5739 -0.8524 23 1 -0.3634 -1.0252 -0.0708 24 1 1.5611 1.9273 0.8309 25 1 3.0797 1.3444 0.1083 26 1 2.9866 4.9179 -0.7770 27 1 1.1551 0.6045 2.5491 28 1 2.0235 -0.6760 4.4569 29 1 3.7872 -3.5046 1.7531 30 1 2.6116 -1.8133 -1.2053 31 1 3.4784 -3.1239 -0.6106 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035674255.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:59 Heat of formation + Delta-G solvation = 61.494236 kcal Electronic energy + Delta-G solvation = -15247.247693 eV Core-core repulsion = 12721.657601 eV Total energy + Delta-G solvation = -2525.590092 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.69941 -36.92388 -35.64852 -34.09142 -32.63476 -29.99032 -28.40095 -27.26528 -25.36781 -23.17251 -21.97939 -20.66789 -18.63107 -16.76030 -16.50718 -15.71483 -15.22902 -14.77641 -14.36236 -13.99765 -13.61890 -13.53668 -13.40923 -13.13295 -12.42076 -12.24156 -12.14471 -11.91187 -11.40385 -11.15614 -11.00966 -10.73607 -10.60002 -10.31695 -10.06594 -9.37692 -8.52550 -8.47488 -7.58220 -7.18691 -6.10340 -4.13123 1.02560 1.80586 2.77185 3.17064 3.28163 3.33423 3.35099 3.97468 4.15659 4.31381 4.37794 4.72460 5.18079 5.25409 5.34922 5.64633 5.80632 6.01625 6.06662 6.14729 6.22752 6.52849 6.62200 6.72461 6.89481 7.21757 7.23180 7.58982 7.66347 7.79968 7.95311 8.08157 8.19868 8.50209 8.93191 9.51440 11.00093 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.042167 B = 0.005870 C = 0.005629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.861981 B = 4768.696598 C = 4973.231040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.510 5.510 3 C 0.199 3.801 4 C -0.514 4.514 5 H 0.064 0.936 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.071 3.929 13 C -0.108 4.108 14 C -0.118 4.118 15 C -0.008 4.008 16 C 0.269 3.731 17 N -0.441 5.441 18 C -0.156 4.156 19 C 0.232 3.768 20 N -0.864 5.864 21 H 0.019 0.981 22 H 0.080 0.920 23 H 0.047 0.953 24 H -0.002 1.002 25 H 0.032 0.968 26 H 0.263 0.737 27 H 0.130 0.870 28 H 0.123 0.877 29 H 0.126 0.874 30 H 0.413 0.587 31 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.089 -9.836 1.993 10.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.232 5.232 3 C 0.076 3.924 4 C -0.552 4.552 5 H 0.082 0.918 6 C -0.144 4.144 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C -0.029 4.029 13 C -0.129 4.129 14 C -0.141 4.141 15 C -0.012 4.012 16 C -0.045 4.045 17 N -0.117 5.117 18 C -0.182 4.182 19 C 0.124 3.876 20 N -0.403 5.403 21 H 0.038 0.962 22 H 0.098 0.902 23 H 0.066 0.934 24 H 0.016 0.984 25 H 0.050 0.950 26 H 0.073 0.927 27 H 0.148 0.852 28 H 0.141 0.859 29 H 0.144 0.856 30 H 0.245 0.755 31 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -1.234 -10.755 2.947 11.220 hybrid contribution -0.451 1.175 -0.771 1.476 sum -1.685 -9.580 2.175 9.968 Atomic orbital electron populations 1.22271 0.87031 0.99995 1.01217 1.59640 1.07586 1.18313 1.37678 1.19824 0.95556 0.80054 0.96979 1.21081 1.35411 0.97025 1.01705 0.91785 1.24974 0.95150 0.97307 0.96966 1.69942 1.37858 1.11572 1.34060 0.86554 0.78704 0.78415 0.83680 1.20240 1.21352 1.20177 1.18849 0.99481 0.94309 0.90298 1.21496 0.99593 0.99513 0.92313 1.20717 0.99778 0.94415 0.99208 1.15660 1.02299 0.95637 0.87609 1.25860 0.92925 0.92860 0.92883 1.81194 1.09945 1.09902 1.10646 1.20298 1.06047 1.02028 0.89829 1.17419 0.92939 0.91675 0.85532 1.42458 1.61876 1.31310 1.04635 0.96209 0.90171 0.93420 0.98388 0.95019 0.92734 0.85242 0.85935 0.85642 0.75520 0.78181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 9.20 60.07 0.55 1.28 16 2 N -0.51 -9.80 3.86 -180.12 -0.70 -10.50 16 3 C 0.20 4.78 4.29 -4.98 -0.02 4.76 16 4 C -0.51 -13.39 8.46 -34.44 -0.29 -13.68 16 5 H 0.06 1.63 7.12 -52.49 -0.37 1.25 16 6 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -25.51 13.29 55.43 0.74 -24.77 16 8 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 C 0.07 1.20 4.70 -83.56 -0.39 0.81 16 13 C -0.11 -1.71 8.62 -39.48 -0.34 -2.05 16 14 C -0.12 -1.62 9.74 -39.18 -0.38 -2.00 16 15 C -0.01 -0.11 5.74 -106.81 -0.61 -0.72 16 16 C 0.27 3.79 15.32 -22.47 -0.34 3.45 16 17 N -0.44 -6.91 18.54 41.84 0.78 -6.14 16 18 C -0.16 -2.03 9.59 -39.00 -0.37 -2.40 16 19 C 0.23 3.41 6.77 -83.56 -0.57 2.85 16 20 N -0.86 -11.01 9.09 32.51 0.30 -10.72 16 21 H 0.02 0.33 7.34 -51.92 -0.38 -0.05 16 22 H 0.08 1.48 6.76 -51.93 -0.35 1.13 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.00 -0.04 7.44 -51.93 -0.39 -0.43 16 25 H 0.03 0.84 8.06 -51.93 -0.42 0.42 16 26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.13 2.07 7.10 -52.49 -0.37 1.70 16 28 H 0.12 1.45 8.06 -52.48 -0.42 1.02 16 29 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.41 5.80 8.10 -40.82 -0.33 5.47 16 31 H 0.39 3.76 8.84 -40.82 -0.36 3.40 16 LS Contribution 276.86 15.07 4.17 4.17 Total: -1.00 -28.57 276.86 -5.98 -34.55 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -3.38 Total: 4.06 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -2.87 Total: -6.24 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: 1.11 Total: -52.12 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.57 -5.98 -34.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035674255.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.045 kcal (2) G-P(sol) polarization free energy of solvation -28.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds