Wall clock time and date at job start Mon Mar 30 2020 03:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46896 * 111.00126 * 2 1 4 4 C 1.50699 * 109.47090 * 293.95397 * 3 2 1 5 5 H 1.07998 * 120.00144 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00178 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99937 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00136 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.47190 * 60.00098 * 8 6 4 10 10 H 1.48497 * 109.47185 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47062 * 300.00630 * 8 6 4 12 12 C 1.39485 * 110.99899 * 123.95435 * 2 1 3 13 13 C 1.38944 * 119.94755 * 295.76768 * 12 2 1 14 14 C 1.37797 * 120.15752 * 179.72252 * 13 12 2 15 15 C 1.39756 * 120.04303 * 0.55290 * 14 13 12 16 16 C 1.43203 * 120.05500 * 179.69848 * 15 14 13 17 17 N 6.73857 * 110.96634 * 123.86212 * 2 1 3 18 18 C 1.39816 * 119.89246 * 359.72494 * 15 14 13 19 19 C 1.38224 * 119.84330 * 359.97438 * 18 15 14 20 20 N 1.40032 * 120.01892 * 180.02562 * 19 18 15 21 21 H 1.09009 * 109.47037 * 296.04385 * 1 2 3 22 22 H 1.08992 * 109.47254 * 56.04810 * 1 2 3 23 23 H 1.09004 * 109.47303 * 176.04758 * 1 2 3 24 24 H 1.09003 * 109.47282 * 53.95191 * 3 2 1 25 25 H 1.09001 * 109.47321 * 173.95223 * 3 2 1 26 26 H 0.96997 * 119.99980 * 179.97438 * 7 6 4 27 27 H 1.08000 * 119.91885 * 0.02562 * 13 12 2 28 28 H 1.08007 * 119.97719 * 180.28282 * 14 13 12 29 29 H 1.08001 * 120.07730 * 180.02562 * 18 15 14 30 30 H 0.97000 * 120.00205 * 179.97438 * 20 19 18 31 31 H 0.97005 * 120.00598 * 359.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0740 1.5115 -2.0484 6 6 2.0268 3.3494 -1.5285 7 7 2.7120 4.0019 -0.6150 8 14 1.5831 4.1867 -3.1383 9 1 0.1059 4.2229 -3.2866 10 1 2.1151 5.5731 -3.1382 11 1 2.1757 3.4295 -4.2699 12 6 1.9689 -0.7273 1.0802 13 6 1.7288 -0.2944 2.3784 14 6 2.2157 -1.0127 3.4489 15 6 2.9628 -2.1735 3.2308 16 6 3.4744 -2.9166 4.3429 17 7 3.8802 -3.5061 5.2251 18 6 3.2105 -2.6078 1.9251 19 6 2.7146 -1.8871 0.8548 20 7 2.9600 -2.3190 -0.4545 21 1 -0.3633 0.4512 0.9234 22 1 -0.3633 0.5739 -0.8524 23 1 -0.3634 -1.0252 -0.0708 24 1 1.5611 1.9273 0.8309 25 1 3.0797 1.3444 0.1083 26 1 2.9866 4.9179 -0.7770 27 1 1.1551 0.6045 2.5491 28 1 2.0235 -0.6760 4.4569 29 1 3.7872 -3.5046 1.7531 30 1 2.6116 -1.8133 -1.2053 31 1 3.4784 -3.1239 -0.6106 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035674255.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:59 Heat of formation + Delta-G solvation = 43.379136 kcal Electronic energy + Delta-G solvation = -15248.033222 eV Core-core repulsion = 12721.657601 eV Total energy + Delta-G solvation = -2526.375621 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.93423 -38.22986 -36.99600 -35.20123 -34.60778 -31.28679 -29.64216 -29.00605 -26.84973 -24.79578 -23.15719 -22.18912 -19.77367 -18.53851 -17.76174 -17.21529 -16.58320 -16.39826 -15.59011 -15.43051 -14.90868 -14.76758 -14.69896 -14.53902 -13.95788 -13.67630 -13.49880 -13.28483 -12.94730 -12.77641 -12.53321 -12.35784 -12.21704 -11.93146 -11.43970 -11.29718 -10.56959 -9.68372 -9.16184 -8.31455 -8.14397 -6.25492 -0.15288 0.66508 1.46556 1.48374 1.56112 1.62990 2.00012 2.44340 2.82496 3.00300 3.17181 3.20943 3.37990 4.03319 4.27792 4.44847 4.54181 4.69811 4.82193 4.95491 5.00354 5.16088 5.21460 5.32696 5.41204 5.56911 5.71314 5.80235 6.11798 6.24691 6.45346 6.60588 6.90115 6.93645 7.22414 7.44223 8.94920 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.042167 B = 0.005870 C = 0.005629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.861981 B = 4768.696598 C = 4973.231040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.505 5.505 3 C 0.218 3.782 4 C -0.522 4.522 5 H 0.069 0.931 6 C 0.004 3.996 7 N -0.934 5.934 8 Si 0.966 3.034 9 H -0.267 1.267 10 H -0.289 1.289 11 H -0.268 1.268 12 C 0.034 3.966 13 C -0.115 4.115 14 C -0.114 4.114 15 C 0.000 4.000 16 C 0.289 3.711 17 N -0.464 5.464 18 C -0.142 4.142 19 C 0.230 3.770 20 N -0.856 5.856 21 H 0.019 0.981 22 H 0.065 0.935 23 H 0.074 0.926 24 H -0.028 1.028 25 H -0.001 1.001 26 H 0.263 0.737 27 H 0.118 0.882 28 H 0.142 0.858 29 H 0.155 0.845 30 H 0.408 0.592 31 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.249 -11.233 1.451 11.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.226 5.226 3 C 0.093 3.907 4 C -0.561 4.561 5 H 0.087 0.913 6 C -0.194 4.194 7 N -0.575 5.575 8 Si 0.791 3.209 9 H -0.192 1.192 10 H -0.215 1.215 11 H -0.193 1.193 12 C -0.066 4.066 13 C -0.136 4.136 14 C -0.138 4.138 15 C -0.004 4.004 16 C -0.025 4.025 17 N -0.140 5.140 18 C -0.168 4.168 19 C 0.122 3.878 20 N -0.395 5.395 21 H 0.037 0.963 22 H 0.084 0.916 23 H 0.093 0.907 24 H -0.010 1.010 25 H 0.017 0.983 26 H 0.072 0.928 27 H 0.136 0.864 28 H 0.160 0.840 29 H 0.173 0.827 30 H 0.238 0.762 31 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -1.396 -12.202 2.397 12.513 hybrid contribution -0.386 1.521 -0.538 1.659 sum -1.782 -10.681 1.860 10.987 Atomic orbital electron populations 1.22271 0.86058 1.01416 1.00508 1.59468 1.08485 1.15402 1.39235 1.19387 0.93383 0.82638 0.95285 1.21452 1.34831 0.97350 1.02423 0.91270 1.25854 0.95055 0.98151 1.00347 1.70081 1.39318 1.11864 1.36194 0.85487 0.78823 0.77063 0.79533 1.19187 1.21459 1.19312 1.18990 1.01847 0.95695 0.90038 1.21424 1.00050 0.99515 0.92635 1.20828 0.99239 0.94175 0.99530 1.15674 1.01771 0.95259 0.87726 1.25723 0.92206 0.92201 0.92404 1.81230 1.10739 1.10733 1.11318 1.20544 1.05005 1.02316 0.88932 1.17466 0.92456 0.91184 0.86722 1.42434 1.61672 1.31734 1.03702 0.96269 0.91597 0.90693 1.01030 0.98319 0.92830 0.86418 0.84017 0.82712 0.76166 0.76244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.53 9.20 127.69 1.17 2.70 16 2 N -0.50 -19.49 3.86 -723.77 -2.80 -22.29 16 3 C 0.22 10.81 4.29 85.56 0.37 11.17 16 4 C -0.52 -27.59 8.46 25.60 0.22 -27.37 16 5 H 0.07 3.51 7.12 -2.91 -0.02 3.49 16 6 C 0.00 0.23 5.46 84.66 0.46 0.69 16 7 N -0.93 -54.43 13.29 21.45 0.28 -54.15 16 8 Si 0.97 42.27 29.54 68.60 2.03 44.29 16 9 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 10 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 11 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 12 C 0.03 1.15 4.70 38.45 0.18 1.33 16 13 C -0.12 -3.62 8.62 22.33 0.19 -3.43 16 14 C -0.11 -2.97 9.74 22.53 0.22 -2.75 16 15 C 0.00 0.00 5.74 -21.28 -0.12 -0.13 16 16 C 0.29 7.43 15.32 88.33 1.35 8.78 16 17 N -0.46 -13.58 18.54 19.00 0.35 -13.22 16 18 C -0.14 -3.30 9.59 22.65 0.22 -3.08 16 19 C 0.23 6.37 6.77 38.19 0.26 6.63 16 20 N -0.86 -20.15 9.09 -51.06 -0.46 -20.62 16 21 H 0.02 0.65 7.34 -2.38 -0.02 0.63 16 22 H 0.07 2.43 6.76 -2.39 -0.02 2.41 16 23 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 24 H -0.03 -1.51 7.44 -2.39 -0.02 -1.53 16 25 H 0.00 -0.07 8.06 -2.39 -0.02 -0.09 16 26 H 0.26 14.56 8.31 -92.71 -0.77 13.78 16 27 H 0.12 3.91 7.10 -2.91 -0.02 3.89 16 28 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 29 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 30 H 0.41 10.89 8.10 -92.71 -0.75 10.14 16 31 H 0.41 6.73 8.84 -92.70 -0.82 5.91 16 Total: -1.00 -61.42 276.86 3.52 -57.89 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -0.40 Total: 13.56 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: 4.52 Total: -5.47 kcal Atomic # 7 Polarization: -107.65 SS G_CDS: -2.62 Total: -110.28 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Total: -61.42 3.52 -57.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035674255.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.270 kcal (2) G-P(sol) polarization free energy of solvation -61.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds